Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000248

Physical Location & Seq

Genomic Coordinates Forward (+)

7942080 .. 7943181

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAGCCGAGCAATGTTCTTCTTGATGATGACATGGTTGCTCGTGTAGATGGCCATACCGGAAGAGTGATGCAGATTGTAGATCCTACTCTTCTTGCCACTTTAGAAGAGGCAGCACCTACAACATCACAAAATATAGTGAACTACATCGGTGGTTACAATAATGAAATAGAAGCAGTTGAAGAAAACATTGACATTGAGAATTTAAGCAAGATGAACACTTATGTGTGGAAGTGCATACTTCCAATCCTTAAGATTGGACTTGCATGCTCGGAAGAATCACCAAGGAATAGAATGTCTATGGAGGAGGTCCATAGGAAGCTACACCATATAAAAGATGCTTACACCGGTGTTGACATCTGTCAAGAAAGGCCAAGAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

128

Amino Acids

14.51

Weight (kDa)

5.16

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica	MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica	Prupe.2G248300_v2.0.a1
pyrus_communis	pycom01g16800
rosa_chinensis	RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata	RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora	Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa	Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha	Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana	Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	202
AflII	CTTAAG	1 cut(s)	251
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	182
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	322, 384
AluI	AGCT	2 cut(s)	322, 384
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	52, 371
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	202
AsiGI	ACCGGT	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	54
BauI	CACGAG	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	44
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmsI	GCATC	2 cut(s)	60, 328
BoxI	GACNNNNGTC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	284
BsaWI	WCCGGW	2 cut(s)	59, 347
Bse118I	RCCGGY	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	125
BshFI	GGCC	2 cut(s)	54, 373
BshTI	ACCGGT	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	60, 348
BsnI	GGCC	2 cut(s)	54, 373
Bsp143I	GATC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	54, 373
BspPI	GGATC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	1 cut(s)	82
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	42
Bst6I	CTCTTC	3 cut(s)	58, 96, 102
BstAFI	CTTAAG	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	268
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	270
BstPAI	GACNNNNGTC	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	54, 373
Cac8I	GCNNGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	310
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	2 cut(s)	34, 267
CviJI	RGCY	5 cut(s)	7, 54, 322, 373, 384
CviKI_1	RGCY	5 cut(s)	7, 54, 322, 373, 384
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	3 cut(s)	58, 96, 102
EarI	CTCTTC	3 cut(s)	58, 96, 102
Eco130I	CCWWGG	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	37, 270
FatI	CATG	2 cut(s)	33, 266
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	54, 373
HapII	CCGG	2 cut(s)	60, 348
Hin1II	CATG	2 cut(s)	37, 270
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	2 cut(s)	60, 348
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	142, 355
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	23, 365
Hpy8I	GTNNAC	2 cut(s)	142, 355
HpyCH4V	TGCA	3 cut(s)	73, 237, 266
Hsp92II	CATG	2 cut(s)	37, 270
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	2 cut(s)	73, 361
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	2 cut(s)	60, 328
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	6 cut(s)	11, 75, 83, 119, 194, 287
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	1 cut(s)	202
MluNI	TGGCCA	1 cut(s)	54
MnlI	CCTC	3 cut(s)	103, 298, 301
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	2 cut(s)	206, 252
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	54
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	2 cut(s)	60, 348
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	37, 270
NmeAIII	GCCGAG	1 cut(s)	33
NspI	RCATGY	1 cut(s)	270
OliI	CACNNNNGTG	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	278
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	115
PshAI	GACNNNNGTC	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	206, 252
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	310
SetI	ASST	4 cut(s)	121, 312, 324, 386
SfaNI	GCATC	2 cut(s)	60, 328
SgrAI	CRCCGGYG	1 cut(s)	347
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	284
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	206, 252
Tru9I	TTAA	2 cut(s)	206, 252
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	17, 180, 230
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.