RLG00000027047
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
7918076 .. 7919555
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027047

Sequence Viewer

Length: 1224 bp
ATGTTCACAGGTGTCATTCCTACCTCAGTTGGGAAATTACAAAGCCTGCGACAATTAGGTTTACATGAAAACAGATTGTCAGGCCATATCCCATCTTCCATAGGAAACCTCACTCAATTATATGAACTCTTCTTATCAGCAAATGAATTAGAAGGAAGCATTCCTCCAAGTATTGGAAACTGCCAGAGTTTGCACGAGATTGAGATAACACATAATAGGCTTAGTGGAGAAATATCACCACAGGTTTTTAGTATTTTCTCACTTTTCTATCGCAACTTATCTCTAAACTCACTAAACGGCAGCCTAGCTGGGGAAGTGGGTAAGCTGAAGAATATCTTTGCACTGGACATCAGTGAAAACAATTTGACTGGACAAATTCCAGACAATAGTGGTGACTGTGTGGACCTTGAATATCTTGACCTACAAGCCAATCTCTTTGAAGGCAAGATACCTTCATCTTTGACTTCGAGAGGTCTTCGGCAGTTAGATTTATCACATAACAATTTGTCAGGAGAAATTCCAAAAGACATACAGAGACTTCCATACCTGCTATATTTGAATATTTCTTTCAATAATCTGGAGGGTGAGGCACTTCTTCAAGCTACCAGTGGATTCTCCCCAAGCACGCTGATTGGATCAGGTGGTTTTGGTTCTGTATACAAAGGAATTCTTGATCAGGAAGAAAATAATGTAGTTGCCGTAAAGGTCCTCAACCTTCAACAAAAAGGAGTGTCCAAGAGTTTCACATCAGAATGCAATGCACTGAGAAATATCCGGCACAGAAATCTTGTGAAGATTCTAACGTGTTGCTCCAGCATGGATCACAATGCTAATGAATTCAAAGCTCTCGTTTTTGAATATATGTCAAACAGAAGCTTAGAGGAGTGGCTGCACAGGGAAGACCAATCAAGGAGCTTGAACCTTCTTCAAAGATTGAACATTGTTGTTGACGTGACTTCTGCATTATGTTATCTTCATGACCATTGTGAACCACAAATTATTCACTGTGACATGAAGCCAAATAACGTTTTTCTTGATGATGACATGGTTGCTCGTGTTGGTGATTTTGGATTAGCAAGACTCATCATGGACTCCTCTCAAAATCAAACTAGCACAGTTGGAATAAAGGGAACCATTGGTTATGCTGCTCCAGGTAACAATCTTCTACATACCGCTTTAGAAATTGCTATGTTTTTTAACATGAATATGAAGATACATAGATAA

Protein Analysis

408

Amino Acids

45.07

Weight (kDa)

5.62

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 6 - 198 7.8e-11 Leucine-rich repeat region
Pkinase PF00069 209 - 384 4.2e-32 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 210 - 384 5.6e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 555
AccB7I CCANNNNNTGG 1 cut(s) 173
AccI GTMKAC 1 cut(s) 657
AciI CCGC 1 cut(s) 1173
AclI AACGTT 1 cut(s) 1026
AclWI GGATC 2 cut(s) 643, 828
AcsI RAATTY 4 cut(s) 375, 516, 666, 836
AcuI CTGAAG 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 30, 173, 310
AflIII ACRYGT 1 cut(s) 803
AjiI CACGTC 1 cut(s) 952
AjnI CCWGG 1 cut(s) 1150
AluBI AGCT 6 cut(s) 308, 325, 602, 845, 876, 915
AluI AGCT 6 cut(s) 308, 325, 602, 845, 876, 915
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 2 cut(s) 643, 828
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 3 cut(s) 300, 889, 1145
ApoI RAATTY 4 cut(s) 375, 516, 666, 836
AspS9I GGNCC 2 cut(s) 403, 706
AsuHPI GGTGA 4 cut(s) 228, 404, 596, 1073
AvaII GGWCC 2 cut(s) 403, 706
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BauI CACGAG 2 cut(s) 194, 1053
BbsI GAAGAC 2 cut(s) 467, 906
BbvI GCAGC 3 cut(s) 312, 876, 1132
BccI CCATC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 313, 683
BciT130I CCWGG 1 cut(s) 1152
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 2 cut(s) 305, 1110
BfuAI ACCTGC 1 cut(s) 555
BisI GCNGC 3 cut(s) 301, 890, 1146
BlsI GCNGC 3 cut(s) 302, 891, 1147
Bme1390I CCNGG 1 cut(s) 1152
Bme18I GGWCC 2 cut(s) 403, 706
BmgBI CACGTC 1 cut(s) 952
BmgT120I GGNCC 2 cut(s) 403, 706
BmiI GGNNCC 1 cut(s) 1132
BmrFI CCNGG 1 cut(s) 1152
BpiI GAAGAC 2 cut(s) 467, 906
BpmI CTGGAG 3 cut(s) 599, 796, 1134
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 173, 310
Bse1I ACTGG 3 cut(s) 348, 373, 606
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 1152
BseLI CCNNNNNNNGG 3 cut(s) 30, 173, 310
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 2 cut(s) 39, 755
BseNI ACTGG 3 cut(s) 348, 373, 606
BseRI GAGGAG 2 cut(s) 896, 1084
BseXI GCAGC 3 cut(s) 312, 876, 1132
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 775
BslI CCNNNNNNNGG 3 cut(s) 30, 173, 310
BsmAI GTCTC 1 cut(s) 529
BsmI GAATGC 2 cut(s) 159, 758
BsnI GGCC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 635, 673, 820
BspACI CCGC 1 cut(s) 1173
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 2 cut(s) 38, 756
BspHI TCATGA 1 cut(s) 976
BspLI GGNNCC 1 cut(s) 1132
BspMI ACCTGC 1 cut(s) 555
BspPI GGATC 2 cut(s) 643, 828
BsrDI GCAATG 1 cut(s) 763
BsrI ACTGG 3 cut(s) 348, 373, 606
BssMI GATC 3 cut(s) 635, 673, 820
BssNAI GTATAC 1 cut(s) 658
BssSI CACGAG 2 cut(s) 194, 1053
Bst1107I GTATAC 1 cut(s) 658
Bst2BI CACGAG 2 cut(s) 194, 1053
Bst2UI CCWGG 1 cut(s) 1152
Bst4CI ACNGT 3 cut(s) 398, 1007, 1117
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 47, 626
BstDEI CTNAG 4 cut(s) 25, 221, 764, 877
BstKTI GATC 3 cut(s) 638, 676, 823
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 3 cut(s) 635, 673, 820
BstNI CCWGG 1 cut(s) 1152
BstSCI CCNGG 1 cut(s) 1150
BstV1I GCAGC 3 cut(s) 312, 876, 1132
BstV2I GAAGAC 2 cut(s) 467, 906
BstZ17I GTATAC 1 cut(s) 658
BsuRI GGCC 1 cut(s) 84
BtrI CACGTC 1 cut(s) 952
BtsIMutI CAGTG 5 cut(s) 341, 358, 613, 761, 1003
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 2 cut(s) 47, 626
CciI TCATGA 1 cut(s) 976
Cfr13I GGNCC 2 cut(s) 403, 706
CviAII CATG 7 cut(s) 65, 817, 977, 1012, 1045, 1087, 1201
DdeI CTNAG 4 cut(s) 25, 221, 764, 877
DpnI GATC 3 cut(s) 637, 675, 822
DpnII GATC 3 cut(s) 635, 673, 820
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 403, 706
Eco57I CTGAAG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 706
EcoRI GAATTC 2 cut(s) 666, 836
EcoRII CCWGG 1 cut(s) 1150
FaeI CATG 7 cut(s) 68, 820, 980, 1015, 1048, 1090, 1204
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 654, 686
FatI CATG 7 cut(s) 64, 816, 976, 1011, 1044, 1086, 1200
FbaI TGATCA 1 cut(s) 673
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 3 cut(s) 301, 890, 1146
Fsp4HI GCNGC 3 cut(s) 301, 890, 1146
FspBI CTAG 2 cut(s) 305, 1110
GluI GCNGC 3 cut(s) 301, 890, 1146
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 3 cut(s) 599, 796, 1134
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 775
Hin1II CATG 7 cut(s) 68, 820, 980, 1015, 1048, 1090, 1204
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HindIII AAGCTT 1 cut(s) 874
HinfI GANTC 4 cut(s) 612, 796, 1080, 1091
HpaII CCGG 1 cut(s) 775
HphI GGTGA 4 cut(s) 228, 404, 596, 1073
Hpy166II GTNNAC 6 cut(s) 6, 62, 403, 658, 949, 989
Hpy188I TCNGA 1 cut(s) 751
Hpy188III TCNNGA 9 cut(s) 380, 416, 468, 510, 578, 671, 677, 977, 1034
Hpy8I GTNNAC 6 cut(s) 6, 62, 403, 658, 949, 989
HpyAV CCTTC 5 cut(s) 146, 434, 462, 725, 932
HpyCH4III ACNGT 3 cut(s) 398, 1007, 1117
HpyCH4IV ACGT 3 cut(s) 803, 951, 1026
HpyCH4V TGCA 6 cut(s) 193, 341, 756, 761, 892, 962
HpyF3I CTNAG 4 cut(s) 25, 221, 764, 877
HpySE526I ACGT 3 cut(s) 803, 951, 1026
Hsp92II CATG 7 cut(s) 68, 820, 980, 1015, 1048, 1090, 1204
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 3 cut(s) 635, 673, 820
LmnI GCTCC 3 cut(s) 815, 912, 1153
Lsp1109I GCAGC 3 cut(s) 312, 876, 1132
MaeI CTAG 2 cut(s) 305, 1110
MaeII ACGT 3 cut(s) 803, 951, 1026
MaeIII GTNAC 4 cut(s) 392, 952, 1007, 1154
MalI GATC 3 cut(s) 637, 675, 822
MboI GATC 3 cut(s) 635, 673, 820
MlyI GAGTC 2 cut(s) 1074, 1085
MmeI TCCRAC 1 cut(s) 1099
MnlI CCTC 9 cut(s) 34, 119, 174, 464, 574, 580, 719, 874, 1105
MseI TTAA 1 cut(s) 1197
MslI CAYNNNNRTG 2 cut(s) 751, 1205
MspI CCGG 1 cut(s) 775
MspR9I CCNGG 1 cut(s) 1152
Mva1269I GAATGC 2 cut(s) 159, 758
MvaI CCWGG 1 cut(s) 1152
NdeII GATC 3 cut(s) 635, 673, 820
NlaIII CATG 7 cut(s) 68, 820, 980, 1015, 1048, 1090, 1204
NlaIV GGNNCC 1 cut(s) 1132
NmuCI GTSAC 3 cut(s) 392, 952, 1007
PagI TCATGA 1 cut(s) 976
PctI GAATGC 2 cut(s) 159, 758
PfeI GAWTC 2 cut(s) 612, 796
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 3 cut(s) 302, 891, 1147
PleI GAGTC 2 cut(s) 1074, 1085
PpsI GAGTC 2 cut(s) 1074, 1085
PpuMI RGGWCCY 1 cut(s) 706
Psp1406I AACGTT 1 cut(s) 1026
Psp5II RGGWCCY 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 1150
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 1 cut(s) 1150
PspN4I GGNNCC 1 cut(s) 1132
PspPI GGNCC 2 cut(s) 403, 706
PspPPI RGGWCCY 1 cut(s) 706
RseI CAYNNNNRTG 2 cut(s) 751, 1205
SaqAI TTAA 1 cut(s) 1197
SatI GCNGC 3 cut(s) 301, 890, 1146
Sau3AI GATC 3 cut(s) 635, 673, 820
Sau96I GGNCC 2 cut(s) 403, 706
SchI GAGTC 2 cut(s) 1074, 1085
ScrFI CCNGG 1 cut(s) 1152
SinI GGWCC 2 cut(s) 403, 706
SmiMI CAYNNNNRTG 2 cut(s) 751, 1205
SsiI CCGC 1 cut(s) 1173
SspI AATATT 1 cut(s) 562
SspMI CTAG 2 cut(s) 305, 1110
StyD4I CCNGG 1 cut(s) 1150
TaaI ACNGT 3 cut(s) 398, 1007, 1117
TaiI ACGT 3 cut(s) 806, 954, 1029
TaqI TCGA 1 cut(s) 467
TfiI GAWTC 2 cut(s) 612, 796
Tru1I TTAA 1 cut(s) 1197
Tru9I TTAA 1 cut(s) 1197
TscAI CASTG 5 cut(s) 348, 358, 613, 768, 1010
TseFI GTSAC 3 cut(s) 392, 952, 1007
TseI GCWGC 3 cut(s) 300, 889, 1145
Tsp45I GTSAC 3 cut(s) 392, 952, 1007
TspDTI ATGAA 9 cut(s) 81, 138, 159, 444, 849, 965, 1028, 1217, 1223
TspRI CASTG 5 cut(s) 348, 358, 613, 768, 1010
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 403, 706
XapI RAATTY 4 cut(s) 375, 516, 666, 836
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 2 cut(s) 305, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.