Rw1G012380

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000217
Physical Location & Seq
Reverse (-)
27583252 .. 27583908
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012380.1

Sequence Viewer

Length: 657 bp
ATGGGAAACTTTCACATCTGCAAGAGATATACACTCGATTGCATGGTCGGTTTCACTGCAAATGTCACCAATATCCCCATATATGCCCACCTGAGAATTGAAGAGATTGTTAAGTCAAGAATTGTGTATGATTTCAGTTATCACCTCACGCAAGCTAGGATATACGATTATGAAAACGAGGTCGAAATTTCCATTGGAGAGGCCGTGAATTTGACCCAAGAAACCACTGGGATGACATTTAAGCTATCATACAAAAGGACCAAGAGCACATGTTGGAATGATGCCAAGACCATGTCTATCAAGTCTGGCGGCGTTAAAACAATCATGCAAGCTGGTGTTCCGGTAATTGGAGATGACGAAAAGCTTGTAATTAGTTCAAGTGAGTTTACGAGCGGATCAACAATATTTAAGTGGGGAGAAGTTGAGACATGGGAGACTCTAGTGCAGAGCGTGTGTAGAGTTGACGTGTCGGCAATGACCAAGTTGAATGTGAGTCTTGTGGCGAATAAAGCTTCATTTGAAGTTCCATTTAACTATTCTCGCCGCGATACTCGTACCAACGGTCAAATAAGCAACGACAACGACATGGATGATGGCATTTACATTGGGTTCAATTTCTATAACTTCAAGTACAACAGCAAGCAAAAAAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

218

Amino Acids

24.8

Weight (kDa)

6.32

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 393
AccII CGCG 1 cut(s) 546
AciI CCGC 3 cut(s) 309, 393, 544
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 2 cut(s) 186, 208
AfaI GTAC 2 cut(s) 556, 632
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 2 cut(s) 269, 465
AgsI TTSAA 6 cut(s) 101, 378, 487, 521, 613, 628
AjiI CACGTC 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 5 cut(s) 155, 244, 332, 364, 512
AluI AGCT 5 cut(s) 155, 244, 332, 364, 512
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 2 cut(s) 419, 428
AlwI GGATC 1 cut(s) 403
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 2 cut(s) 186, 208
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 58, 134
AvaII GGWCC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 269
BccI CCATC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 419, 428
BfaI CTAG 2 cut(s) 156, 440
BisI GCNGC 2 cut(s) 310, 544
BlsI GCNGC 2 cut(s) 311, 545
Bme18I GGWCC 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 480
BseGI GGATG 2 cut(s) 237, 595
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 419, 428
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 395
BspACI CCGC 3 cut(s) 309, 393, 544
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 1 cut(s) 546
BspPI GGATC 1 cut(s) 403
BsrBI CCGCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 232
BssMI GATC 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 563
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 3 cut(s) 153, 330, 641
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 237, 595
BstFNI CGCG 1 cut(s) 546
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 2 cut(s) 419, 428
BstMBI GATC 1 cut(s) 395
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 273
BstUI CGCG 1 cut(s) 546
BsuRI GGCC 1 cut(s) 203
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 2 cut(s) 237, 595
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 225
Cac8I GCNNGC 3 cut(s) 153, 330, 641
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 2 cut(s) 555, 631
CviAII CATG 6 cut(s) 43, 270, 292, 325, 429, 586
CviJI RGCY 6 cut(s) 155, 203, 244, 332, 364, 512
CviKI_1 RGCY 6 cut(s) 155, 203, 244, 332, 364, 512
CviQI GTAC 2 cut(s) 555, 631
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 258
FaeI CATG 6 cut(s) 46, 273, 295, 328, 432, 589
FatI CATG 6 cut(s) 42, 269, 291, 324, 428, 585
Fnu4HI GCNGC 2 cut(s) 310, 544
FokI GGATG 2 cut(s) 244, 602
Fsp4HI GCNGC 2 cut(s) 310, 544
FspBI CTAG 2 cut(s) 156, 440
GluI GCNGC 2 cut(s) 310, 544
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 341
Hin1II CATG 6 cut(s) 46, 273, 295, 328, 432, 589
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 2 cut(s) 362, 510
HinfI GANTC 2 cut(s) 436, 493
HpaII CCGG 1 cut(s) 341
HphI GGTGA 2 cut(s) 58, 134
Hpy166II GTNNAC 2 cut(s) 387, 463
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 2 cut(s) 387, 463
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 5 cut(s) 21, 42, 59, 328, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 6 cut(s) 46, 273, 295, 328, 432, 589
Kzo9I GATC 1 cut(s) 395
LpnPI CCDG 5 cut(s) 104, 213, 291, 318, 354
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 156, 440
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 397
MbiI CCGCTC 1 cut(s) 393
MboI GATC 1 cut(s) 395
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 7 cut(s) 96, 120, 186, 208, 345, 369, 613
MlyI GAGTC 2 cut(s) 430, 502
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 3 cut(s) 155, 172, 193
MseI TTAA 5 cut(s) 111, 240, 315, 408, 531
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 509
NdeII GATC 1 cut(s) 395
NlaIII CATG 6 cut(s) 46, 273, 295, 328, 432, 589
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 273
PciI ACATGT 1 cut(s) 269
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 311, 545
PleI GAGTC 2 cut(s) 430, 501
PpsI GAGTC 2 cut(s) 430, 501
PscI ACATGT 1 cut(s) 269
PspPI GGNCC 1 cut(s) 258
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 2 cut(s) 556, 632
RsaNI GTAC 2 cut(s) 555, 631
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 5 cut(s) 111, 240, 315, 408, 531
SatI GCNGC 2 cut(s) 310, 544
Sau3AI GATC 1 cut(s) 395
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 2 cut(s) 430, 502
SduI GDGCHC 1 cut(s) 269
SetI ASST 9 cut(s) 93, 147, 157, 183, 246, 334, 366, 468, 514
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 7 cut(s) 96, 120, 186, 208, 345, 369, 613
SsiI CCGC 3 cut(s) 309, 393, 544
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 156, 440
TaaI ACNGT 1 cut(s) 563
TaiI ACGT 1 cut(s) 468
TaqI TCGA 2 cut(s) 36, 183
TasI AATT 7 cut(s) 96, 120, 186, 208, 345, 369, 613
TatI WGTACW 1 cut(s) 630
TauI GCSGC 2 cut(s) 312, 546
Tru1I TTAA 5 cut(s) 111, 240, 315, 408, 531
Tru9I TTAA 5 cut(s) 111, 240, 315, 408, 531
TscAI CASTG 2 cut(s) 61, 232
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 186, 504
TspRI CASTG 2 cut(s) 61, 232
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 2 cut(s) 186, 208
XceI RCATGY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XspI CTAG 2 cut(s) 156, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.