Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Reverse (-)

8030135 .. 8062666

Gene Structure 32532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCAAATGGAAGTTTAGAGGAGTGGCTGCACAGAGAAAACCAATCAAAGAGTTTGAACTTTCTTCAAAGACTAAATATTGATGTCGATGTGGTTTCTGCATTGTGTTATCTTCATGACCATTGTAAACCACAAATTATTCACCGTGACATGAAGCCAAGCAACGTTCTTCTTGACGATGACATGGTTGCTTGTGTTGGTGATTTTGGGTTAGCAAGACTCATCACACCGACCACAGACTCCTTTGACAATCAAAGTAGCACGGTTGGGATAAAGGGAACCATTGGTTATGCTGCTCCAGAGTATGCAATTGGTGTTGAGCCATCAATACAAGGGAATGTATATAGCTACGGAATCCTTTTGCTGCAATTGTTCACAGGAAGAAGACCCACTGATGAAATGTTTGTAGACGGTTGCGATATCCATACTTTTGTTGAGACGTCCATACAAGGAAGACTTATGGAAATTGTGGATCCTACTCTTATTGCCACTCTAGAAGAGACTGCAACTTCAACAACAAACAATGAAGTGACCAATATCCGTGGTTACAACAATGAAATCGAAGCTGATGAAGGCAACATTGAAAATGAGAATTTAAGCACGATGAACACTTATGTGTGGAAGTGTATACTTCCAACCCTTAAGATTGGACTTGCATGCTCGGAAGAATCACCCAAGAATAGGATGTCGATGGAGGAGGTCCACAGGGAGCTACACCATATAAAAAATGCTTACACTAGTGTTGACATCCGTCGAGAGAGGCCAAGAAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

258

Amino Acids

29.05

Weight (kDa)

4.91

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 151	4.1e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	1 - 133	1.8e-20	Protein kinase domain
APH	PF01636	34 - 80	3.6e-06	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
AccI	GTMKAC	2 cut(s)	408, 628
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	2 cut(s)	467, 480
AcsI	RAATTY	1 cut(s)	592
AcyI	GRCGYC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	681
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	4 cut(s)	58, 68, 513, 584
AhlI	ACTAGT	1 cut(s)	737
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	4 cut(s)	348, 566, 712, 774
AluI	AGCT	4 cut(s)	348, 566, 712, 774
Alw26I	GTCTC	2 cut(s)	431, 494
AlwI	GGATC	2 cut(s)	467, 480
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	3 cut(s)	28, 293, 364
ApoI	RAATTY	1 cut(s)	592
AspS9I	GGNCC	1 cut(s)	700
AsuHPI	GGTGA	3 cut(s)	134, 212, 663
AvaII	GGWCC	1 cut(s)	700
BamHI	GGATCC	1 cut(s)	472
BbsI	GAAGAC	2 cut(s)	391, 460
BbvI	GCAGC	3 cut(s)	15, 280, 351
BccI	CCATC	2 cut(s)	331, 685
BcoDI	GTCTC	2 cut(s)	431, 494
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	2 cut(s)	494, 738
BfrI	CTTAAG	1 cut(s)	641
BisI	GCNGC	3 cut(s)	29, 294, 365
BlsI	GCNGC	3 cut(s)	30, 295, 366
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	2 cut(s)	280, 474
BoxI	GACNNNNGTC	1 cut(s)	750
BpiI	GAAGAC	2 cut(s)	391, 460
BpmI	CTGGAG	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	690, 747
BseLI	CCNNNNNNNGG	1 cut(s)	681
BseRI	GAGGAG	2 cut(s)	35, 710
BseXI	GCAGC	3 cut(s)	15, 280, 351
BsgI	GTGCAG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	763
BslI	CCNNNNNNNGG	1 cut(s)	681
BsmAI	GTCTC	2 cut(s)	431, 494
BsmBI	CGTCTC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	763
Bsp143I	GATC	1 cut(s)	472
BspANI	GGCC	1 cut(s)	763
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	280, 474
BspPI	GGATC	2 cut(s)	467, 480
BspTI	CTTAAG	1 cut(s)	641
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	1 cut(s)	472
BssNAI	GTATAC	1 cut(s)	629
BssNI	GRCGYC	1 cut(s)	440
Bst1107I	GTATAC	1 cut(s)	629
Bst4CI	ACNGT	3 cut(s)	146, 265, 413
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	641
BstC8I	GCNNGC	1 cut(s)	658
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	2 cut(s)	690, 747
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	2 cut(s)	431, 494
BstMBI	GATC	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	660
BstPAI	GACNNNNGTC	1 cut(s)	750
BstV1I	GCAGC	3 cut(s)	15, 280, 351
BstV2I	GAAGAC	2 cut(s)	391, 460
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BstZ17I	GTATAC	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	763
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	2 cut(s)	690, 747
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	658
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	700
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	4 cut(s)	116, 151, 184, 657
CviJI	RGCY	8 cut(s)	28, 157, 322, 348, 566, 712, 763, 774
CviKI_1	RGCY	8 cut(s)	28, 157, 322, 348, 566, 712, 763, 774
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	700
EcoRV	GATATC	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	4 cut(s)	119, 154, 187, 660
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	4 cut(s)	115, 150, 183, 656
FblI	GTMKAC	2 cut(s)	408, 628
Fnu4HI	GCNGC	3 cut(s)	29, 294, 365
FokI	GGATG	2 cut(s)	697, 734
Fsp4HI	GCNGC	3 cut(s)	29, 294, 365
FspBI	CTAG	2 cut(s)	494, 738
GluI	GCNGC	3 cut(s)	29, 294, 365
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	763
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	4 cut(s)	119, 154, 187, 660
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HinfI	GANTC	4 cut(s)	219, 239, 354, 668
HphI	GGTGA	3 cut(s)	134, 212, 663
Hpy166II	GTNNAC	6 cut(s)	128, 375, 409, 629, 703, 745
Hpy188I	TCNGA	1 cut(s)	664
Hpy188III	TCNNGA	5 cut(s)	116, 173, 299, 494, 755
Hpy8I	GTNNAC	6 cut(s)	128, 375, 409, 629, 703, 745
Hpy99I	CGWCG	1 cut(s)	756
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	3 cut(s)	146, 265, 413
HpyCH4IV	ACGT	2 cut(s)	165, 440
HpyCH4V	TGCA	6 cut(s)	31, 101, 308, 367, 506, 656
HpySE526I	ACGT	2 cut(s)	165, 440
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	4 cut(s)	119, 154, 187, 660
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	2 cut(s)	301, 709
LpnPI	CCDG	3 cut(s)	312, 363, 691
Lsp1109I	GCAGC	3 cut(s)	15, 280, 351
MaeI	CTAG	2 cut(s)	494, 738
MaeII	ACGT	2 cut(s)	165, 440
MaeIII	GTNAC	3 cut(s)	146, 529, 545
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	8 cut(s)	56, 104, 161, 393, 396, 465, 509, 677
MfeI	CAATTG	2 cut(s)	309, 368
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	5 cut(s)	135, 309, 368, 465, 592
MlyI	GAGTC	2 cut(s)	213, 233
MmeI	TCCRAC	1 cut(s)	659
MnlI	CCTC	4 cut(s)	13, 688, 691, 753
MseI	TTAA	2 cut(s)	596, 642
MslI	CAYNNNNRTG	1 cut(s)	614
MspCI	CTTAAG	1 cut(s)	641
MunI	CAATTG	2 cut(s)	309, 368
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	4 cut(s)	119, 154, 187, 660
NlaIV	GGNNCC	2 cut(s)	280, 474
NmuCI	GTSAC	2 cut(s)	146, 529
NspI	RCATGY	1 cut(s)	660
OliI	CACNNNNGTG	1 cut(s)	614
PaeI	GCATGC	1 cut(s)	660
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	354, 668
PkrI	GCNGC	3 cut(s)	30, 295, 366
PleI	GAGTC	2 cut(s)	213, 233
PpsI	GAGTC	2 cut(s)	213, 233
PshAI	GACNNNNGTC	1 cut(s)	750
Psp1406I	AACGTT	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	280, 474
PspPI	GGNCC	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	2 cut(s)	596, 642
SatI	GCNGC	3 cut(s)	29, 294, 365
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	700
SchI	GAGTC	2 cut(s)	213, 233
SetI	ASST	7 cut(s)	168, 350, 443, 568, 702, 714, 776
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	737
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	5 cut(s)	135, 309, 368, 465, 592
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	494, 738
TaaI	ACNGT	3 cut(s)	146, 265, 413
TaiI	ACGT	2 cut(s)	168, 443
TaqI	TCGA	4 cut(s)	87, 561, 689, 754
TasI	AATT	5 cut(s)	135, 309, 368, 465, 592
TfiI	GAWTC	2 cut(s)	354, 668
Tru1I	TTAA	2 cut(s)	596, 642
Tru9I	TTAA	2 cut(s)	596, 642
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	146, 529
TseI	GCWGC	3 cut(s)	28, 293, 364
Tsp45I	GTSAC	2 cut(s)	146, 529
TspDTI	ATGAA	7 cut(s)	104, 167, 411, 540, 570, 585, 620
TspGWI	ACGGA	3 cut(s)	366, 530, 740
TspRI	CASTG	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	592
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	660
XmiI	GTMKAC	2 cut(s)	408, 628
XspI	CTAG	2 cut(s)	494, 738
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.