RchiOBHm_Chr1g0351981
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
45121347 .. 45130872
9526 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57773

Sequence Viewer

Length: 3159 bp
ATGGTGCTTCTTCATGAGTGTGCATTTTGGTTTATATGTGTGCATGTGATTACCCATCTCTTTCTTATCAACTTTTTCCTACCTACCACTACTGCTGCAAATGCATTTGGCAATGAAACCGACCGATTGGCTTTGCTCAAATTCAAAGAATCCATAGTCGCCGATCCACACGGGTTCTTGAACTCATGGAATGGATCTGTTCACTTCTGCAACTGGCATGGAATTACTTGCCGCAGAAGGCATCAAAGAGTAACAGCTTTGAACCTACCGGATGCTGATTTGGATGGAACCATATCACCTTACATTGGCAACCTCTCCTTTCTCAGGACCTTCCGCCTTTTAAACAACAGCTTCTCCGGCAAGATTCCACAACAAGTTGATCATTTGTTCCGACTGCGTCATCTCAACCTAAGTTCCAACATGTTGGAGGGGGAAATTCCAGTCAGCCTAACCTTCTGCTCGAAATTAAGCATCATAAGCATTGCATCTAACCGCCTTACTGGCAAAATTCCTTCTGAGATTGGCTCATTGATGAAGCTTCTGCATCTTGATCTTCAGAAAAACAATCTGACAGGAGGCATCCCACCTTCCTTGGGGAATCTTTCATCAATCACTCTACTTTCCTTGCAATATAATCATTTGGTGGGCAACATACCAGAGGAAATAGGCCGATTGAGAAGCTTATCTACGTTTGCAATTGGGGCCAATAAACTCTCAGGTATGATACCTCGCTCCATTTTTAACATATCATCTATAAAAATCTTCTCAGTTGCACTTAATGAGTTTAGGGGCAGTATTCCACCTGGTATAGGCCTAAACATGCCTAATCTCCTAAAAGTGTTCCTTGGGGCAAATAAATTCTCTGGGCAAATCCCGCCTTCATTTTCCAATGCTTCTCAGCTTCAGCAGTTTGATATTGAGGAAAATAATTTTGTTGGGCTAGTTCCAACAAGTTTTGGAAAACTTCCCCATCTCCAGTTTCTCGGCTCCAGTACGAATAATCTAGGAAGTAATTCATCTAATGATTTGGGATTTATAACATCCTTGACAAATTGCAGCAATCTGGAAATTCTTTCTCTCAGTTCTAACAATTTTGGAGGTGTTTTACCTAACTCTCTAGTCAATTTTTCCACCCACCTGACTAAATTATTCCTTGGGGGCAATCCAATAGGGGGAACGATTCTTGAAACATTAGGAAATCTCAACAATTTAATACAATTGAGCCTGGATTATAACTTATTCACAGGTATCATTCCAGCTTCTTTTGGAAAGTTACAAAAGCTGCAAGAATTATATTTGAATTCCAATAGATTATCAGGACGGATTCCATCTTCCCTAGGAAACCTCACCCAATTGTCTAGACTCTGGGTATTTGAAAATGAATTAGAAGGAAGCATTCCTCCAAATATTGGTAACTGCCCAAATCTGCGGGAGATGGATATATCACACAATAAGCTTAGTGGAGATATACCATCACAGGTCATTGGTCTGTCCTTCTCTGTCTTGCTCAAATTAGCGCAAAACTCGCTAACTGGCATTCTGCCTGCGGAAGTGGGTAAGCTGAAGAATATCAATATACTGGACATCTCTGATAATAATTTGACAGGAGGAATTCCAGATGTTATTGGAGGCTGTCAGGTCCTTGAATTTCTTTTACTACAAGGGAATCTCTTTCAAGGAATCATACCTACTTCTTTGGCTACTTTGAGAGGTCTTCAGTATCTAGATCTTTCACGAAACAACTTGTCAGGACATATTCCAAAAGACCTACAGAGACTTTCATTCCTGATATATTTGAACCTTTCGTCTAATAATCTGGAGGGTGAGGTACCCAAAGAAGGAGTTTTTCGAAACAAAAGTGCATTATCATTGGATGGAAATACCAAACTTTGTGGTGGTATTTCGGAATTGCAGCTACCAGCATGCCCCATCAAAGTACCAAAGCAGAGAAAGTTGCATGGTTTCAAACTAAAGTTCACAATTTCTTTAGTCGCTGGATGCTCTCTTCTGTTTGCAGTCATCTTAGCTCTTTATTGGGGGAGGAAAACTCAAAAGAAGAAACCATTATCTACAGTGTCATCAATCAACTTCATTTCAAGGGTTTCATACCAGACACTTCATCAAGCTACTGGCGGATTCTCTACGACCAATCAAATTGGATCAGGCAGTTTTGGCTGTGTATACAAAGGGATTCTTGATCAAGAACAAAACAATGTTGTTGCCATAAAGGTCCTCAACCTTCAACAAAAAGGAGCTTATAAGAGTTTCATGGCTGAATGCAATGCACTGAGAAATATCAGGCACAGGAATCTTGTGAAGATCTTAACATGTTGCTCCAGCATTGATTACAACGGTAATGAATTCAAAGCTCTAGTTTATGAGTATATGTCAAATGGAAGTTTAGAGAAGTGGCTGCATAGAGAAAACCAATCAAGGAGTTTGACGCTTCTTCAAAGACTGAATATTGTTATTGATACGGCTCTTGCATTGTGTTATCTTCATGACCATTGTGAACCACATATTATTCACGGTGACATGAAGCCAAGCAACGTTCTTCTTGATGATGACATGGTTGCTCATGTCGGTGATTTTGGGTTAGCAAGACTCATCCCACCGACCACTGACTCCTATGAGAATAAAAGCAGCACAGTCGGGATAAAAGGAACCATTGGCTATGCTGCTCCAGAGTATGCAGTTGGTGCTGAGTCATCAAAACAAGGGGATGTATATAGTTATGGGATCCTTGTGCTGGAATTGTTCACGGGAAAAAGACCAACCGATGAAATGTTTATAGACAATTGCAATATCCATACTTTTGTTAAGACGTCTATACAAGGAAGACTTATGCAAATTGTAGATCCTACTCTTATTGCCACTCTAGAAGAGACTGCAACTTCAACAACAAACAATGAAGCCAGCATCCATGGTTACAACAATGAAATCGAAGTTGATGAAGACAGCATTGACAATGAGAATTTAAGCATGATGAACACTTACGTGTGGAAATGCATACTTCCAACCCTTAAGATTGGACTTGCATGCTCGGAAGAATCACCAAGGAACAGGGTGTCTATGGAGGATGTCCATAGGGAGCTACACCATATAAAAAATGCTTACACTGGTGTTGACATCCGTCGAGAAAGGTCAAAAAGAAGCTAA

Protein Analysis

1052

Amino Acids

115.89

Weight (kDa)

8.24

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 39 - 77 8.7e-13 Leucine rich repeat N-terminal domain
LRR_14 PF23598 100 - 232 6e-08 Leucine-rich repeat region
LRR_14 PF23598 198 - 409 2.1e-06 Leucine-rich repeat region
LRR_8 PF13855 379 - 438 8.2e-09 Leucine rich repeat
LRR_14 PF23598 394 - 483 6.3e-07 Leucine-rich repeat region
LRR_14 PF23598 470 - 606 2e-06 Leucine-rich repeat region
LRR_8 PF13855 548 - 606 4.7e-07 Leucine rich repeat
Pkinase PF00069 714 - 928 5.7e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 715 - 956 4.5e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31390 FvH4_5g31630 FvH4_5g31631 FvH4_7g24151 FvH4_7g24160 FvH4_7g24240 FvH4_7g24242 FvH4_7g24243 FvH4_7g24510 FvH4_7g24920 FvH4_7g24920 FvH4_7g24920 FvH4_7g29910
malus_domestica MD01G1131800.v1.1 MD01G1150000.v1.1 MD01G1151300.v1.1
prunus_persica Prupe.2G248300_v2.0.a1
pyrus_communis pycom01g16800
rosa_chinensis RchiOBHm_Chr1g0339821 RchiOBHm_Chr1g0345151 RchiOBHm_Chr1g0346851 RchiOBHm_Chr1g0351981 RchiOBHm_Chr1g0369731 RchiOBHm_Chr1g0369841 RchiOBHm_Chr1g0369861 RchiOBHm_Chr1g0369931 RchiOBHm_Chr1g0369961 RchiOBHm_Chr1g0370261 RchiOBHm_Chr1g0370281 RchiOBHm_Chr5g0076391 RchiOBHm_Chr6g0248051 RchiOBHm_Chr6g0248071
rosa_laevigata RLG00000002548 RLG00000013479 RLG00000027042 RLG00000027045 RLG00000027047 RLG00000027060 RLG00000027063 RLG00000027082 RLG00000027084 RLG00000027087 RLG00000027089 RLG00000027090 RLG00000027091 RLG00000027092 RLG00000027094 RLG00000027097 RLG00000027100 RLG00000027101 RLG00000027111 RLG00000028769 RLG00000028851 RLG00000029244 RLG00000030021
rosa_multiflora Rmu_co7968444.1_g000001 Rmu_co8060564.1_g000001 Rmu_co8098766.1_g000001 Rmu_co8172886.1_g000001 Rmu_co8291893.1_g000001 Rmu_co8327887.1_g000001 Rmu_co8406981.1_g000001 Rmu_co8449189.1_g000001 Rmu_co8470871.1_g000001 Rmu_sc0000756.1_g000006 Rmu_sc0001154.1_g000028 Rmu_sc0001565.1_g000055 Rmu_sc0001657.1_g000002 Rmu_sc0002095.1_g000014 Rmu_sc0002147.1_g000001 Rmu_sc0002705.1_g000004 Rmu_sc0002705.1_g000005 Rmu_sc0004087.1_g000025 Rmu_sc0005500.1_g000022 Rmu_sc0006707.1_g000005 Rmu_sc0006707.1_g000009 Rmu_sc0008140.1_g000012 Rmu_sc0008140.1_g000019 Rmu_sc0016176.1_g000001 Rmu_sc0016906.1_g000006 Rmu_sc0028980.1_g000001 Rmu_sc0041369.1_g000001
rosa_roxburghii Rroxscaffold_3G00232610 Rroxscaffold_4G00286690 Rroxscaffold_4G00286920 Rroxscaffold_4G00286930 Rroxscaffold_4G00286960 Rroxscaffold_4G00286980 Rroxscaffold_4G00287030 Rroxscaffold_4G00287040 Rroxscaffold_4G00287070 Rroxscaffold_4G00287090 Rroxscaffold_4G00287330 Rroxscaffold_4G00287430 Rroxscaffold_4G00303380 Rroxscaffold_4G00303400 Rroxscaffold_4G00303410 Rroxscaffold_4G00308100 Rroxscaffold_4G00308480 Rroxscaffold_4G00313700 Rroxscaffold_4G00322910 Rroxscaffold_7G00190680 Rroxscaffold_7G00193490
rosa_rugosa Rorug01G0032200 Rorug01G0139400.1 Rorug01G0139600.1 Rorug01G0139700.1 Rorug01G0184400 Rorug01G0351900 Rorug01G0351900 Rorug01G0352600 Rorug01G0352600 Rorug01G0352800 Rorug01G0355300 Rorug01G0355400 Rorug01G0356700.1 Rorug01G0356800 Rorug06G0090600 Rorug07G0276100
rosa_samantha Rh1AG201900 Rh1AG361300 Rh1AG365100 Rh6AG204000
rosa_wichuraiana Rw0G015480 Rw1G007000 Rw1G008190 Rw1G012880 Rw1G012990 Rw1G016950 Rw1G031720 Rw1G031800 Rw1G031820 Rw1G032020 Rw1G032180 Rw6G017720 Rw7G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1037, 1233, 2259
AatII GACGTC 1 cut(s) 2828
Acc65I GGTACC 1 cut(s) 1828
AccB1I GGYRCC 1 cut(s) 1828
AccB7I CCANNNNNTGG 1 cut(s) 1409
AccI GTMKAC 1 cut(s) 2181
AciI CCGC 7 cut(s) 232, 334, 493, 875, 1429, 1547, 2133
AclI AACGTT 1 cut(s) 2550
AclWI GGATC 6 cut(s) 158, 202, 2167, 2734, 2747, 2852
AcuI CTGAAG 4 cut(s) 539, 887, 1583, 1700
AcyI GRCGYC 1 cut(s) 2825
AfaI GTAC 3 cut(s) 994, 1830, 1938
AfiI CCNNNNNNNGG 8 cut(s) 305, 324, 593, 809, 1172, 1409, 1838, 2749
AflII CTTAAG 1 cut(s) 3023
AflIII ACRYGT 3 cut(s) 420, 2327, 2997
AjnI CCWGG 2 cut(s) 802, 1224
AleI CACNNNNGTG 1 cut(s) 2996
Alw26I GTCTC 2 cut(s) 1768, 2879
AlwI GGATC 6 cut(s) 158, 202, 2167, 2734, 2747, 2852
AoxI GGCC 3 cut(s) 667, 702, 811
ApeKI GCWGC 7 cut(s) 95, 1056, 1282, 1912, 2413, 2643, 2678
Asp700I GAANNNNTTC 1 cut(s) 1012
Asp718I GGTACC 1 cut(s) 1828
AspA2I CCTAGG 1 cut(s) 1336
AspLEI GCGC 1 cut(s) 1519
AspS9I GGNCC 4 cut(s) 327, 702, 1639, 2230
AsuHPI GGTGA 6 cut(s) 288, 1339, 1835, 2543, 2597, 3045
AsuII TTCGAA 1 cut(s) 1849
AvaII GGWCC 3 cut(s) 327, 1639, 2230
AvrII CCTAGG 1 cut(s) 1336
BamHI GGATCC 1 cut(s) 2739
BanI GGYRCC 1 cut(s) 1828
BarI GAAGNNNNNNTAC 2 cut(s) 670, 702
BbsI GAAGAC 3 cut(s) 1706, 2845, 2961
BbvI GCAGC 7 cut(s) 82, 1068, 1269, 1924, 2400, 2655, 2665
BccI CCATC 8 cut(s) 63, 278, 978, 1336, 1429, 1480, 1868, 1937
BceAI ACGGC 1 cut(s) 2493
BcgI CGANNNNNNTGC 2 cut(s) 2632, 2666
BciT130I CCWGG 2 cut(s) 804, 1226
BclI TGATCA 2 cut(s) 379, 2197
BcoDI GTCTC 2 cut(s) 1768, 2879
BfaI CTAG 8 cut(s) 941, 1004, 1118, 1337, 1359, 1724, 2372, 2879
BfmI CTRYAG 2 cut(s) 1769, 2070
BfrI CTTAAG 1 cut(s) 3023
BglI GCCNNNNNGGC 1 cut(s) 501
BglII AGATCT 2 cut(s) 1726, 2319
BisI GCNGC 8 cut(s) 96, 232, 1057, 1283, 1913, 2414, 2644, 2679
BlnI CCTAGG 1 cut(s) 1336
BlsI GCNGC 8 cut(s) 97, 233, 1058, 1284, 1914, 2415, 2645, 2680
Bme1390I CCNGG 2 cut(s) 804, 1226
Bme18I GGWCC 3 cut(s) 327, 1639, 2230
BmgT120I GGNCC 4 cut(s) 327, 702, 1639, 2230
BmiI GGNNCC 6 cut(s) 289, 703, 988, 1830, 2665, 2741
BmrFI CCNGG 2 cut(s) 804, 1226
BmsI GCATC 8 cut(s) 250, 262, 480, 494, 553, 588, 1988, 2928
BoxI GACNNNNGTC 1 cut(s) 3132
BpiI GAAGAC 3 cut(s) 1706, 2845, 2961
BplI GAGNNNNNCTC 4 cut(s) 509, 541, 2032, 2064
BpmI CTGGAG 5 cut(s) 959, 973, 1838, 2320, 2667
Bpu14I TTCGAA 1 cut(s) 1849
BsaAI YACGTR 1 cut(s) 2998
BsaHI GRCGYC 1 cut(s) 2825
BsaJI CCNNGG 6 cut(s) 591, 844, 1153, 1336, 2923, 3056
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 8 cut(s) 305, 324, 593, 809, 1172, 1409, 1838, 2749
Bse1I ACTGG 9 cut(s) 218, 440, 505, 976, 990, 1537, 1584, 2134, 3124
Bse3DI GCAATG 3 cut(s) 118, 480, 2287
BseBI CCWGG 2 cut(s) 804, 1226
BseDI CCNNGG 6 cut(s) 591, 844, 1153, 1336, 2923, 3056
BseLI CCNNNNNNNGG 8 cut(s) 305, 324, 593, 809, 1172, 1409, 1838, 2749
BseMI GCAATG 3 cut(s) 118, 480, 2287
BseMII CTCAG 8 cut(s) 337, 507, 729, 780, 911, 1093, 2279, 2694
BseNI ACTGG 9 cut(s) 218, 440, 505, 976, 990, 1537, 1584, 2134, 3124
BseXI GCAGC 7 cut(s) 82, 1068, 1269, 1924, 2400, 2655, 2665
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 669, 704, 813
BshNI GGYRCC 1 cut(s) 1828
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 269, 357
BslI CCNNNNNNNGG 8 cut(s) 305, 324, 593, 809, 1172, 1409, 1838, 2749
BsmAI GTCTC 2 cut(s) 1768, 2879
BsmI GAATGC 3 cut(s) 1395, 1536, 2282
BsnI GGCC 3 cut(s) 669, 704, 813
Bsp119I TTCGAA 1 cut(s) 1849
Bsp19I CCATGG 1 cut(s) 2923
BspACI CCGC 7 cut(s) 232, 334, 493, 875, 1429, 1547, 2133
BspANI GGCC 3 cut(s) 669, 704, 813
BspCNI CTCAG 8 cut(s) 336, 508, 728, 779, 910, 1092, 2280, 2695
BspHI TCATGA 2 cut(s) 13, 2500
BspLI GGNNCC 6 cut(s) 289, 703, 988, 1830, 2665, 2741
BspPI GGATC 6 cut(s) 158, 202, 2167, 2734, 2747, 2852
BspT104I TTCGAA 1 cut(s) 1849
BspT107I GGYRCC 1 cut(s) 1828
BspTI CTTAAG 1 cut(s) 3023
BsrDI GCAATG 3 cut(s) 118, 480, 2287
BsrI ACTGG 9 cut(s) 218, 440, 505, 976, 990, 1537, 1584, 2134, 3124
BssECI CCNNGG 6 cut(s) 591, 844, 1153, 1336, 2923, 3056
BssNAI GTATAC 1 cut(s) 2182
BssNI GRCGYC 1 cut(s) 2825
BssT1I CCWWGG 6 cut(s) 591, 844, 1153, 1336, 2923, 3056
Bst1107I GTATAC 1 cut(s) 2182
Bst2UI CCWGG 2 cut(s) 804, 1226
Bst4CI ACNGT 4 cut(s) 2074, 2354, 2531, 2650
Bst6I CTCTTC 2 cut(s) 2010, 2877
BstACI GRCGYC 1 cut(s) 2825
BstAFI CTTAAG 1 cut(s) 3023
BstAPI GCANNNNNTGC 1 cut(s) 2699
BstBAI YACGTR 1 cut(s) 2998
BstBI TTCGAA 1 cut(s) 1849
BstC8I GCNNGC 4 cut(s) 1545, 1924, 2917, 3040
BstDSI CCRYGG 1 cut(s) 2923
BstENI CCTNNNNNAGG 2 cut(s) 322, 807
BstHHI GCGC 1 cut(s) 1519
BstMAI GTCTC 2 cut(s) 1768, 2879
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 9 cut(s) 101, 357, 477, 501, 701, 874, 1525, 2172, 2699
BstNI CCWGG 2 cut(s) 804, 1226
BstNSI RCATGY 6 cut(s) 47, 424, 823, 1926, 2331, 3042
BstPAI GACNNNNGTC 1 cut(s) 3132
BstSCI CCNGG 2 cut(s) 802, 1224
BstSFI CTRYAG 2 cut(s) 1769, 2070
BstV1I GCAGC 7 cut(s) 82, 1068, 1269, 1924, 2400, 2655, 2665
BstV2I GAAGAC 3 cut(s) 1706, 2845, 2961
BstX2I RGATCY 5 cut(s) 194, 1726, 2319, 2739, 2857
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 5 cut(s) 194, 1726, 2319, 2739, 2857
BstZ17I GTATAC 1 cut(s) 2182
BsuRI GGCC 3 cut(s) 669, 704, 813
BtgI CCRYGG 1 cut(s) 2923
BtsIMutI CAGTG 4 cut(s) 2079, 2285, 2619, 3117
Cac8I GCNNGC 4 cut(s) 1545, 1924, 2917, 3040
CciI TCATGA 2 cut(s) 13, 2500
CfoI GCGC 1 cut(s) 1519
Cfr13I GGNCC 4 cut(s) 327, 702, 1639, 2230
CseI GACGC 2 cut(s) 386, 2452
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 3 cut(s) 993, 1829, 1937
CspCI CAANNNNNGTGG 4 cut(s) 573, 608, 1873, 1908
CviQI GTAC 3 cut(s) 993, 1829, 1937
DraI TTTAAA 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 2010, 2877
EarI CTCTTC 2 cut(s) 2010, 2877
EciI GGCGGA 2 cut(s) 323, 2148
Eco130I CCWWGG 6 cut(s) 591, 844, 1153, 1336, 2923, 3056
Eco147I AGGCCT 1 cut(s) 813
Eco47I GGWCC 3 cut(s) 327, 1639, 2230
Eco57I CTGAAG 4 cut(s) 539, 887, 1583, 1700
EcoNI CCTNNNNNAGG 2 cut(s) 322, 807
EcoO109I RGGNCCY 3 cut(s) 327, 1639, 2230
EcoRI GAATTC 3 cut(s) 1300, 1611, 2360
EcoRII CCWGG 2 cut(s) 802, 1224
EcoT14I CCWWGG 6 cut(s) 591, 844, 1153, 1336, 2923, 3056
EcoT22I ATGCAT 2 cut(s) 106, 3011
ErhI CCWWGG 6 cut(s) 591, 844, 1153, 1336, 2923, 3056
FalI AAGNNNNNCTT 6 cut(s) 828, 860, 2178, 2210, 2826, 2858
FauI CCCGC 2 cut(s) 882, 1422
FbaI TGATCA 2 cut(s) 379, 2197
FblI GTMKAC 1 cut(s) 2181
Fnu4HI GCNGC 8 cut(s) 96, 232, 1057, 1283, 1913, 2414, 2644, 2679
Fsp4HI GCNGC 8 cut(s) 96, 232, 1057, 1283, 1913, 2414, 2644, 2679
FspBI CTAG 8 cut(s) 941, 1004, 1118, 1337, 1359, 1724, 2372, 2879
GlaI GCGC 1 cut(s) 1518
GluI GCNGC 8 cut(s) 96, 232, 1057, 1283, 1913, 2414, 2644, 2679
GsuI CTGGAG 5 cut(s) 959, 973, 1838, 2320, 2667
HaeIII GGCC 3 cut(s) 669, 704, 813
HapII CCGG 2 cut(s) 269, 357
HgaI GACGC 2 cut(s) 386, 2452
HhaI GCGC 1 cut(s) 1519
Hin1I GRCGYC 1 cut(s) 2825
Hin6I GCGC 1 cut(s) 1517
HinP1I GCGC 1 cut(s) 1517
HincII GTYRAC 1 cut(s) 3127
HindII GTYRAC 1 cut(s) 3127
HindIII AAGCTT 3 cut(s) 536, 679, 1454
HpaII CCGG 2 cut(s) 269, 357
HphI GGTGA 6 cut(s) 288, 1339, 1835, 2543, 2597, 3045
Hpy166II GTNNAC 6 cut(s) 202, 1977, 2182, 2513, 2760, 3127
Hpy188I TCNGA 7 cut(s) 392, 517, 558, 570, 1591, 1906, 3046
Hpy8I GTNNAC 6 cut(s) 202, 1977, 2182, 2513, 2760, 3127
Hpy99I CGWCG 1 cut(s) 3138
HpyCH4III ACNGT 4 cut(s) 2074, 2354, 2531, 2650
HpyCH4IV ACGT 4 cut(s) 689, 2550, 2825, 2997
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 357, 477, 501, 701, 874, 1525, 2172, 2699
HpySE526I ACGT 4 cut(s) 689, 2550, 2825, 2997
Hsp92I GRCGYC 1 cut(s) 2825
HspAI GCGC 1 cut(s) 1517
KpnI GGTACC 1 cut(s) 1832
Ksp22I TGATCA 2 cut(s) 379, 2197
LmnI GCTCC 6 cut(s) 737, 992, 2252, 2339, 2686, 3091
Lsp1109I GCAGC 7 cut(s) 82, 1068, 1269, 1924, 2400, 2655, 2665
LweI GCATC 8 cut(s) 250, 262, 480, 494, 553, 588, 1988, 2928
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 8 cut(s) 941, 1004, 1118, 1337, 1359, 1724, 2372, 2879
MaeII ACGT 4 cut(s) 689, 2550, 2825, 2997
MaeIII GTNAC 5 cut(s) 250, 1272, 1412, 2531, 2927
MfeI CAATTG 4 cut(s) 696, 1217, 1352, 2797
MflI RGATCY 5 cut(s) 194, 1726, 2319, 2739, 2857
MlyI GAGTC 4 cut(s) 1356, 2598, 2618, 2714
MmeI TCCRAC 5 cut(s) 405, 415, 441, 971, 3041
Mph1103I ATGCAT 2 cut(s) 106, 3011
MroXI GAANNNNTTC 1 cut(s) 1012
MseI TTAA 9 cut(s) 341, 467, 741, 777, 1211, 2324, 2820, 2978, 3024
MslI CAYNNNNRTG 3 cut(s) 18, 2583, 2996
MspCI CTTAAG 1 cut(s) 3023
MspI CCGG 2 cut(s) 269, 357
MspR9I CCNGG 2 cut(s) 804, 1226
MunI CAATTG 4 cut(s) 696, 1217, 1352, 2797
Mva1269I GAATGC 3 cut(s) 1395, 1536, 2282
MvaI CCWGG 2 cut(s) 804, 1226
MwoI GCNNNNNNNGC 9 cut(s) 101, 357, 477, 501, 701, 874, 1525, 2172, 2699
NcoI CCATGG 1 cut(s) 2923
NlaIV GGNNCC 6 cut(s) 289, 703, 988, 1830, 2665, 2741
NmeAIII GCCGAG 1 cut(s) 963
NmuCI GTSAC 1 cut(s) 2531
NsiI ATGCAT 2 cut(s) 106, 3011
NspI RCATGY 6 cut(s) 47, 424, 823, 1926, 2331, 3042
NspV TTCGAA 1 cut(s) 1849
OliI CACNNNNGTG 1 cut(s) 2996
PaeI GCATGC 2 cut(s) 1926, 3042
PagI TCATGA 2 cut(s) 13, 2500
PceI AGGCCT 1 cut(s) 813
PciI ACATGT 2 cut(s) 420, 2327
PctI GAATGC 3 cut(s) 1395, 1536, 2282
PdmI GAANNNNTTC 1 cut(s) 1012
PflFI GACNNNGTC 1 cut(s) 396
PflMI CCANNNNNTGG 1 cut(s) 1409
PkrI GCNGC 8 cut(s) 97, 233, 1058, 1284, 1914, 2415, 2645, 2680
PleI GAGTC 4 cut(s) 1356, 2598, 2618, 2713
PpsI GAGTC 4 cut(s) 1356, 2598, 2618, 2713
Ppu21I YACGTR 1 cut(s) 2998
PpuMI RGGWCCY 3 cut(s) 327, 1639, 2230
PscI ACATGT 2 cut(s) 420, 2327
PshAI GACNNNNGTC 1 cut(s) 3132
PsiI TTATAA 3 cut(s) 1037, 1233, 2259
Psp1406I AACGTT 1 cut(s) 2550
Psp5II RGGWCCY 3 cut(s) 327, 1639, 2230
Psp6I CCWGG 2 cut(s) 802, 1224
PspGI CCWGG 2 cut(s) 802, 1224
PspN4I GGNNCC 6 cut(s) 289, 703, 988, 1830, 2665, 2741
PspPI GGNCC 4 cut(s) 327, 702, 1639, 2230
PspPPI RGGWCCY 3 cut(s) 327, 1639, 2230
PsuI RGATCY 5 cut(s) 194, 1726, 2319, 2739, 2857
PsyI GACNNNGTC 1 cut(s) 396
RsaI GTAC 3 cut(s) 994, 1830, 1938
RsaNI GTAC 3 cut(s) 993, 1829, 1937
RseI CAYNNNNRTG 3 cut(s) 18, 2583, 2996
SaqAI TTAA 9 cut(s) 341, 467, 741, 777, 1211, 2324, 2820, 2978, 3024
SatI GCNGC 8 cut(s) 96, 232, 1057, 1283, 1913, 2414, 2644, 2679
Sau96I GGNCC 4 cut(s) 327, 702, 1639, 2230
SchI GAGTC 4 cut(s) 1356, 2598, 2618, 2714
ScrFI CCNGG 2 cut(s) 804, 1226
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 8 cut(s) 250, 262, 480, 494, 553, 588, 1988, 2928
SfcI CTRYAG 2 cut(s) 1769, 2070
SfuI TTCGAA 1 cut(s) 1849
SinI GGWCC 3 cut(s) 327, 1639, 2230
SmiMI CAYNNNNRTG 3 cut(s) 18, 2583, 2996
SmlI CTYRAG 1 cut(s) 3023
SmoI CTYRAG 1 cut(s) 3023
SphI GCATGC 2 cut(s) 1926, 3042
SseBI AGGCCT 1 cut(s) 813
SsiI CCGC 7 cut(s) 232, 334, 493, 875, 1429, 1547, 2133
SspI AATATT 2 cut(s) 1408, 2464
SspMI CTAG 8 cut(s) 941, 1004, 1118, 1337, 1359, 1724, 2372, 2879
StuI AGGCCT 1 cut(s) 813
StyD4I CCNGG 2 cut(s) 802, 1224
StyI CCWWGG 6 cut(s) 591, 844, 1153, 1336, 2923, 3056
TaaI ACNGT 4 cut(s) 2074, 2354, 2531, 2650
TaiI ACGT 4 cut(s) 692, 2553, 2828, 3000
TaqI TCGA 4 cut(s) 461, 1849, 2943, 3136
TaqII GACCGA 1 cut(s) 138
TauI GCSGC 1 cut(s) 234
Tru1I TTAA 9 cut(s) 341, 467, 741, 777, 1211, 2324, 2820, 2978, 3024
Tru9I TTAA 9 cut(s) 341, 467, 741, 777, 1211, 2324, 2820, 2978, 3024
TscAI CASTG 4 cut(s) 2079, 2292, 2626, 3124
TseFI GTSAC 1 cut(s) 2531
TseI GCWGC 7 cut(s) 95, 1056, 1282, 1912, 2413, 2643, 2678
Tsp45I GTSAC 1 cut(s) 2531
TspGWI ACGGA 2 cut(s) 1336, 3122
TspRI CASTG 4 cut(s) 2079, 2292, 2626, 3124
Tth111I GACNNNGTC 1 cut(s) 396
Van91I CCANNNNNTGG 1 cut(s) 1409
Vha464I CTTAAG 1 cut(s) 3023
VpaK11BI GGWCC 3 cut(s) 327, 1639, 2230
XagI CCTNNNNNAGG 2 cut(s) 322, 807
XbaI TCTAGA 3 cut(s) 1358, 1723, 2878
XceI RCATGY 6 cut(s) 47, 424, 823, 1926, 2331, 3042
XmaJI CCTAGG 1 cut(s) 1336
XmiI GTMKAC 1 cut(s) 2181
XmnI GAANNNNTTC 1 cut(s) 1012
XspI CTAG 8 cut(s) 941, 1004, 1118, 1337, 1359, 1724, 2372, 2879
ZraI GACGTC 1 cut(s) 2826
Zsp2I ATGCAT 2 cut(s) 106, 3011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.