Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016906.1

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

16640 .. 18403

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016906.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggaaataccaaactttgtggaggtgtttcagaattgcagctaccagcatgccccattaaagtaccaaagcaaagaaagtggcatgacgcttcatcatgctacttctggattctctccgagcaatcaaattggatcaggtggttttggctctgtatacaaagggattcttaaacaagaagaaaacaatgttgttgccatcaaggtcctcaagcttcaacagaaaggtgcttccaagagttttgtggttgaatgcaatgcactaagaaatatccagcacaggaaccttgtgaagatcttgacatgttgctctagcattgactacaatggtaatgacttcaaagctctagtctttgagtatatgtcaaatggaagtttagaggagtggctgcatagagaaaatcaatcaagaagtttgaaccttcttcaaagactgaatattgctgttgatttggcttctgcattgtattatcttcatgaccattgtgaaccacatatcattcattgtgatgtgaagccgagcaatgttcttcttgataatgacatggttgctcgttttggtgattttgggttggcaagactcatctcaacaaccacagactcctatcaaaatcaaagtagcacggttggaataaagggaaccattggctatgctgctccaggaagaagacctatcgatgatatgtttaaagatggtttgaacctccataattttgtcaagatggccataccagaaacagtgatgcagattgtagatcctactcttcttgccactttagaagagacagcacctgcaacatcacaaaatgtagtgaactacatcaactgttacaataatgaaatcgaagcagttgaagaaaacattgacaatgagaatttaagcaagatgaatactgtgtggaagtgcatacttccaacccttaagattggacttgcatgctcggaagaatcaccaaggaatagaatgtctatggaggaggtccataggaagctacaccatataaaaaatgcttacactggtgttgatcgacatctgtcaagaaaggccaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

350

Amino Acids

39.32

Weight (kDa)

6.53

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	799
Acc36I	ACCTGC	1 cut(s)	799
AccI	GTMKAC	1 cut(s)	156
AclWI	GGATC	2 cut(s)	142, 749
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	1 cut(s)	874
AfaI	GTAC	1 cut(s)	65
AflII	CTTAAG	1 cut(s)	920
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	7 cut(s)	218, 251, 340, 418, 428, 700, 854
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	4 cut(s)	42, 214, 344, 991
AluI	AGCT	4 cut(s)	42, 214, 344, 991
Alw26I	GTCTC	1 cut(s)	776
AlwI	GGATC	2 cut(s)	142, 749
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	2 cut(s)	723, 1044
ApeKI	GCWGC	3 cut(s)	39, 388, 653
ApoI	RAATTY	1 cut(s)	874
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspS9I	GGNCC	2 cut(s)	205, 979
AsuHPI	GGTGA	2 cut(s)	572, 942
AvaII	GGWCC	2 cut(s)	205, 979
BalI	TGGCCA	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	673
BbvI	GCAGC	3 cut(s)	51, 375, 640
BccI	CCATC	3 cut(s)	206, 686, 715
BciT130I	CCWGG	1 cut(s)	660
BcoDI	GTCTC	1 cut(s)	776
BfaI	CTAG	2 cut(s)	312, 347
BfrI	CTTAAG	1 cut(s)	920
BfuAI	ACCTGC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	3 cut(s)	40, 389, 654
BlsI	GCNGC	3 cut(s)	41, 390, 655
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	2 cut(s)	205, 979
BmgT120I	GGNCC	2 cut(s)	205, 979
BmiI	GGNNCC	2 cut(s)	284, 640
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	1 cut(s)	732
BoxI	GACNNNNGTC	1 cut(s)	1033
BpiI	GAAGAC	1 cut(s)	673
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	675
BsaBI	GATNNNNATC	1 cut(s)	1029
BsaJI	CCNNGG	1 cut(s)	953
Bse1I	ACTGG	1 cut(s)	1021
Bse3DI	GCAATG	2 cut(s)	262, 529
Bse8I	GATNNNNATC	1 cut(s)	1029
BseBI	CCWGG	1 cut(s)	660
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	953
BseJI	GATNNNNATC	1 cut(s)	1029
BseMI	GCAATG	2 cut(s)	262, 529
BseNI	ACTGG	1 cut(s)	1021
BseRI	GAGGAG	2 cut(s)	395, 989
BseXI	GCAGC	3 cut(s)	51, 375, 640
BshFI	GGCC	2 cut(s)	725, 1046
BshVI	ATCGAT	1 cut(s)	675
BsmAI	GTCTC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	725, 1046
Bsp143I	GATC	4 cut(s)	134, 294, 754, 1024
BspANI	GGCC	2 cut(s)	725, 1046
BspDI	ATCGAT	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	284, 640
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	2 cut(s)	142, 749
BspTI	CTTAAG	1 cut(s)	920
BsrDI	GCAATG	2 cut(s)	262, 529
BsrI	ACTGG	1 cut(s)	1021
BssECI	CCNNGG	1 cut(s)	953
BssMI	GATC	4 cut(s)	134, 294, 754, 1024
BssNAI	GTATAC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	953
Bst1107I	GTATAC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	4 cut(s)	625, 739, 827, 895
Bst6I	CTCTTC	2 cut(s)	768, 774
BstAFI	CTTAAG	1 cut(s)	920
BstC8I	GCNNGC	2 cut(s)	51, 937
BstDEI	CTNAG	1 cut(s)	263
BstKTI	GATC	4 cut(s)	137, 297, 757, 1027
BstMAI	GTCTC	1 cut(s)	776
BstMBI	GATC	4 cut(s)	134, 294, 754, 1024
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	3 cut(s)	53, 306, 939
BstPAI	GACNNNNGTC	1 cut(s)	1033
BstSCI	CCNGG	1 cut(s)	658
BstV1I	GCAGC	3 cut(s)	51, 375, 640
BstV2I	GAAGAC	1 cut(s)	673
BstX2I	RGATCY	2 cut(s)	294, 754
BstYI	RGATCY	2 cut(s)	294, 754
BstZ17I	GTATAC	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	725, 1046
BsuTUI	ATCGAT	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	744, 1014
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	51, 937
CaiI	CAGNNNCTG	1 cut(s)	791
CciI	TCATGA	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	205, 979
ClaI	ATCGAT	1 cut(s)	675
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	64
CspCI	CAANNNNNGTGG	3 cut(s)	35, 61, 96
CviAII	CATG	7 cut(s)	50, 85, 98, 303, 476, 544, 936
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	4 cut(s)	136, 296, 756, 1026
DpnII	GATC	4 cut(s)	134, 294, 754, 1024
DraI	TTTAAA	1 cut(s)	688
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	2 cut(s)	768, 774
EarI	CTCTTC	2 cut(s)	768, 774
Eco130I	CCWWGG	1 cut(s)	953
Eco47I	GGWCC	2 cut(s)	205, 979
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	953
ErhI	CCWWGG	1 cut(s)	953
FaeI	CATG	7 cut(s)	53, 88, 101, 306, 479, 547, 939
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	7 cut(s)	49, 84, 97, 302, 475, 543, 935
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	40, 389, 654
Fsp4HI	GCNGC	3 cut(s)	40, 389, 654
FspBI	CTAG	2 cut(s)	312, 347
GluI	GCNGC	3 cut(s)	40, 389, 654
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	2 cut(s)	725, 1046
HgaI	GACGC	1 cut(s)	97
Hin1II	CATG	7 cut(s)	53, 88, 101, 306, 479, 547, 939
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	5 cut(s)	111, 166, 579, 599, 947
HphI	GGTGA	2 cut(s)	572, 942
Hpy166II	GTNNAC	3 cut(s)	157, 488, 814
Hpy188I	TCNGA	3 cut(s)	33, 120, 943
Hpy188III	TCNNGA	7 cut(s)	108, 298, 408, 476, 533, 718, 1038
Hpy8I	GTNNAC	3 cut(s)	157, 488, 814
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	4 cut(s)	625, 739, 827, 895
HpyCH4V	TGCA	9 cut(s)	39, 255, 260, 391, 461, 745, 794, 906, 935
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	7 cut(s)	53, 88, 101, 306, 479, 547, 939
Kzo9I	GATC	4 cut(s)	134, 294, 754, 1024
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	3 cut(s)	51, 375, 640
LweI	GCATC	1 cut(s)	732
MaeI	CTAG	2 cut(s)	312, 347
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	4 cut(s)	136, 296, 756, 1026
MboI	GATC	4 cut(s)	134, 294, 754, 1024
MflI	RGATCY	2 cut(s)	294, 754
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	4 cut(s)	34, 129, 709, 874
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	2 cut(s)	573, 593
MmeI	TCCRAC	2 cut(s)	607, 938
MnlI	CCTC	6 cut(s)	16, 218, 373, 713, 967, 970
Mox20I	TGGCCA	1 cut(s)	725
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	5 cut(s)	59, 171, 687, 878, 921
MslI	CAYNNNNRTG	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	725
MspCI	CTTAAG	1 cut(s)	920
MspR9I	CCNGG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	660
NdeII	GATC	4 cut(s)	134, 294, 754, 1024
NlaIII	CATG	7 cut(s)	53, 88, 101, 306, 479, 547, 939
NlaIV	GGNNCC	2 cut(s)	284, 640
NmeAIII	GCCGAG	1 cut(s)	543
NspI	RCATGY	3 cut(s)	53, 306, 939
PaeI	GCATGC	2 cut(s)	53, 939
PagI	TCATGA	1 cut(s)	475
PaqCI	CACCTGC	1 cut(s)	799
PciI	ACATGT	1 cut(s)	302
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	111, 166, 947
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	3 cut(s)	41, 390, 655
PleI	GAGTC	2 cut(s)	573, 593
PpsI	GAGTC	2 cut(s)	573, 593
PpuMI	RGGWCCY	1 cut(s)	205
PscI	ACATGT	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	1033
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	2 cut(s)	284, 640
PspPI	GGNCC	2 cut(s)	205, 979
PspPPI	RGGWCCY	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	294, 754
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	5 cut(s)	59, 171, 687, 878, 921
SatI	GCNGC	3 cut(s)	40, 389, 654
Sau3AI	GATC	4 cut(s)	134, 294, 754, 1024
Sau96I	GGNCC	2 cut(s)	205, 979
SchI	GAGTC	2 cut(s)	573, 593
ScrFI	CCNGG	1 cut(s)	660
SfaNI	GCATC	1 cut(s)	732
SinI	GGWCC	2 cut(s)	205, 979
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	209, 920
SmoI	CTYRAG	2 cut(s)	209, 920
SphI	GCATGC	2 cut(s)	53, 939
Sse9I	AATT	4 cut(s)	34, 129, 709, 874
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	312, 347
StyD4I	CCNGG	1 cut(s)	658
StyI	CCWWGG	1 cut(s)	953
TaaI	ACNGT	4 cut(s)	625, 739, 827, 895
TaqI	TCGA	3 cut(s)	675, 843, 1027
TasI	AATT	4 cut(s)	34, 129, 709, 874
TfiI	GAWTC	3 cut(s)	111, 166, 947
Tru1I	TTAA	5 cut(s)	59, 171, 687, 878, 921
Tru9I	TTAA	5 cut(s)	59, 171, 687, 878, 921
TscAI	CASTG	2 cut(s)	744, 1021
TseI	GCWGC	3 cut(s)	39, 388, 653
TspDTI	ATGAA	5 cut(s)	83, 464, 491, 852, 902
TspRI	CASTG	2 cut(s)	744, 1021
Vha464I	CTTAAG	1 cut(s)	920
VpaK11BI	GGWCC	2 cut(s)	205, 979
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	3 cut(s)	53, 306, 939
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	2 cut(s)	312, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.