Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028980.1

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

846 .. 2113

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028980.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgtcaaatagaagtttagaggaatggcttcacagagagaaccaatcagggagtctgaaccttcttcaaagactgaatattgctgttgatgtggcttctgcattgtgttatcttcattaccattgtgaaccacaagttattcaccgtgatatgaagccaagcaacgttcttcttgacgatgacatggttgcttgtgttggtgattttgggttagcaagactcatcccaccgaccacggactcctctaacaatcaaagtagcacagctgggataaagggaaccattggttatgctgctccagagtatgcagttggtgttgagccatcaatagaaggggatgtatacagttatggaatccttgtgctgcaattgctcacaggaagaagacccactgatgaaatgtttgtagacggttgcaatatccatacttttgttaagacgtccatacaaggaagacttatgcaaattgtagatcctactcttattgccactctagaagagactgcaacttcgacaacacacaatgaagtgaccagcatccgtggttacaataatgaaatccaagctgatgaagataacattgacaatgagaatttaagcacgatgaacacttacgtgtggaagagcatacttccaacccttaagattggacttgcatgctcggaggaatcaccgaagaataggatgactatggaggaggtccacaaggagctgcaccatataaaaaatgcttatgctaatgacatccgtcgagagaggccaagaagaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

257

Amino Acids

28.79

Weight (kDa)

5.18

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
AccI	GTMKAC	2 cut(s)	342, 408
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	592
AcyI	GRCGYC	1 cut(s)	440
AflII	CTTAAG	1 cut(s)	641
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	1 cut(s)	68
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	4 cut(s)	266, 566, 712, 771
AluI	AGCT	4 cut(s)	266, 566, 712, 771
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	1 cut(s)	758
ApeKI	GCWGC	3 cut(s)	293, 364, 712
ApoI	RAATTY	1 cut(s)	592
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
Asp700I	GAANNNNTTC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	700
AsuHPI	GGTGA	3 cut(s)	134, 212, 663
AvaII	GGWCC	1 cut(s)	700
BbsI	GAAGAC	2 cut(s)	391, 460
BbvI	GCAGC	3 cut(s)	280, 351, 699
BccI	CCATC	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	1 cut(s)	494
BfrI	CTTAAG	1 cut(s)	641
BisI	GCNGC	3 cut(s)	294, 365, 713
BlsI	GCNGC	3 cut(s)	295, 366, 714
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	1 cut(s)	280
BmsI	GCATC	1 cut(s)	546
BoxI	GACNNNNGTC	1 cut(s)	747
BpiI	GAAGAC	2 cut(s)	391, 460
BpmI	CTGGAG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	616
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	234, 541
BseDI	CCNNGG	2 cut(s)	234, 541
BseGI	GGATG	5 cut(s)	222, 343, 537, 690, 744
BseRI	GAGGAG	2 cut(s)	232, 710
BseXI	GCAGC	3 cut(s)	280, 351, 699
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	698
BshFI	GGCC	1 cut(s)	760
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	760
Bsp143I	GATC	1 cut(s)	472
BspANI	GGCC	1 cut(s)	760
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	617
BspTI	CTTAAG	1 cut(s)	641
BssECI	CCNNGG	2 cut(s)	234, 541
BssMI	GATC	1 cut(s)	472
BssNAI	GTATAC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	440
Bst1107I	GTATAC	1 cut(s)	343
Bst4CI	ACNGT	3 cut(s)	146, 347, 413
Bst6I	CTCTTC	2 cut(s)	492, 617
BstACI	GRCGYC	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	641
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	658
BstDSI	CCRYGG	2 cut(s)	234, 541
BstF5I	GGATG	5 cut(s)	222, 343, 537, 690, 744
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	660
BstPAI	GACNNNNGTC	1 cut(s)	747
BstV1I	GCAGC	3 cut(s)	280, 351, 699
BstV2I	GAAGAC	2 cut(s)	391, 460
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BstZ17I	GTATAC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	760
BtgI	CCRYGG	2 cut(s)	234, 541
BtsCI	GGATG	5 cut(s)	222, 343, 537, 690, 744
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	658
Cfr13I	GGNCC	1 cut(s)	700
CviAII	CATG	2 cut(s)	184, 657
CviJI	RGCY	9 cut(s)	28, 95, 157, 266, 322, 566, 712, 760, 771
CviKI_1	RGCY	9 cut(s)	28, 95, 157, 266, 322, 566, 712, 760, 771
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	492, 617
EarI	CTCTTC	2 cut(s)	492, 617
Eco47I	GGWCC	1 cut(s)	700
FaeI	CATG	2 cut(s)	187, 660
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	2 cut(s)	183, 656
FblI	GTMKAC	2 cut(s)	342, 408
Fnu4HI	GCNGC	3 cut(s)	294, 365, 713
FokI	GGATG	5 cut(s)	209, 350, 524, 697, 731
Fsp4HI	GCNGC	3 cut(s)	294, 365, 713
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	3 cut(s)	294, 365, 713
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	760
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	2 cut(s)	187, 660
HinfI	GANTC	5 cut(s)	52, 219, 239, 354, 668
HphI	GGTGA	3 cut(s)	134, 212, 663
Hpy166II	GTNNAC	4 cut(s)	128, 343, 409, 703
Hpy188I	TCNGA	2 cut(s)	57, 664
Hpy188III	TCNNGA	4 cut(s)	173, 299, 494, 752
Hpy8I	GTNNAC	4 cut(s)	128, 343, 409, 703
Hpy99I	CGWCG	1 cut(s)	753
HpyAV	CCTTC	2 cut(s)	71, 326
HpyCH4III	ACNGT	3 cut(s)	146, 347, 413
HpyCH4IV	ACGT	3 cut(s)	165, 440, 615
HpyCH4V	TGCA	8 cut(s)	101, 308, 367, 417, 463, 506, 656, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpySE526I	ACGT	3 cut(s)	165, 440, 615
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	187, 660
Kzo9I	GATC	1 cut(s)	472
LguI	GCTCTTC	1 cut(s)	617
LmnI	GCTCC	2 cut(s)	301, 709
LpnPI	CCDG	5 cut(s)	33, 252, 312, 363, 547
Lsp1109I	GCAGC	3 cut(s)	280, 351, 699
LweI	GCATC	1 cut(s)	546
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	3 cut(s)	165, 440, 615
MaeIII	GTNAC	2 cut(s)	529, 545
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	3 cut(s)	368, 465, 592
MlyI	GAGTC	3 cut(s)	61, 213, 233
MmeI	TCCRAC	1 cut(s)	659
MnlI	CCTC	6 cut(s)	13, 253, 658, 688, 691, 750
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	3 cut(s)	435, 596, 642
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	187, 660
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	1 cut(s)	660
OliI	CACNNNNGTG	1 cut(s)	614
PaeI	GCATGC	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	617
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	354, 668
PkrI	GCNGC	3 cut(s)	295, 366, 714
PleI	GAGTC	3 cut(s)	60, 213, 233
PpsI	GAGTC	3 cut(s)	60, 213, 233
Ppu21I	YACGTR	1 cut(s)	616
PshAI	GACNNNNGTC	1 cut(s)	747
Psp1406I	AACGTT	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	614
SapI	GCTCTTC	1 cut(s)	617
SaqAI	TTAA	3 cut(s)	435, 596, 642
SatI	GCNGC	3 cut(s)	294, 365, 713
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	700
SchI	GAGTC	3 cut(s)	61, 213, 233
SetI	ASST	9 cut(s)	63, 168, 268, 443, 568, 618, 702, 714, 773
SfaNI	GCATC	1 cut(s)	546
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	3 cut(s)	368, 465, 592
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	494
TaaI	ACNGT	3 cut(s)	146, 347, 413
TaiI	ACGT	3 cut(s)	168, 443, 618
TaqI	TCGA	2 cut(s)	512, 751
TasI	AATT	3 cut(s)	368, 465, 592
TfiI	GAWTC	2 cut(s)	354, 668
Tru1I	TTAA	3 cut(s)	435, 596, 642
Tru9I	TTAA	3 cut(s)	435, 596, 642
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	3 cut(s)	293, 364, 712
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	7 cut(s)	104, 167, 411, 540, 570, 585, 620
TspGWI	ACGGA	3 cut(s)	251, 530, 737
TspRI	CASTG	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	592
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	660
XmiI	GTMKAC	2 cut(s)	342, 408
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	494
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.