FvH4_5g17710

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000217
Physical Location & Seq
Reverse (-)
10149885 .. 10151381
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17710.t1

Sequence Viewer

Length: 1497 bp
ATGGCTGGTGGAGAAGAGATTCAAGGAGTCAATGTGTTACAAGCATCACTGCTTGGCAAGTCTTTTGCTCTCAAGTCTGTGAACAACAGCAAGTACATGCGGTTCCAAAGTGAAGAAGGTGAGAGGCAGGGCTTTGTGCGGTTCACAACAACCGATGTTGTGCAGGAGCCCAGAGCCAAGTTTGAAGTGGAGGCGGCGGATGGCGGCGCCACGAAGGGGATGGTGCATATCCGGTGCTGCTACAACAACAAATACTTGAGGAGGTGGGACATCGACCACCACTGGATTGTAGCCGGTGGTGACAAAAAGGTGGAAGATCAAACCCACTGGACATGCACACTGTTCGAGCCTGTGCTAGAAACACCGGCAGATAGCGATAAGGACACCAAGGCAGTCATCCGGCTGCGCCACGTCCAGCTTGGACGCTATGTCATGCAGTTCACCCCTCATGAGGACTTCAAAGAATGCTTGTTCCCCATGTCCGACAAGCCTTATAACGGCAACTATGATCTCTTCGAAGTCCTGAATTGGGCGTCCTTGGTGGTGCTGCCAAAGTATGTTGCATTCAAAGGCAACAATGGAAAATATCTAAAGGCGGATCCAAGTACTAAACAGCTGAGATTCAACTCCACTGACATTGGGGAGGAAGGTGTGGCAATGGAGGTCGAATCCTTTGCAGATGGATATGTTCGCATTAAGGGCTTTAAGCATTCCGATGGGCTTTACTGGGGTACTATTCCTTGGTGGTTTAATAGTCTTGCAATGAATGGAACGGTTGGATCCGGAACCAGTCTAGATCTCAATACAGCATGGTTTTTGCCGGTCAAGGTTGAAGATAATGTGATCGCTCTCAAACACTTTTCTACGCACAAGTTCTGCCGTAGAGGTGTCACTCTCTACATCGTTGAAGAGCCTGAGGAGTTCATAGCTAACGCAAGTAGTATTACAGAAGACACAAAACTGGAGATGCATGAGGCTGTTATCAAAAGGACCATCTCCATGAATTACCGCCTCGACGATGCCAGGATCTACAACTTGGCCCCCGTCGCGTTAGACAGGTTCACACACGATAACCATGACGACCATGAGATCTCTAAAACGGTCACGCTCACCTACAGAAATGATGTCACTACTAACTGGGAGGCCAGCAATACGTGGACGGTGGGTGTTTCGGTCTCGATCGAGGTGGAAGCGATTCCATTCATCTCTAGTGTCTCCGTCGAAATGTCGGCGTCGTTTGGCGGATCATACACTTGGGGAGAAGCAAAGACGCAGGGACATGATATCTCGGAGTCGGATGTGTATACAGTGAGGGGAAAGCATAGGCTGACTGTGAGCAAACTTGCCACAAGGGGTCATTGTGACGTCCCTTACTCTTACGTTCAGACAGACTATCTCCAAAACGGCCAAATTATCACCAGTGAAAAGGCTGATGGCGTTTTCAGAGGCGTCAATTGCTTCGACATCCACACCGAGTCCGACCAAACACCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

499

Amino Acids

56.28

Weight (kDa)

5.55

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 19 - 175 8.4e-27 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AatII GACGTC 1 cut(s) 1368
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 1304
AccII CGCG 1 cut(s) 1049
AccIII TCCGGA 1 cut(s) 782
AciI CCGC 8 cut(s) 100, 139, 194, 197, 204, 596, 1009, 1242
AclWI GGATC 6 cut(s) 593, 606, 774, 787, 1034, 1252
AcoI YGGCCR 1 cut(s) 1405
AcyI GRCGYC 5 cut(s) 207, 533, 1232, 1365, 1449
AfaI GTAC 3 cut(s) 95, 607, 733
AfiI CCNNNNNNNGG 4 cut(s) 216, 451, 497, 529
AgsI TTSAA 7 cut(s) 23, 185, 460, 568, 625, 833, 908
AhdI GACNNNNNGTC 1 cut(s) 428
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 1022
AleI CACNNNNGTG 1 cut(s) 1492
AluBI AGCT 3 cut(s) 418, 616, 929
AluI AGCT 3 cut(s) 418, 616, 929
Alw26I GTCTC 2 cut(s) 1180, 1219
AlwI GGATC 6 cut(s) 593, 606, 774, 787, 1034, 1252
Aor13HI TCCGGA 1 cut(s) 782
AoxI GGCC 3 cut(s) 1038, 1143, 1405
ApeKI GCWGC 3 cut(s) 237, 403, 547
Asp700I GAANNNNTTC 2 cut(s) 18, 1194
AspLEI GCGC 2 cut(s) 209, 408
AspS9I GGNCC 2 cut(s) 990, 1039
AsuHPI GGTGA 5 cut(s) 131, 311, 433, 1102, 1408
AsuII TTCGAA 1 cut(s) 516
AvaII GGWCC 1 cut(s) 990
AxyI CCTNAGG 1 cut(s) 915
BamHI GGATCC 2 cut(s) 598, 779
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 957
BbvI GCAGC 3 cut(s) 224, 390, 534
BccI CCATC 6 cut(s) 194, 214, 674, 710, 1001, 1427
BceAI ACGGC 3 cut(s) 514, 864, 1420
BcgI CGANNNNNNTGC 4 cut(s) 325, 359, 656, 690
BciT130I CCWGG 1 cut(s) 1024
BcoDI GTCTC 2 cut(s) 1180, 1219
BfaI CTAG 3 cut(s) 356, 794, 1209
BfmI CTRYAG 1 cut(s) 1114
BfoI RGCGCY 1 cut(s) 210
BglII AGATCT 2 cut(s) 796, 1089
BisI GCNGC 5 cut(s) 195, 205, 238, 404, 548
BlsI GCNGC 5 cut(s) 196, 206, 239, 405, 549
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 1 cut(s) 1024
Bme18I GGWCC 1 cut(s) 990
BmeRI GACNNNNNGTC 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 990, 1039
BmiI GGNNCC 7 cut(s) 104, 168, 208, 600, 781, 787, 1041
BmrFI CCNGG 1 cut(s) 1024
BmrI ACTGGG 2 cut(s) 736, 1147
BmsI GCATC 3 cut(s) 53, 957, 1009
BmuI ACTGGG 2 cut(s) 736, 1147
BpiI GAAGAC 1 cut(s) 957
BpmI CTGGAG 1 cut(s) 983
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 56, 277
BsaAI YACGTR 1 cut(s) 1155
BsaHI GRCGYC 5 cut(s) 207, 533, 1232, 1365, 1449
BsaI GGTCTC 1 cut(s) 1180
BsaJI CCNNGG 3 cut(s) 387, 537, 740
BsaWI WCCGGW 2 cut(s) 231, 782
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 451, 497, 529
Bse118I RCCGGY 3 cut(s) 293, 364, 820
Bse1I ACTGG 7 cut(s) 287, 332, 731, 789, 966, 1142, 1419
Bse21I CCTNAGG 1 cut(s) 915
Bse3DI GCAATG 2 cut(s) 663, 768
BseAI TCCGGA 1 cut(s) 782
BseBI CCWGG 1 cut(s) 1024
BseDI CCNNGG 3 cut(s) 387, 537, 740
BseGI GGATG 5 cut(s) 205, 225, 396, 1303, 1464
BseLI CCNNNNNNNGG 4 cut(s) 216, 451, 497, 529
BseMI GCAATG 2 cut(s) 663, 768
BseMII CTCAG 2 cut(s) 608, 906
BseNI ACTGG 7 cut(s) 287, 332, 731, 789, 966, 1142, 1419
BseRI GAGGAG 2 cut(s) 274, 932
BseXI GCAGC 3 cut(s) 224, 390, 534
BsgI GTGCAG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 1049
Bsh1285I CGRYCG 1 cut(s) 1182
BshFI GGCC 3 cut(s) 1040, 1145, 1407
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 1182
BsiSI CCGG 6 cut(s) 232, 294, 365, 400, 783, 821
BslFI GGGAC 3 cut(s) 281, 1290, 1352
BslI CCNNNNNNNGG 4 cut(s) 216, 451, 497, 529
BsmAI GTCTC 2 cut(s) 1180, 1219
BsmFI GGGAC 3 cut(s) 281, 1290, 1352
BsmI GAATGC 3 cut(s) 470, 563, 709
BsnI GGCC 3 cut(s) 1040, 1145, 1407
Bso31I GGTCTC 1 cut(s) 1180
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 171
Bsp13I TCCGGA 1 cut(s) 782
BspACI CCGC 8 cut(s) 100, 139, 194, 197, 204, 596, 1009, 1242
BspANI GGCC 3 cut(s) 1040, 1145, 1407
BspCNI CTCAG 2 cut(s) 609, 907
BspEI TCCGGA 1 cut(s) 782
BspFNI CGCG 1 cut(s) 1049
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 7 cut(s) 104, 168, 208, 600, 781, 787, 1041
BspPI GGATC 6 cut(s) 593, 606, 774, 787, 1034, 1252
BspQI GCTCTTC 1 cut(s) 903
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 1180
BsrDI GCAATG 2 cut(s) 663, 768
BsrFI RCCGGY 3 cut(s) 293, 364, 820
BsrI ACTGG 7 cut(s) 287, 332, 731, 789, 966, 1142, 1419
BssAI RCCGGY 3 cut(s) 293, 364, 820
BssECI CCNNGG 3 cut(s) 387, 537, 740
BssNAI GTATAC 1 cut(s) 1305
BssNI GRCGYC 5 cut(s) 207, 533, 1232, 1365, 1449
BssT1I CCWWGG 3 cut(s) 387, 537, 740
Bst1107I GTATAC 1 cut(s) 1305
Bst2UI CCWGG 1 cut(s) 1024
Bst4CI ACNGT 7 cut(s) 342, 775, 1102, 1162, 1309, 1333, 1494
Bst6I CTCTTC 3 cut(s) 9, 518, 903
BstACI GRCGYC 5 cut(s) 207, 533, 1232, 1365, 1449
BstBAI YACGTR 1 cut(s) 1155
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 1147
BstDEI CTNAG 2 cut(s) 617, 915
BstF5I GGATG 5 cut(s) 205, 225, 396, 1303, 1464
BstFNI CGCG 1 cut(s) 1049
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 408
BstMAI GTCTC 2 cut(s) 1180, 1219
BstMCI CGRYCG 1 cut(s) 1182
BstMWI GCNNNNNNNGC 3 cut(s) 699, 1046, 1455
BstNI CCWGG 1 cut(s) 1024
BstNSI RCATGY 2 cut(s) 100, 336
BstSCI CCNGG 1 cut(s) 1022
BstSFI CTRYAG 1 cut(s) 1114
BstUI CGCG 1 cut(s) 1049
BstV1I GCAGC 3 cut(s) 224, 390, 534
BstV2I GAAGAC 1 cut(s) 957
BstX2I RGATCY 5 cut(s) 598, 779, 796, 1026, 1089
BstYI RGATCY 5 cut(s) 598, 779, 796, 1026, 1089
BstZ17I GTATAC 1 cut(s) 1305
Bsu36I CCTNAGG 1 cut(s) 915
BsuRI GGCC 3 cut(s) 1040, 1145, 1407
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 5 cut(s) 205, 225, 396, 1303, 1464
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 8 cut(s) 47, 280, 325, 338, 630, 1314, 1426, 1490
Cac8I GCNNGC 1 cut(s) 1147
CciI TCATGA 1 cut(s) 448
CfoI GCGC 2 cut(s) 209, 408
Cfr10I RCCGGY 3 cut(s) 293, 364, 820
Cfr13I GGNCC 2 cut(s) 990, 1039
CseI GACGC 5 cut(s) 432, 522, 1221, 1279, 1438
Csp6I GTAC 3 cut(s) 94, 606, 732
CspCI CAANNNNNGTGG 2 cut(s) 619, 654
CviQI GTAC 3 cut(s) 94, 606, 732
DdeI CTNAG 2 cut(s) 617, 915
DinI GGCGCC 1 cut(s) 208
DriI GACNNNNNGTC 1 cut(s) 428
EaeI YGGCCR 1 cut(s) 1405
Eam1104I CTCTTC 3 cut(s) 9, 518, 903
Eam1105I GACNNNNNGTC 1 cut(s) 428
EarI CTCTTC 3 cut(s) 9, 518, 903
EciI GGCGGA 3 cut(s) 212, 611, 1257
Eco130I CCWWGG 3 cut(s) 387, 537, 740
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 1180
Eco32I GATATC 1 cut(s) 1285
Eco47I GGWCC 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 915
EcoRII CCWGG 1 cut(s) 1022
EcoRV GATATC 1 cut(s) 1285
EcoT14I CCWWGG 3 cut(s) 387, 537, 740
EcoT22I ATGCAT 1 cut(s) 972
EcoT38I GRGCYC 1 cut(s) 171
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 3 cut(s) 387, 537, 740
FaqI GGGAC 3 cut(s) 281, 1290, 1352
FblI GTMKAC 1 cut(s) 1304
Fnu4HI GCNGC 5 cut(s) 195, 205, 238, 404, 548
FokI GGATG 5 cut(s) 212, 232, 383, 1310, 1451
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 5 cut(s) 195, 205, 238, 404, 548
FspBI CTAG 3 cut(s) 356, 794, 1209
GlaI GCGC 2 cut(s) 208, 407
GluI GCNGC 5 cut(s) 195, 205, 238, 404, 548
GsuI CTGGAG 1 cut(s) 983
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 3 cut(s) 1040, 1145, 1407
HapII CCGG 6 cut(s) 232, 294, 365, 400, 783, 821
HgaI GACGC 5 cut(s) 432, 522, 1221, 1279, 1438
HhaI GCGC 2 cut(s) 209, 408
Hin1I GRCGYC 5 cut(s) 207, 533, 1232, 1365, 1449
Hin6I GCGC 2 cut(s) 207, 406
HinP1I GCGC 2 cut(s) 207, 406
HinfI GANTC 7 cut(s) 19, 27, 621, 668, 1195, 1292, 1475
HpaII CCGG 6 cut(s) 232, 294, 365, 400, 783, 821
HphI GGTGA 5 cut(s) 131, 311, 433, 1102, 1408
Hpy166II GTNNAC 6 cut(s) 82, 144, 441, 1062, 1158, 1305
Hpy188I TCNGA 7 cut(s) 484, 715, 1291, 1297, 1386, 1445, 1480
Hpy188III TCNNGA 5 cut(s) 449, 523, 783, 794, 1177
Hpy8I GTNNAC 6 cut(s) 82, 144, 441, 1062, 1158, 1305
Hpy99I CGWCG 4 cut(s) 1019, 1049, 1223, 1237
HpyAV CCTTC 3 cut(s) 110, 208, 641
HpyCH4III ACNGT 7 cut(s) 342, 775, 1102, 1162, 1309, 1333, 1494
HpyCH4IV ACGT 4 cut(s) 411, 1154, 1365, 1380
HpyCH4V TGCA 8 cut(s) 163, 226, 336, 436, 563, 677, 761, 970
HpyF10VI GCNNNNNNNGC 3 cut(s) 699, 1046, 1455
HpyF3I CTNAG 2 cut(s) 617, 915
HpySE526I ACGT 4 cut(s) 411, 1154, 1365, 1380
Hsp92I GRCGYC 5 cut(s) 207, 533, 1232, 1365, 1449
HspAI GCGC 2 cut(s) 207, 406
KasI GGCGCC 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 782
LguI GCTCTTC 1 cut(s) 903
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 3 cut(s) 224, 390, 534
LweI GCATC 3 cut(s) 53, 957, 1009
MaeI CTAG 3 cut(s) 356, 794, 1209
MaeII ACGT 4 cut(s) 411, 1154, 1365, 1380
MaeIII GTNAC 6 cut(s) 36, 299, 889, 1102, 1126, 1361
MboII GAAGA 7 cut(s) 26, 125, 326, 505, 845, 920, 962
MfeI CAATTG 1 cut(s) 1453
MflI RGATCY 5 cut(s) 598, 779, 796, 1026, 1089
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 4 cut(s) 526, 1003, 1410, 1453
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 3 cut(s) 36, 1301, 1484
MmeI TCCRAC 3 cut(s) 507, 757, 1275
Mph1103I ATGCAT 1 cut(s) 972
MroI TCCGGA 1 cut(s) 782
MroXI GAANNNNTTC 2 cut(s) 18, 1194
MseI TTAA 3 cut(s) 696, 705, 750
MslI CAYNNNNRTG 3 cut(s) 714, 998, 1492
MspA1I CMGCKG 1 cut(s) 616
MspI CCGG 6 cut(s) 232, 294, 365, 400, 783, 821
MspR9I CCNGG 1 cut(s) 1024
MunI CAATTG 1 cut(s) 1453
Mva1269I GAATGC 3 cut(s) 470, 563, 709
MvaI CCWGG 1 cut(s) 1024
MvnI CGCG 1 cut(s) 1049
MwoI GCNNNNNNNGC 3 cut(s) 699, 1046, 1455
NarI GGCGCC 1 cut(s) 207
NlaIV GGNNCC 7 cut(s) 104, 168, 208, 600, 781, 787, 1041
NmuCI GTSAC 5 cut(s) 299, 889, 1102, 1126, 1361
NsiI ATGCAT 1 cut(s) 972
NspI RCATGY 2 cut(s) 100, 336
NspV TTCGAA 1 cut(s) 516
OliI CACNNNNGTG 1 cut(s) 1492
PagI TCATGA 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 903
PctI GAATGC 3 cut(s) 470, 563, 709
PdmI GAANNNNTTC 2 cut(s) 18, 1194
PfeI GAWTC 4 cut(s) 19, 621, 668, 1195
PkrI GCNGC 5 cut(s) 196, 206, 239, 405, 549
Ple19I CGATCG 1 cut(s) 1182
PleI GAGTC 3 cut(s) 35, 1300, 1483
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 3 cut(s) 35, 1300, 1483
Ppu21I YACGTR 1 cut(s) 1155
PsiI TTATAA 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 1022
PspGI CCWGG 1 cut(s) 1022
PspN4I GGNNCC 7 cut(s) 104, 168, 208, 600, 781, 787, 1041
PspPI GGNCC 2 cut(s) 990, 1039
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PsuI RGATCY 5 cut(s) 598, 779, 796, 1026, 1089
PvuI CGATCG 1 cut(s) 1182
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 3 cut(s) 95, 607, 733
RsaNI GTAC 3 cut(s) 94, 606, 732
RseI CAYNNNNRTG 3 cut(s) 714, 998, 1492
SapI GCTCTTC 1 cut(s) 903
SaqAI TTAA 3 cut(s) 696, 705, 750
SatI GCNGC 5 cut(s) 195, 205, 238, 404, 548
Sau96I GGNCC 2 cut(s) 990, 1039
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 3 cut(s) 36, 1301, 1484
ScrFI CCNGG 1 cut(s) 1024
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 3 cut(s) 53, 957, 1009
SfcI CTRYAG 1 cut(s) 1114
SfoI GGCGCC 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 516
SinI GGWCC 1 cut(s) 990
SmiMI CAYNNNNRTG 3 cut(s) 714, 998, 1492
SmlI CTYRAG 2 cut(s) 71, 256
SmoI CTYRAG 2 cut(s) 71, 256
Sse9I AATT 4 cut(s) 526, 1003, 1410, 1453
SsiI CCGC 8 cut(s) 100, 139, 194, 197, 204, 596, 1009, 1242
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 3 cut(s) 356, 794, 1209
StyD4I CCNGG 1 cut(s) 1022
StyI CCWWGG 3 cut(s) 387, 537, 740
TaaI ACNGT 7 cut(s) 342, 775, 1102, 1162, 1309, 1333, 1494
TaiI ACGT 4 cut(s) 414, 1157, 1368, 1383
TaqI TCGA 9 cut(s) 273, 345, 516, 666, 1014, 1178, 1182, 1221, 1461
TaqII GACCGA 1 cut(s) 1162
TasI AATT 4 cut(s) 526, 1003, 1410, 1453
TatI WGTACW 2 cut(s) 93, 605
TauI GCSGC 2 cut(s) 197, 207
TfiI GAWTC 4 cut(s) 19, 621, 668, 1195
Tru1I TTAA 3 cut(s) 696, 705, 750
Tru9I TTAA 3 cut(s) 696, 705, 750
TscAI CASTG 8 cut(s) 54, 287, 332, 345, 637, 1314, 1426, 1497
TseFI GTSAC 5 cut(s) 299, 889, 1102, 1126, 1361
TseI GCWGC 3 cut(s) 237, 403, 547
Tsp45I GTSAC 5 cut(s) 299, 889, 1102, 1126, 1361
TspDTI ATGAA 4 cut(s) 779, 913, 1016, 1192
TspGWI ACGGA 1 cut(s) 1207
TspRI CASTG 8 cut(s) 54, 287, 332, 345, 637, 1314, 1426, 1497
VpaK11BI GGWCC 1 cut(s) 990
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 2 cut(s) 100, 336
XcmI CCANNNNNNNNNTGG 3 cut(s) 184, 217, 416
XmiI GTMKAC 1 cut(s) 1304
XmnI GAANNNNTTC 2 cut(s) 18, 1194
XspI CTAG 3 cut(s) 356, 794, 1209
ZraI GACGTC 1 cut(s) 1366
ZrmI AGTACT 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.