RLG00000027042
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
7875089 .. 7877269
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027042

Sequence Viewer

Length: 486 bp
ATGTTGTCGGGAAGAAGACCCACCGATGAAATGTTCAAAGACGGTTTGAATCTCCACAACTTCGTTAAGATGGCAATAACAAGAAGAATTGTGCAGATTGTGGACCCTGCTCTTCTCGCCACTGGAGAAGTGACAGCTCCTGCAGCAGCAAAAAACAAAGTAAACTACATGCTTAGAGGTCATAATGAAATTGAAGCAGAAGAGGGAAATAGAGATTATGAGAACCTAAGCAAGATGGACACACATGTGTGGAAGTGTATGCATTCAAGCCTTGAGATAGGAATGGCGTGCTCGGAGGAATCTCCAAAGAATAGTATGTGTATGGAGGATGTCGTCAGGGACCTCCACCATGTACAAAATGCTTTCAATGGTAATCAAAATGTTTCAGTTAACCAAGCAGAGATGCTGATAAACCTCATGAATATCCACGGGCTCATGAGCGTTGATGAATACCATGAGCACGTTTCAGATATTATTGTCCCTTAG

Protein Analysis

162

Amino Acids

18.18

Weight (kDa)

5.39

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 5 cut(s) 37, 49, 194, 267, 367
AleI CACNNNNGTG 2 cut(s) 245, 247
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw21I GWGCWC 2 cut(s) 293, 462
AlwNI CAGNNNCTG 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 143, 146
AspS9I GGNCC 2 cut(s) 103, 340
AvaII GGWCC 2 cut(s) 103, 340
BanII GRGCYC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 293, 462
BbvI GCAGC 2 cut(s) 155, 158
BccI CCATC 2 cut(s) 64, 229
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 144, 147
BlsI GCNGC 2 cut(s) 145, 148
Bme18I GGWCC 2 cut(s) 103, 340
BmgT120I GGNCC 2 cut(s) 103, 340
BmiI GGNNCC 2 cut(s) 105, 341
BmsI GCATC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 155, 158
BsgI GTGCAG 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 293, 462
BslFI GGGAC 2 cut(s) 353, 464
BsmFI GGGAC 2 cut(s) 353, 464
BsmI GAATGC 1 cut(s) 262
Bsp1286I GDGCHC 3 cut(s) 293, 435, 462
Bsp1407I TGTACA 1 cut(s) 352
BspHI TCATGA 2 cut(s) 417, 435
BspLI GGNNCC 2 cut(s) 105, 341
BspMAI CTGCAG 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 352
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 117, 195
BstAUI TGTACA 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 3 cut(s) 173, 227, 483
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 116, 143
BstNSI RCATGY 2 cut(s) 172, 248
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 155, 158
BstV2I GAAGAC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 289
CaiI CAGNNNCTG 1 cut(s) 140
CciI TCATGA 2 cut(s) 417, 435
Cfr13I GGNCC 2 cut(s) 103, 340
Csp6I GTAC 1 cut(s) 353
CviAII CATG 6 cut(s) 169, 245, 350, 418, 436, 455
CviJI RGCY 3 cut(s) 137, 270, 433
CviKI_1 RGCY 3 cut(s) 137, 270, 433
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 3 cut(s) 173, 227, 483
Eam1104I CTCTTC 2 cut(s) 117, 195
EarI CTCTTC 2 cut(s) 117, 195
Eco24I GRGCYC 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 103, 340
EcoO109I RGGNCCY 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 435
FaeI CATG 6 cut(s) 172, 248, 353, 421, 439, 458
FaqI GGGAC 2 cut(s) 353, 464
FatI CATG 6 cut(s) 168, 244, 349, 417, 435, 454
Fnu4HI GCNGC 2 cut(s) 144, 147
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 2 cut(s) 144, 147
GluI GCNGC 2 cut(s) 144, 147
GsuI CTGGAG 1 cut(s) 144
Hin1II CATG 6 cut(s) 172, 248, 353, 421, 439, 458
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 49, 299
HpaI GTTAAC 1 cut(s) 391
Hpy166II GTNNAC 3 cut(s) 103, 163, 391
Hpy188I TCNGA 2 cut(s) 295, 469
Hpy188III TCNNGA 3 cut(s) 9, 418, 436
Hpy8I GTNNAC 3 cut(s) 103, 163, 391
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 3 cut(s) 94, 143, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 143
HpyF3I CTNAG 3 cut(s) 173, 227, 483
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 6 cut(s) 172, 248, 353, 421, 439, 458
KspAI GTTAAC 1 cut(s) 391
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 4 cut(s) 108, 120, 153, 322
Lsp1109I GCAGC 2 cut(s) 155, 158
LweI GCATC 1 cut(s) 393
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 130
MboII GAAGA 5 cut(s) 24, 27, 96, 104, 212
MhlI GDGCHC 3 cut(s) 293, 435, 462
MluCI AATT 2 cut(s) 87, 189
MnlI CCTC 6 cut(s) 170, 196, 289, 319, 353, 425
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 2 cut(s) 66, 390
MslI CAYNNNNRTG 2 cut(s) 245, 247
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 116, 143
NlaIII CATG 6 cut(s) 172, 248, 353, 421, 439, 458
NlaIV GGNNCC 2 cut(s) 105, 341
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 172, 248
OliI CACNNNNGTG 2 cut(s) 245, 247
PagI TCATGA 2 cut(s) 417, 435
PciI ACATGT 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 117
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 49, 299
PkrI GCNGC 2 cut(s) 145, 148
PpuMI RGGWCCY 1 cut(s) 340
PscI ACATGT 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 105, 341
PspPI GGNCC 2 cut(s) 103, 340
PspPPI RGGWCCY 1 cut(s) 340
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 2 cut(s) 245, 247
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 66, 390
SatI GCNGC 2 cut(s) 144, 147
Sau96I GGNCC 2 cut(s) 103, 340
SduI GDGCHC 3 cut(s) 293, 435, 462
SetI ASST 6 cut(s) 139, 181, 228, 345, 417, 465
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 2 cut(s) 103, 340
SmiMI CAYNNNNRTG 2 cut(s) 245, 247
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 2 cut(s) 87, 189
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 465
TasI AATT 2 cut(s) 87, 189
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 2 cut(s) 49, 299
Tru1I TTAA 2 cut(s) 66, 390
Tru9I TTAA 2 cut(s) 66, 390
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 143, 146
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 4 cut(s) 42, 201, 434, 462
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 2 cut(s) 103, 340
XceI RCATGY 2 cut(s) 172, 248
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.