Rh1BG120600

Agglutinin domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
20502724 .. 20505114
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG120600.1

Sequence Viewer

Length: 2052 bp
ATGACGGAGGGCGAGATTAATAGAGCAGAGAATCCGAGTGATGAAACCACATTACCAAGATTTGTGGTTCTGAAATCAAACAACAACAACAAATACTTGAGCTACACAAAGATTAATGAGGAAAATGTTGATCAGGTTCCTATGGGGCTTCTCAAATTCTCTGGAGAAGAAGTCGGGAGCCATTATGCAAAGTTCGAAGTGGAGATGGCAAAGAGTAGTGAGAACCAGGGACTAGTCCACATAAGATGCTACCACAACAACAAATACTGGGTAAGGCTTCTTGAAACAAATACGTCAAACCATGATCATTGGATCGTTGCGCAAGCTGAGGAGCCAGAGGAAGACCGGTCCAAGAGCTCGTGTACCTTGTTTGAGCCTATTGTCACCATAGAAGAATTAAATGATCCAATTGTTGATGAAGAGAACGATGATGATGCCATCAACGATGGTGAGACTGATGATACCGAACAACATCAAAATCAGGAAGTCATCGATACTCATCCAGATCCTGATGTCATCGAGCAACTTCAAGATCACGATGCCACTGATGATCCTCATAACAATGGCAACCCGAGATTAGATGAAGGTTTTCAAGATCAGCATCATGGTAGAGATGAATCAAACATCCCTGAGGAACACCAAGCAAATGAATTAGTGAATCACGATGATGATGAGGAGATCAACAACGACGACGAAGAAGATGATGATAATAATAATAATCGTCGTGCTCGTGCTCGTGCTCATCCTCATCCTCCACGAAACGAAATGGATAGGAAGAGAGTATTAGTCCGTCTTCGCCATGTCCAACTCGGACACTACGTAGGCTTGCGGAGGGACAATGTCGACGCACAACACTTCATGGGAGGCTTATCCACTTCACATGACAATGATACCAACAGCAGTATGGATGAGAATAATATTAGTACTAATGAACAAACTAACCGTACAGGTGAGAATAGTTACAGTGCGGATGATCAGACTAACCGTACAGGCAAGAATAATAACAATACAAATGATCAAACTAACTGTACAAATGATATAGCACCGTGTGATGTGTTCACTGTCATTAATTGGGAATCATTGGTGATATTTCCCACACATGTGGCATTCAAGGGAGATAATGGAGTCTTCCTCAGCACTGATAATCGCAGCTGGTATGAAGGTCAAATGTGTTTGGAGTACCGAGCCGATGACTTTAGAGATGGAATGGCAGCGCATGAGATTTTTACTAATCCAGACGGAAGCATCCGCATAAAATCCAATTATTTGGGCAAGTTTTGGTGTCGTAGGCCGGGTGACCCTAACTGGGTCGTTCCTGACTCGGATGACCCGACTCGCAACGACACGTTGTTTCAGCCGATTAAAATTGACGAAAACGAATTTGCTCTCCGCAATATGGGAAACTTTCACATCTGCAAGAGATATACACTCGGTTGCATGGTCGGTTTCACTACAAATGTCACCAATATCCCCATATATGCCCACCTGAGAATTGAAGAGATTGTTAAGTCAAGAATTGTGTATGATGTCAGTTATCACCTCACGCAAGCTAGGATCTACGATTATGAAAACGAGGTCGAAATTGCCATTGGAGAGGCCGTGAATTTGACCCAAGAAACCACTGGGATGACATTTAAGCTATCATACAAAAGGACCAAGAGCACGTGTTGGAATGATGCCAAAACCATGTCTATCAAGTCTGGCGGCGTTAAAACAACCATGCAAGCTGGTGTTCCGGTAATTGGAGACGACGAAAAGCTTGTAATTAGTTCAAATGAGTTTACGAGTGGATCAACAATATTTAAGTGGGGAGAAGTTGAGACATGGGAAACTCCGGTGCAGAGCGTGTGCAGAGTTGACGTGCCGGCAATGACTAAGTTGAATGTGAGTCTTGTGGCGAATAAAGCTTCATATGAAGTTCCATTTAACTATTCTCGCCGCGACACTCGTACCAATGGTCAAATAAGCAACGACAACGACATGGATGATGGCATTTACATTGGGTTCAATTTCTATAACTTCAAGTACAACATCAAGCAAAAAAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

683

Amino Acids

78.23

Weight (kDa)

4.7

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 17 - 132 3e-20 Agglutinin domain
Agglutinin PF07468 366 - 479 4.5e-14 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 321
AccI GTMKAC 1 cut(s) 843
AccII CGCG 1 cut(s) 1941
AciI CCGC 6 cut(s) 829, 968, 1249, 1390, 1704, 1939
AclWI GGATC 6 cut(s) 320, 398, 500, 545, 1562, 1798
AcsI RAATTY 3 cut(s) 155, 1379, 1603
AcvI CACGTG 1 cut(s) 1665
AdeI CACNNNGTG 1 cut(s) 1049
AfaI GTAC 8 cut(s) 364, 925, 946, 988, 1030, 1181, 1951, 2027
AfiI CCNNNNNNNGG 3 cut(s) 1306, 1396, 1742
AflIII ACRYGT 3 cut(s) 1099, 1344, 1664
AgeI ACCGGT 1 cut(s) 345
AgsI TTSAA 9 cut(s) 284, 530, 593, 1111, 1496, 1773, 1882, 2008, 2023
AhlI ACTAGT 1 cut(s) 232
AjiI CACGTC 1 cut(s) 1861
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 1572, 1604
AleI CACNNNNGTG 1 cut(s) 1100
AluBI AGCT 9 cut(s) 102, 326, 357, 1152, 1550, 1639, 1727, 1759, 1907
AluI AGCT 9 cut(s) 102, 326, 357, 1152, 1550, 1639, 1727, 1759, 1907
Alw21I GWGCWC 5 cut(s) 359, 730, 736, 742, 1664
Alw26I GTCTC 3 cut(s) 446, 1740, 1814
AlwI GGATC 6 cut(s) 320, 398, 500, 545, 1562, 1798
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 2 cut(s) 1289, 1596
ApeKI GCWGC 2 cut(s) 1149, 1211
ApoI RAATTY 3 cut(s) 155, 1379, 1603
AseI ATTAAT 3 cut(s) 18, 114, 1068
AsiGI ACCGGT 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 322, 1216
AspS9I GGNCC 2 cut(s) 348, 1653
AsuC2I CCSGG 1 cut(s) 1293
AsuHPI GGTGA 7 cut(s) 376, 461, 962, 1096, 1307, 1453, 1529
AsuII TTCGAA 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 2 cut(s) 348, 1653
AxyI CCTNAGG 1 cut(s) 630
BaeI ACNNNNGTAYC 2 cut(s) 1933, 1966
BanII GRGCYC 1 cut(s) 359
BauI CACGAG 3 cut(s) 358, 729, 735
BbrPI CACGTG 1 cut(s) 1665
BbsI GAAGAC 3 cut(s) 348, 785, 1120
Bbv12I GWGCWC 5 cut(s) 359, 730, 736, 742, 1664
BbvCI CCTCAGC 2 cut(s) 327, 1133
BbvI GCAGC 2 cut(s) 1161, 1223
BccI CCATC 5 cut(s) 199, 440, 446, 1196, 1982
BceAI ACGGC 1 cut(s) 1583
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 227
BclI TGATCA 4 cut(s) 130, 304, 973, 1015
BcnI CCSGG 1 cut(s) 1293
BcoDI GTCTC 3 cut(s) 446, 1740, 1814
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 2 cut(s) 233, 1551
BisI GCNGC 4 cut(s) 1150, 1212, 1705, 1939
BlsI GCNGC 4 cut(s) 1151, 1213, 1706, 1940
BmcAI AGTACT 1 cut(s) 925
Bme1390I CCNGG 2 cut(s) 227, 1293
Bme18I GGWCC 2 cut(s) 348, 1653
BmeT110I CYCGRG 1 cut(s) 571
BmgBI CACGTC 1 cut(s) 1861
BmgT120I GGNCC 2 cut(s) 348, 1653
BmiI GGNNCC 3 cut(s) 138, 179, 333
BmrFI CCNGG 2 cut(s) 227, 1293
BmrI ACTGGG 3 cut(s) 277, 1315, 1632
BmsI GCATC 6 cut(s) 236, 424, 529, 610, 1254, 1666
BmuI ACTGGG 3 cut(s) 277, 1315, 1632
BpiI GAAGAC 3 cut(s) 348, 785, 1120
BplI GAGNNNNNCTC 2 cut(s) 1116, 1148
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 2 cut(s) 327, 1133
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 1293
Bsa29I ATCGAT 1 cut(s) 492
BsaAI YACGTR 2 cut(s) 820, 1665
BsaBI GATNNNNATC 2 cut(s) 498, 600
BsaJI CCNNGG 1 cut(s) 226
BsaWI WCCGGW 3 cut(s) 345, 1735, 1834
BsaXI ACNNNNNCTCC 4 cut(s) 156, 186, 1584, 1614
Bsc4I CCNNNNNNNGG 3 cut(s) 1306, 1396, 1742
Bse118I RCCGGY 2 cut(s) 345, 1864
Bse1I ACTGG 3 cut(s) 272, 1310, 1627
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 1 cut(s) 1875
Bse8I GATNNNNATC 2 cut(s) 498, 600
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 226
BseJI GATNNNNATC 2 cut(s) 498, 600
BseLI CCNNNNNNNGG 3 cut(s) 1306, 1396, 1742
BseMI GCAATG 1 cut(s) 1875
BseMII CTCAG 4 cut(s) 318, 621, 1147, 1478
BseNI ACTGG 3 cut(s) 272, 1310, 1627
BseRI GAGGAG 2 cut(s) 344, 689
BseXI GCAGC 2 cut(s) 1161, 1223
BsgI GTGCAG 2 cut(s) 1859, 1870
Bsh1236I CGCG 1 cut(s) 1941
BshFI GGCC 2 cut(s) 1291, 1598
BshTI ACCGGT 1 cut(s) 345
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 5 cut(s) 359, 730, 736, 742, 1664
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 5 cut(s) 346, 1292, 1736, 1835, 1865
BslFI GGGAC 2 cut(s) 243, 848
BslI CCNNNNNNNGG 3 cut(s) 1306, 1396, 1742
BsmAI GTCTC 3 cut(s) 446, 1740, 1814
BsmBI CGTCTC 1 cut(s) 1740
BsmFI GGGAC 2 cut(s) 243, 848
BsmI GAATGC 1 cut(s) 1106
BsnI GGCC 2 cut(s) 1291, 1598
BsoBI CYCGRG 1 cut(s) 571
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 5 cut(s) 359, 730, 736, 742, 1664
Bsp1407I TGTACA 1 cut(s) 1028
BspACI CCGC 6 cut(s) 829, 968, 1249, 1390, 1704, 1939
BspANI GGCC 2 cut(s) 1291, 1598
BspCNI CTCAG 4 cut(s) 319, 622, 1146, 1479
BspDI ATCGAT 1 cut(s) 492
BspFNI CGCG 1 cut(s) 1941
BspLI GGNNCC 3 cut(s) 138, 179, 333
BspPI GGATC 6 cut(s) 320, 398, 500, 545, 1562, 1798
BspT104I TTCGAA 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 1875
BsrFI RCCGGY 2 cut(s) 345, 1864
BsrGI TGTACA 1 cut(s) 1028
BsrI ACTGG 3 cut(s) 272, 1310, 1627
BssAI RCCGGY 2 cut(s) 345, 1864
BssECI CCNNGG 1 cut(s) 226
BssSI CACGAG 3 cut(s) 358, 729, 735
Bst2BI CACGAG 3 cut(s) 358, 729, 735
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 6 cut(s) 944, 965, 986, 1028, 1047, 1063
Bst6I CTCTTC 3 cut(s) 414, 770, 1491
BstAUI TGTACA 1 cut(s) 1028
BstBAI YACGTR 2 cut(s) 820, 1665
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 5 cut(s) 324, 827, 1548, 1725, 1866
BstDEI CTNAG 5 cut(s) 327, 630, 1133, 1487, 1875
BstEII GGTNACC 1 cut(s) 1295
BstFNI CGCG 1 cut(s) 1941
BstHHI GCGC 2 cut(s) 322, 1216
BstMAI GTCTC 3 cut(s) 446, 1740, 1814
BstMWI GCNNNNNNNGC 1 cut(s) 1904
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 1103
BstPI GGTNACC 1 cut(s) 1295
BstSCI CCNGG 2 cut(s) 225, 1291
BstSNI TACGTA 1 cut(s) 820
BstUI CGCG 1 cut(s) 1941
BstV1I GCAGC 2 cut(s) 1161, 1223
BstV2I GAAGAC 3 cut(s) 348, 785, 1120
BstX2I RGATCY 2 cut(s) 505, 1554
BstXI CCANNNNNNTGG 2 cut(s) 1102, 1267
BstYI RGATCY 2 cut(s) 505, 1554
Bsu15I ATCGAT 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 630
BsuRI GGCC 2 cut(s) 1291, 1598
BsuTUI ATCGAT 1 cut(s) 492
BtrI CACGTC 1 cut(s) 1861
BtsIMutI CAGTG 5 cut(s) 543, 970, 1059, 1137, 1620
Cac8I GCNNGC 5 cut(s) 324, 827, 1548, 1725, 1866
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 2 cut(s) 322, 1216
Cfr10I RCCGGY 2 cut(s) 345, 1864
Cfr13I GGNCC 2 cut(s) 348, 1653
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 854
Csp6I GTAC 8 cut(s) 363, 924, 945, 987, 1029, 1180, 1950, 2026
CspAI ACCGGT 1 cut(s) 345
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviQI GTAC 8 cut(s) 363, 924, 945, 987, 1029, 1180, 1950, 2026
DdeI CTNAG 5 cut(s) 327, 630, 1133, 1487, 1875
DraIII CACNNNGTG 1 cut(s) 1049
Eam1104I CTCTTC 3 cut(s) 414, 770, 1491
EarI CTCTTC 3 cut(s) 414, 770, 1491
Ecl136II GAGCTC 1 cut(s) 357
Eco105I TACGTA 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 348, 1653
Eco53kI GAGCTC 1 cut(s) 357
Eco72I CACGTG 1 cut(s) 1665
Eco81I CCTNAGG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 571
Eco91I GGTNACC 1 cut(s) 1295
EcoICRI GAGCTC 1 cut(s) 357
EcoO65I GGTNACC 1 cut(s) 1295
EcoRII CCWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 1740
FaqI GGGAC 2 cut(s) 243, 848
FauNDI CATATG 1 cut(s) 1912
FbaI TGATCA 4 cut(s) 130, 304, 973, 1015
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 4 cut(s) 1150, 1212, 1705, 1939
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 4 cut(s) 1150, 1212, 1705, 1939
FspBI CTAG 2 cut(s) 233, 1551
FspI TGCGCA 1 cut(s) 321
GlaI GCGC 2 cut(s) 321, 1215
GluI GCNGC 4 cut(s) 1150, 1212, 1705, 1939
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 1291, 1598
HapII CCGG 5 cut(s) 346, 1292, 1736, 1835, 1865
HgaI GACGC 1 cut(s) 854
HhaI GCGC 2 cut(s) 322, 1216
Hin6I GCGC 2 cut(s) 320, 1214
HinP1I GCGC 2 cut(s) 320, 1214
HincII GTYRAC 2 cut(s) 844, 1858
HindII GTYRAC 2 cut(s) 844, 1858
HindIII AAGCTT 2 cut(s) 1757, 1905
HinfI GANTC 8 cut(s) 31, 617, 658, 1076, 1125, 1319, 1333, 1888
HpaII CCGG 5 cut(s) 346, 1292, 1736, 1835, 1865
HphI GGTGA 7 cut(s) 376, 461, 962, 1096, 1307, 1453, 1529
Hpy166II GTNNAC 6 cut(s) 238, 363, 844, 1059, 1782, 1858
Hpy188I TCNGA 5 cut(s) 36, 72, 812, 978, 1324
Hpy8I GTNNAC 6 cut(s) 238, 363, 844, 1059, 1782, 1858
Hpy99I CGWCG 5 cut(s) 692, 695, 726, 848, 1754
HpyAV CCTTC 2 cut(s) 578, 1154
HpyCH4III ACNGT 6 cut(s) 944, 965, 986, 1028, 1047, 1063
HpyCH4IV ACGT 5 cut(s) 293, 819, 1346, 1664, 1860
HpyCH4V TGCA 6 cut(s) 188, 1416, 1437, 1723, 1840, 1851
HpyF10VI GCNNNNNNNGC 1 cut(s) 1904
HpyF3I CTNAG 5 cut(s) 327, 630, 1133, 1487, 1875
HpySE526I ACGT 5 cut(s) 293, 819, 1346, 1664, 1860
HspAI GCGC 2 cut(s) 320, 1214
KroI GCCGGC 1 cut(s) 1864
KroNI GCCGGC 1 cut(s) 1866
Ksp22I TGATCA 4 cut(s) 130, 304, 973, 1015
LmnI GCTCC 2 cut(s) 177, 331
Lsp1109I GCAGC 2 cut(s) 1161, 1223
LweI GCATC 6 cut(s) 236, 424, 529, 610, 1254, 1666
MaeI CTAG 2 cut(s) 233, 1551
MaeII ACGT 5 cut(s) 293, 819, 1346, 1664, 1860
MaeIII GTNAC 4 cut(s) 382, 959, 1295, 1459
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 2 cut(s) 505, 1554
MhlI GDGCHC 5 cut(s) 359, 730, 736, 742, 1664
MlyI GAGTC 4 cut(s) 1134, 1313, 1327, 1897
MmeI TCCRAC 2 cut(s) 829, 1649
MroNI GCCGGC 1 cut(s) 1864
MroXI GAANNNNTTC 1 cut(s) 588
MslI CAYNNNNRTG 5 cut(s) 561, 666, 885, 1100, 1625
MspA1I CMGCKG 1 cut(s) 1152
MspI CCGG 5 cut(s) 346, 1292, 1736, 1835, 1865
MspR9I CCNGG 2 cut(s) 227, 1293
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 1106
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 1941
MwoI GCNNNNNNNGC 1 cut(s) 1904
NaeI GCCGGC 1 cut(s) 1866
NciI CCSGG 1 cut(s) 1293
NdeI CATATG 1 cut(s) 1912
NgoMIV GCCGGC 1 cut(s) 1864
NlaIV GGNNCC 3 cut(s) 138, 179, 333
NmuCI GTSAC 3 cut(s) 382, 1295, 1459
NsbI TGCGCA 1 cut(s) 321
NspI RCATGY 1 cut(s) 1103
NspV TTCGAA 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 1100
PciI ACATGT 1 cut(s) 1099
PcsI WCGNNNNNNNCGW 3 cut(s) 727, 816, 1328
PctI GAATGC 1 cut(s) 1106
PdiI GCCGGC 1 cut(s) 1866
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 4 cut(s) 31, 617, 658, 1076
PflFI GACNNNGTC 1 cut(s) 839
PinAI ACCGGT 1 cut(s) 345
PkrI GCNGC 4 cut(s) 1151, 1213, 1706, 1940
PleI GAGTC 4 cut(s) 1133, 1313, 1327, 1896
PmaCI CACGTG 1 cut(s) 1665
PmlI CACGTG 1 cut(s) 1665
PpsI GAGTC 4 cut(s) 1133, 1313, 1327, 1896
Ppu21I YACGTR 2 cut(s) 820, 1665
PscI ACATGT 1 cut(s) 1099
PshBI ATTAAT 3 cut(s) 18, 114, 1068
Psp124BI GAGCTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 225
PspCI CACGTG 1 cut(s) 1665
PspEI GGTNACC 1 cut(s) 1295
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 3 cut(s) 138, 179, 333
PspPI GGNCC 2 cut(s) 348, 1653
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 2 cut(s) 505, 1554
PsyI GACNNNGTC 1 cut(s) 839
PvuII CAGCTG 1 cut(s) 1152
RsaI GTAC 8 cut(s) 364, 925, 946, 988, 1030, 1181, 1951, 2027
RsaNI GTAC 8 cut(s) 363, 924, 945, 987, 1029, 1180, 1950, 2026
RseI CAYNNNNRTG 5 cut(s) 561, 666, 885, 1100, 1625
SacI GAGCTC 1 cut(s) 359
SalI GTCGAC 1 cut(s) 842
SatI GCNGC 4 cut(s) 1150, 1212, 1705, 1939
Sau96I GGNCC 2 cut(s) 348, 1653
ScaI AGTACT 1 cut(s) 925
SchI GAGTC 4 cut(s) 1134, 1313, 1327, 1897
ScrFI CCNGG 2 cut(s) 227, 1293
SduI GDGCHC 5 cut(s) 359, 730, 736, 742, 1664
SfaNI GCATC 6 cut(s) 236, 424, 529, 610, 1254, 1666
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 2 cut(s) 348, 1653
SmiMI CAYNNNNRTG 5 cut(s) 561, 666, 885, 1100, 1625
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SnaBI TACGTA 1 cut(s) 820
SpeI ACTAGT 1 cut(s) 232
SsiI CCGC 6 cut(s) 829, 968, 1249, 1390, 1704, 1939
SspI AATATT 2 cut(s) 919, 1800
SspMI CTAG 2 cut(s) 233, 1551
SstI GAGCTC 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 225, 1291
TaaI ACNGT 6 cut(s) 944, 965, 986, 1028, 1047, 1063
TaiI ACGT 5 cut(s) 296, 822, 1349, 1667, 1863
TaqI TCGA 5 cut(s) 195, 492, 519, 843, 1578
TatI WGTACW 3 cut(s) 923, 1028, 2025
TauI GCSGC 2 cut(s) 1707, 1941
TfiI GAWTC 4 cut(s) 31, 617, 658, 1076
TscAI CASTG 5 cut(s) 550, 970, 1066, 1144, 1627
TseFI GTSAC 3 cut(s) 382, 1295, 1459
TseI GCWGC 2 cut(s) 1149, 1211
Tsp45I GTSAC 3 cut(s) 382, 1295, 1459
TspGWI ACGGA 3 cut(s) 20, 779, 1254
TspRI CASTG 5 cut(s) 550, 970, 1066, 1144, 1627
Tth111I GACNNNGTC 1 cut(s) 839
VpaK11BI GGWCC 2 cut(s) 348, 1653
VspI ATTAAT 3 cut(s) 18, 114, 1068
XapI RAATTY 3 cut(s) 155, 1379, 1603
XceI RCATGY 1 cut(s) 1103
XcmI CCANNNNNNNNNTGG 2 cut(s) 901, 1619
XmiI GTMKAC 1 cut(s) 843
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 2 cut(s) 233, 1551
ZrmI AGTACT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.