Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Forward (+)

7878526 .. 7881187

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCAGATTGTGGATCCTACTCTTCTTGCCAGTTTAGAAGTGACAACAAATGCAACAACACACAATGAAGTGAACTACATCAGTGGTTACAACAATGAAATCGAAGCAGATGAAGAAAACAATGACAATGAGAATTTAAGCGATGAACACTTCCGTGTGGAAGAAATGATAATCCTGCAGAACAAAATACAATCGTCATCGTTGCTCGTGTTGGTGATTTTGAGGTTAGCAAGACTCATCTCAACGACCACGGACTCCTCTCAAAATCAAAGTAGCACGGTTGGAATAAAGGGAATCATTGGCTATGCTGCTCCAGAATATGCGAGTGGTGTTGAGCCATCAAGACAAGGGGATGTATATAGTTATGGGGTGCTTGTGTTGCAAATGTTCACAGGAAGGAGACCTATCGATGAAATGTTTAAAGAGAGTTTGAACCTCCATAACTTTGTCAAGATGGCCATACCAGGAAGAGTGATTCAGATTGTAGATCTTAGTCTTCCGGCCACTTTAGAAGAGACAAGACCTGCAACATCTCAAAATATAGTGAACTACATTAGTAGTTACAATAATGAAATCGAAGCCATTGAAGAAAACATTGACAATGAGAATTTAAGCAAGATGAACACCTTATGTGTGGAAGTGCATACTTCCAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

4.42

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	91 - 151	9.4e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AclWI	GGATC	2 cut(s)	8, 21
AcoI	YGGCCR	2 cut(s)	456, 501
AcsI	RAATTY	2 cut(s)	133, 607
AgsI	TTSAA	2 cut(s)	433, 587
AjnI	CCWGG	1 cut(s)	463
AleI	CACNNNNGTG	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	394, 509
AlwI	GGATC	2 cut(s)	8, 21
AoxI	GGCC	2 cut(s)	456, 501
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	2 cut(s)	133, 607
AsuHPI	GGTGA	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	346, 448
BciT130I	CCWGG	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	394, 509
BfmI	CTRYAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	358
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	458, 503
BshVI	ATCGAT	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	394, 509
BsnI	GGCC	2 cut(s)	458, 503
Bso31I	GGTCTC	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	13, 487
BspANI	GGCC	2 cut(s)	458, 503
BspDI	ATCGAT	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	8, 21
BspTNI	GGTCTC	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	13, 487
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	3 cut(s)	27, 463, 507
BstDEI	CTNAG	1 cut(s)	491
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	16, 490
BstMAI	GTCTC	2 cut(s)	394, 509
BstMBI	GATC	2 cut(s)	13, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	13, 487
BstYI	RGATCY	2 cut(s)	13, 487
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	458, 503
BsuTUI	ATCGAT	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	532
ClaI	ATCGAT	1 cut(s)	408
CviJI	RGCY	5 cut(s)	303, 337, 458, 503, 581
CviKI_1	RGCY	5 cut(s)	303, 337, 458, 503, 581
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	2 cut(s)	15, 489
DpnII	GATC	2 cut(s)	13, 487
DraI	TTTAAA	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	456, 501
Eam1104I	CTCTTC	3 cut(s)	27, 463, 507
EarI	CTCTTC	3 cut(s)	27, 463, 507
Eco31I	GGTCTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	458, 503
HapII	CCGG	1 cut(s)	500
HinfI	GANTC	4 cut(s)	234, 254, 294, 475
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	3 cut(s)	73, 390, 547
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	3 cut(s)	314, 342, 451
Hpy8I	GTNNAC	3 cut(s)	73, 390, 547
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	6 cut(s)	4, 53, 178, 382, 527, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	491
Kzo9I	GATC	2 cut(s)	13, 487
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	43, 188, 327, 378, 450, 477, 513, 537
Lsp1109I	GCAGC	1 cut(s)	295
MaeIII	GTNAC	3 cut(s)	40, 86, 560
MalI	GATC	2 cut(s)	15, 489
MboI	GATC	2 cut(s)	13, 487
MboII	GAAGA	7 cut(s)	14, 125, 173, 480, 488, 524, 599
MflI	RGATCY	2 cut(s)	13, 487
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	2 cut(s)	133, 607
MluNI	TGGCCA	1 cut(s)	458
MlyI	GAGTC	2 cut(s)	228, 248
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	3 cut(s)	216, 268, 446
Mox20I	TGGCCA	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	4 cut(s)	137, 420, 611, 658
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	458
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	379
NdeII	GATC	2 cut(s)	13, 487
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	40
OliI	CACNNNNGTG	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	294, 475
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	228, 248
PpsI	GAGTC	2 cut(s)	228, 248
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	13, 487
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	4 cut(s)	137, 420, 611, 658
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	13, 487
SchI	GAGTC	2 cut(s)	228, 248
ScrFI	CCNGG	1 cut(s)	465
SetI	ASST	5 cut(s)	227, 406, 438, 526, 629
SfcI	CTRYAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	133, 607
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	102, 408, 576
TasI	AATT	2 cut(s)	133, 607
TfiI	GAWTC	2 cut(s)	294, 475
Tru1I	TTAA	4 cut(s)	137, 420, 611, 658
Tru9I	TTAA	4 cut(s)	137, 420, 611, 658
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	7 cut(s)	81, 111, 126, 159, 426, 585, 635
TspGWI	ACGGA	2 cut(s)	143, 266
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	2 cut(s)	133, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.