Rh2CG553400

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000217
Physical Location & Seq
Forward (+)
73247929 .. 73249937
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG553400.1

Sequence Viewer

Length: 1593 bp
ATGTCGTTCCTATTGCCACCCACTATTGCTCTGAAATCGTCACAGTTCAACTATTACTTGAACTACAGCAATGATTCTGATTCCGAGAACCATGGCTTTCTCAAATTCAATGGAGCGAATGTCTTCAGCTCGTTAGCAAAGTTCCAAGTGGTGACGGCCAATATTGGGACGGGACTCGTACATATAAGATGCTGTCACAACAAAAAGTTCCTGCGAATGAGAACTGAAGGCGATGTCCACCTTTCTCCGGAGGCTGACGAACCAGAGGAGGACCAATCCAAATGGTCGTGTACACTATTTGAGCCTCGACTAGCTGCTGATGGCAACCCCGACAAGGCCCGGTTGTTCCATGTCCAATCAAAAAAATATGCAACAGCATGGGACGAAGGTGGAAAAAAGTTCTCAAGACTACATGCCGATCAGATTGATCAGGGTACCTTTGAGATCATTGACTTGGAGTCACTGGTGATATTGCCAAAGCATGTGGCCTTCAAAGCCGGCAACAACCTTTACCTTCGGCATGCGGACAGTAATCAGCTCAGGTTCATGTCCACCGATAAGGGGGTTCCTGAGTCGTGGTTCGAAGTGTCCACCGATGGCGATGGAAGGGTGAAAATCAAGGTGTTCAACAGCTTGAGCAACAACTACCTGAGGTTCAGCGATGCAACCTACGGCAACTGCGTTTTTGCTGATGGAAACTCCAACAGCTGCCCACCTCCAACCTTGTTTTGGCCAGTCAAGGTCGACAATAGTACGGTTGCTCTCAAATGCTTGAGCAACGACAAATTTTGCACTCGACACACCGGTTATATACAAGACGGTCTGAACGTGAATGAGACTAGTACCACCATTTCAAACTTGTCACGCTTCAGGCTGGAAGAGCTTGTTCTCTCTAGGAGAATATACAATACCGACTTCGACCTTAAGAATGCCATAATCTACGGCGAGACCCCGGTCACCATGGCCACTGCAAATGCCACCAACAACACCTCAGTAGCCAACACTGTGGAATTCAAGTTTGCTTACATGGAAAGTAAGAGCTGTATGTGGAGTGCCAGCCACTCGTGGATGGTGGGCGTGAGTGCCACCGTTGACTTCAAAGTTCCGTTCATCGGCGGTACTGAGGTCACTGTTTCCGCAGAATATTCCGGATCATACGAGTGGGGAGAGACAATTACATCCGAAAACACATTGGAGACCACCTACACGGTTACAGTGCCGGCACACACTTCTATATCTGTGAGCCTGATGGCAACCAAGGGAAAATGCGACGTGCCTTACTCGTATTATCAACGGGACGTGCTTTATAACGGTAAAACTGTTGTCTATAAGAAAGATGATGGGCTGTACACGGGTGTTAATTCATACAACTTCCGTTACGTGGTTACTACACAGAAAGAGCCGGATTCTACAGCTGCTGATTCATCGCCTTCTGAGCAGTGGTTGCCGGATCCATCAATCTTCCCATCAAAACAACAAAAGATACCTCTACCTGTGCCATTTGGATCAACCACAATGCAAAGCCCGGTGACCTCAACCACCGCCCCGAAAAAAGAGTTGTCAATGAAGATACAGCAGCTCGATCTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

530

Amino Acids

59.14

Weight (kDa)

5.93

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 5 - 151 4e-19 Agglutinin domain
Aerolysin PF01117 306 - 429 1.1e-09 Aerolysin toxin
ETX_MTX2 PF03318 317 - 429 2.8e-08 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1308
Acc65I GGTACC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 434
AccI GTMKAC 1 cut(s) 744
AccIII TCCGGA 2 cut(s) 247, 1148
AciI CCGC 4 cut(s) 524, 1116, 1137, 1542
AclWI GGATC 4 cut(s) 1159, 1445, 1458, 1513
AcoI YGGCCR 3 cut(s) 156, 731, 963
AcsI RAATTY 3 cut(s) 104, 785, 1010
AcuI CTGAAG 3 cut(s) 109, 246, 853
AfaI GTAC 7 cut(s) 180, 292, 436, 754, 844, 1120, 1349
AfiI CCNNNNNNNGG 7 cut(s) 165, 247, 334, 561, 729, 1112, 1381
AflII CTTAAG 1 cut(s) 923
AgeI ACCGGT 1 cut(s) 803
AgsI TTSAA 8 cut(s) 49, 61, 109, 493, 628, 855, 1015, 1099
AhdI GACNNNNNGTC 1 cut(s) 457
AhlI ACTAGT 1 cut(s) 839
AjiI CACGTC 2 cut(s) 1273, 1300
AluBI AGCT 9 cut(s) 129, 314, 538, 633, 708, 883, 1041, 1415, 1579
AluI AGCT 9 cut(s) 129, 314, 538, 633, 708, 883, 1041, 1415, 1579
Alw26I GTCTC 4 cut(s) 830, 941, 1163, 1190
AlwI GGATC 4 cut(s) 1159, 1445, 1458, 1513
AlwNI CAGNNNCTG 1 cut(s) 1418
Aor13HI TCCGGA 2 cut(s) 247, 1148
AoxI GGCC 5 cut(s) 156, 336, 486, 731, 963
ApeKI GCWGC 4 cut(s) 314, 708, 1415, 1576
ApoI RAATTY 3 cut(s) 104, 785, 1010
AsiGI ACCGGT 1 cut(s) 803
Asp700I GAANNNNTTC 1 cut(s) 122
Asp718I GGTACC 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 271, 337
AsuC2I CCSGG 3 cut(s) 340, 953, 1526
AsuHPI GGTGA 5 cut(s) 163, 478, 622, 949, 1540
AsuII TTCGAA 1 cut(s) 582
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 650
BaeI ACNNNNGTAYC 2 cut(s) 1110, 1143
BalI TGGCCA 2 cut(s) 733, 965
BamHI GGATCC 1 cut(s) 1450
BanI GGYRCC 1 cut(s) 434
BauI CACGAG 1 cut(s) 1063
BbsI GAAGAC 1 cut(s) 115
BbvI GCAGC 4 cut(s) 301, 695, 1402, 1588
BccI CCATC 9 cut(s) 314, 590, 596, 686, 1063, 1243, 1334, 1462, 1474
BceAI ACGGC 3 cut(s) 171, 688, 958
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 3 cut(s) 340, 953, 1526
BcoDI GTCTC 4 cut(s) 830, 941, 1163, 1190
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 3 cut(s) 311, 840, 894
BfmI CTRYAG 2 cut(s) 64, 1410
BfrI CTTAAG 1 cut(s) 923
BisI GCNGC 4 cut(s) 315, 709, 1416, 1577
BlsI GCNGC 4 cut(s) 316, 710, 1417, 1578
Bme1390I CCNGG 3 cut(s) 340, 953, 1526
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 457
BmgBI CACGTC 2 cut(s) 1273, 1300
BmgT120I GGNCC 2 cut(s) 271, 337
BmiI GGNNCC 3 cut(s) 436, 567, 1452
BmrFI CCNGG 3 cut(s) 340, 953, 1526
BmsI GCATC 2 cut(s) 179, 652
BoxI GACNNNNGTC 1 cut(s) 953
BpiI GAAGAC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 539
Bpu14I TTCGAA 1 cut(s) 582
BpuEI CTTGAG 3 cut(s) 388, 655, 793
BpuMI CCSGG 3 cut(s) 340, 953, 1526
BsaAI YACGTR 1 cut(s) 1381
BsaI GGTCTC 2 cut(s) 941, 1190
BsaJI CCNNGG 4 cut(s) 91, 951, 960, 1257
BsaWI WCCGGW 3 cut(s) 247, 803, 1148
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 7 cut(s) 165, 247, 334, 561, 729, 1112, 1381
Bse118I RCCGGY 3 cut(s) 497, 803, 1219
Bse1I ACTGG 2 cut(s) 468, 734
Bse21I CCTNAGG 1 cut(s) 650
Bse3DI GCAATG 1 cut(s) 76
BseAI TCCGGA 2 cut(s) 247, 1148
BseDI CCNNGG 4 cut(s) 91, 951, 960, 1257
BseGI GGATG 2 cut(s) 1074, 1178
BseLI CCNNNNNNNGG 7 cut(s) 165, 247, 334, 561, 729, 1112, 1381
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 6 cut(s) 553, 561, 641, 1005, 1113, 1425
BseNI ACTGG 2 cut(s) 468, 734
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 4 cut(s) 301, 695, 1402, 1588
BshFI GGCC 5 cut(s) 158, 338, 488, 733, 965
BshNI GGYRCC 1 cut(s) 434
BshTI ACCGGT 1 cut(s) 803
BslFI GGGAC 4 cut(s) 181, 186, 395, 1310
BslI CCNNNNNNNGG 7 cut(s) 165, 247, 334, 561, 729, 1112, 1381
BsmAI GTCTC 4 cut(s) 830, 941, 1163, 1190
BsmFI GGGAC 4 cut(s) 181, 186, 395, 1310
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 5 cut(s) 158, 338, 488, 733, 965
Bso31I GGTCTC 2 cut(s) 941, 1190
Bsp119I TTCGAA 1 cut(s) 582
Bsp13I TCCGGA 2 cut(s) 247, 1148
Bsp1407I TGTACA 2 cut(s) 290, 1347
Bsp143I GATC 7 cut(s) 418, 427, 444, 1151, 1450, 1505, 1582
Bsp19I CCATGG 2 cut(s) 91, 960
BspACI CCGC 4 cut(s) 524, 1116, 1137, 1542
BspANI GGCC 5 cut(s) 158, 338, 488, 733, 965
BspCNI CTCAG 6 cut(s) 552, 562, 642, 1004, 1114, 1426
BspEI TCCGGA 2 cut(s) 247, 1148
BspLI GGNNCC 3 cut(s) 436, 567, 1452
BspPI GGATC 4 cut(s) 1159, 1445, 1458, 1513
BspQI GCTCTTC 1 cut(s) 873
BspT104I TTCGAA 1 cut(s) 582
BspT107I GGYRCC 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 923
BspTNI GGTCTC 2 cut(s) 941, 1190
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 3 cut(s) 497, 803, 1219
BsrGI TGTACA 2 cut(s) 290, 1347
BsrI ACTGG 2 cut(s) 468, 734
BssAI RCCGGY 3 cut(s) 497, 803, 1219
BssECI CCNNGG 4 cut(s) 91, 951, 960, 1257
BssMI GATC 7 cut(s) 418, 427, 444, 1151, 1450, 1505, 1582
BssSI CACGAG 1 cut(s) 1063
BssT1I CCWWGG 3 cut(s) 91, 960, 1257
Bst2BI CACGAG 1 cut(s) 1063
Bst6I CTCTTC 1 cut(s) 873
BstAFI CTTAAG 1 cut(s) 923
BstAPI GCANNNNNTGC 1 cut(s) 1444
BstAUI TGTACA 2 cut(s) 290, 1347
BstBAI YACGTR 1 cut(s) 1381
BstBI TTCGAA 1 cut(s) 582
BstC8I GCNNGC 4 cut(s) 499, 522, 1057, 1221
BstDEI CTNAG 6 cut(s) 539, 570, 650, 991, 1122, 1434
BstDSI CCRYGG 2 cut(s) 91, 960
BstEII GGTNACC 2 cut(s) 955, 1528
BstF5I GGATG 2 cut(s) 1074, 1178
BstKTI GATC 7 cut(s) 421, 430, 447, 1154, 1453, 1508, 1585
BstMAI GTCTC 4 cut(s) 830, 941, 1163, 1190
BstMBI GATC 7 cut(s) 418, 427, 444, 1151, 1450, 1505, 1582
BstMWI GCNNNNNNNGC 5 cut(s) 494, 880, 1435, 1444, 1585
BstNSI RCATGY 3 cut(s) 416, 485, 524
BstPAI GACNNNNGTC 1 cut(s) 953
BstPI GGTNACC 2 cut(s) 955, 1528
BstSCI CCNGG 3 cut(s) 338, 951, 1524
BstSFI CTRYAG 2 cut(s) 64, 1410
BstV1I GCAGC 4 cut(s) 301, 695, 1402, 1588
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 1450
BstXI CCANNNNNNTGG 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1450
Bsu36I CCTNAGG 1 cut(s) 650
BsuRI GGCC 5 cut(s) 158, 338, 488, 733, 965
BtgI CCRYGG 2 cut(s) 91, 960
BtgZI GCGATG 4 cut(s) 246, 615, 675, 1410
BtrI CACGTC 2 cut(s) 1273, 1300
BtsCI GGATG 2 cut(s) 1074, 1178
BtsI GCAGTG 2 cut(s) 966, 1445
BtsIMutI CAGTG 6 cut(s) 461, 966, 1002, 1128, 1221, 1445
Cac8I GCNNGC 4 cut(s) 499, 522, 1057, 1221
CaiI CAGNNNCTG 1 cut(s) 1418
Cfr10I RCCGGY 3 cut(s) 497, 803, 1219
Cfr13I GGNCC 2 cut(s) 271, 337
Csp6I GTAC 7 cut(s) 179, 291, 435, 753, 843, 1119, 1348
CspAI ACCGGT 1 cut(s) 803
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviQI GTAC 7 cut(s) 179, 291, 435, 753, 843, 1119, 1348
DdeI CTNAG 6 cut(s) 539, 570, 650, 991, 1122, 1434
DpnI GATC 7 cut(s) 420, 429, 446, 1153, 1452, 1507, 1584
DpnII GATC 7 cut(s) 418, 427, 444, 1151, 1450, 1505, 1582
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 3 cut(s) 156, 731, 963
Eam1104I CTCTTC 1 cut(s) 873
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 873
Eco130I CCWWGG 3 cut(s) 91, 960, 1257
Eco31I GGTCTC 2 cut(s) 941, 1190
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 3 cut(s) 109, 246, 853
Eco81I CCTNAGG 1 cut(s) 650
Eco91I GGTNACC 2 cut(s) 955, 1528
EcoO65I GGTNACC 2 cut(s) 955, 1528
EcoRI GAATTC 1 cut(s) 1010
EcoT14I CCWWGG 3 cut(s) 91, 960, 1257
ErhI CCWWGG 3 cut(s) 91, 960, 1257
FaqI GGGAC 4 cut(s) 181, 186, 395, 1310
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 4 cut(s) 315, 709, 1416, 1577
FokI GGATG 2 cut(s) 1081, 1165
Fsp4HI GCNGC 4 cut(s) 315, 709, 1416, 1577
FspBI CTAG 3 cut(s) 311, 840, 894
GluI GCNGC 4 cut(s) 315, 709, 1416, 1577
HaeIII GGCC 5 cut(s) 158, 338, 488, 733, 965
HincII GTYRAC 2 cut(s) 745, 1093
HindII GTYRAC 2 cut(s) 745, 1093
HinfI GANTC 7 cut(s) 74, 80, 174, 458, 572, 1406, 1421
HphI GGTGA 5 cut(s) 163, 478, 622, 949, 1540
Hpy166II GTNNAC 8 cut(s) 238, 291, 293, 552, 591, 745, 1093, 1350
Hpy188I TCNGA 7 cut(s) 33, 79, 85, 423, 825, 1183, 1435
Hpy188III TCNNGA 4 cut(s) 248, 405, 569, 1149
Hpy8I GTNNAC 8 cut(s) 238, 291, 293, 552, 591, 745, 1093, 1350
Hpy99I CGWCG 1 cut(s) 1274
HpyAV CCTTC 6 cut(s) 221, 380, 499, 524, 600, 1440
HpyCH4IV ACGT 4 cut(s) 828, 1272, 1299, 1380
HpyCH4V TGCA 5 cut(s) 371, 665, 792, 971, 1519
HpyF10VI GCNNNNNNNGC 5 cut(s) 494, 880, 1435, 1444, 1585
HpyF3I CTNAG 6 cut(s) 539, 570, 650, 991, 1122, 1434
HpySE526I ACGT 4 cut(s) 828, 1272, 1299, 1380
Kpn2I TCCGGA 2 cut(s) 247, 1148
KpnI GGTACC 1 cut(s) 438
KroI GCCGGC 2 cut(s) 497, 1219
KroNI GCCGGC 2 cut(s) 499, 1221
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 7 cut(s) 418, 427, 444, 1151, 1450, 1505, 1582
LguI GCTCTTC 1 cut(s) 873
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 4 cut(s) 301, 695, 1402, 1588
LweI GCATC 2 cut(s) 179, 652
MaeI CTAG 3 cut(s) 311, 840, 894
MaeII ACGT 4 cut(s) 828, 1272, 1299, 1380
MalI GATC 7 cut(s) 420, 429, 446, 1153, 1452, 1507, 1584
MboI GATC 7 cut(s) 418, 427, 444, 1151, 1450, 1505, 1582
MboII GAAGA 4 cut(s) 115, 890, 1453, 1579
MflI RGATCY 1 cut(s) 1450
MlsI TGGCCA 2 cut(s) 733, 965
MluCI AATT 5 cut(s) 104, 785, 1010, 1173, 1360
MluNI TGGCCA 2 cut(s) 733, 965
MlyI GAGTC 3 cut(s) 168, 467, 581
MmeI TCCRAC 2 cut(s) 726, 743
Mox20I TGGCCA 2 cut(s) 733, 965
MroI TCCGGA 2 cut(s) 247, 1148
MroNI GCCGGC 2 cut(s) 497, 1219
MroXI GAANNNNTTC 1 cut(s) 122
MscI TGGCCA 2 cut(s) 733, 965
MseI TTAA 2 cut(s) 924, 1359
MslI CAYNNNNRTG 1 cut(s) 1159
Msp20I TGGCCA 2 cut(s) 733, 965
MspA1I CMGCKG 2 cut(s) 708, 1415
MspCI CTTAAG 1 cut(s) 923
MspR9I CCNGG 3 cut(s) 340, 953, 1526
Mva1269I GAATGC 1 cut(s) 934
MwoI GCNNNNNNNGC 5 cut(s) 494, 880, 1435, 1444, 1585
NaeI GCCGGC 2 cut(s) 499, 1221
NciI CCSGG 3 cut(s) 340, 953, 1526
NcoI CCATGG 2 cut(s) 91, 960
NdeII GATC 7 cut(s) 418, 427, 444, 1151, 1450, 1505, 1582
NgoMIV GCCGGC 2 cut(s) 497, 1219
NlaIV GGNNCC 3 cut(s) 436, 567, 1452
NmuCI GTSAC 8 cut(s) 39, 151, 194, 459, 861, 955, 1126, 1528
NspI RCATGY 3 cut(s) 416, 485, 524
NspV TTCGAA 1 cut(s) 582
PaeI GCATGC 1 cut(s) 524
PciSI GCTCTTC 1 cut(s) 873
PcsI WCGNNNNNNNCGW 2 cut(s) 678, 825
PctI GAATGC 1 cut(s) 934
PdiI GCCGGC 2 cut(s) 499, 1221
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 4 cut(s) 74, 80, 1406, 1421
PinAI ACCGGT 1 cut(s) 803
PkrI GCNGC 4 cut(s) 316, 710, 1417, 1578
PleI GAGTC 3 cut(s) 168, 466, 580
PpsI GAGTC 3 cut(s) 168, 466, 580
Ppu21I YACGTR 1 cut(s) 1381
PshAI GACNNNNGTC 1 cut(s) 953
PsiI TTATAA 1 cut(s) 1308
PspEI GGTNACC 2 cut(s) 955, 1528
PspN4I GGNNCC 3 cut(s) 436, 567, 1452
PspPI GGNCC 2 cut(s) 271, 337
PstNI CAGNNNCTG 1 cut(s) 1418
PsuI RGATCY 1 cut(s) 1450
PvuII CAGCTG 2 cut(s) 708, 1415
RsaI GTAC 7 cut(s) 180, 292, 436, 754, 844, 1120, 1349
RsaNI GTAC 7 cut(s) 179, 291, 435, 753, 843, 1119, 1348
RseI CAYNNNNRTG 1 cut(s) 1159
SalI GTCGAC 1 cut(s) 743
SapI GCTCTTC 1 cut(s) 873
SaqAI TTAA 2 cut(s) 924, 1359
SatI GCNGC 4 cut(s) 315, 709, 1416, 1577
Sau3AI GATC 7 cut(s) 418, 427, 444, 1151, 1450, 1505, 1582
Sau96I GGNCC 2 cut(s) 271, 337
SchI GAGTC 3 cut(s) 168, 467, 581
ScrFI CCNGG 3 cut(s) 340, 953, 1526
SfaNI GCATC 2 cut(s) 179, 652
SfcI CTRYAG 2 cut(s) 64, 1410
SfuI TTCGAA 1 cut(s) 582
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 1159
SmlI CTYRAG 4 cut(s) 403, 634, 772, 923
SmoI CTYRAG 4 cut(s) 403, 634, 772, 923
SpeI ACTAGT 1 cut(s) 839
SphI GCATGC 1 cut(s) 524
Sse9I AATT 5 cut(s) 104, 785, 1010, 1173, 1360
SsiI CCGC 4 cut(s) 524, 1116, 1137, 1542
SspI AATATT 2 cut(s) 163, 1145
SspMI CTAG 3 cut(s) 311, 840, 894
StyD4I CCNGG 3 cut(s) 338, 951, 1524
StyI CCWWGG 3 cut(s) 91, 960, 1257
TaiI ACGT 4 cut(s) 831, 1275, 1302, 1383
TaqI TCGA 6 cut(s) 307, 582, 744, 796, 918, 1581
TasI AATT 5 cut(s) 104, 785, 1010, 1173, 1360
TatI WGTACW 2 cut(s) 290, 1347
TfiI GAWTC 4 cut(s) 74, 80, 1406, 1421
Tru1I TTAA 2 cut(s) 924, 1359
Tru9I TTAA 2 cut(s) 924, 1359
TscAI CASTG 6 cut(s) 468, 973, 1009, 1135, 1221, 1445
TseFI GTSAC 8 cut(s) 39, 151, 194, 459, 861, 955, 1126, 1528
TseI GCWGC 4 cut(s) 314, 708, 1415, 1576
Tsp45I GTSAC 8 cut(s) 39, 151, 194, 459, 861, 955, 1126, 1528
TspDTI ATGAA 5 cut(s) 535, 1099, 1353, 1413, 1580
TspGWI ACGGA 2 cut(s) 1095, 1364
TspRI CASTG 6 cut(s) 468, 973, 1009, 1135, 1221, 1445
Vha464I CTTAAG 1 cut(s) 923
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 3 cut(s) 104, 785, 1010
XceI RCATGY 3 cut(s) 416, 485, 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 3 cut(s) 311, 840, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.