Rmu_co8427877.1_g000001

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8427877.1
OG0000217
Physical Location & Seq
Reverse (-)
1009 .. 1371
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8427877.1_g000001.1.cds

Sequence Viewer

Length: 363 bp
atggcgactaagggaacttgcgacgttccttactcttattatcagcgggacgtgctttataacggtaaaaccgttgtctataagaaagatgacgggctgtacacgggtgttaattcatacaacttccgctatgaggttacaacactgaaagagccagaaactagagctgatttgccaaccagacagcagaagttgccagacccatcggtcgacccctccataaaacaaaagctacctctgcccgtgccgtctgaatcaaccaccagagtgcaaaacaaggtgacctcgaccaccaccccggaacaagagttgtcaatgctgggattagaaaatgcagcagctcgatctgccgtgaaaccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

120

Amino Acids

13.42

Weight (kDa)

8.62

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AasI GACNNNNNNGTC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 210
AciI CCGC 2 cut(s) 46, 127
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 133
AjiI CACGTC 1 cut(s) 52
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 3 cut(s) 167, 232, 341
AluI AGCT 3 cut(s) 167, 232, 341
ApeKI GCWGC 2 cut(s) 335, 338
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 292
BbvI GCAGC 2 cut(s) 347, 350
BccI CCATC 1 cut(s) 211
BceAI ACGGC 2 cut(s) 232, 335
BcnI CCSGG 1 cut(s) 299
BfaI CTAG 2 cut(s) 162, 361
BisI GCNGC 2 cut(s) 336, 339
BlsI GCNGC 2 cut(s) 337, 340
Bme1390I CCNGG 1 cut(s) 299
BmgBI CACGTC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 347, 350
BseYI CCCAGC 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 2 cut(s) 46, 127
BsrGI TGTACA 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 65, 73
BstAPI GCANNNNNTGC 1 cut(s) 193
BstAUI TGTACA 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 9
BstEII GGTNACC 1 cut(s) 280
BstKTI GATC 1 cut(s) 347
BstMBI GATC 1 cut(s) 344
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 4 cut(s) 52, 193, 238, 347
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 347, 350
BtrI CACGTC 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 143
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 5 cut(s) 97, 154, 167, 232, 341
CviKI_1 RGCY 5 cut(s) 97, 154, 167, 232, 341
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Eco91I GGTNACC 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 280
FaiI YATR 5 cut(s) 60, 81, 118, 132, 221
FaqI GGGAC 1 cut(s) 62
FauI CCCGC 1 cut(s) 39
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 336, 339
Fsp4HI GCNGC 2 cut(s) 336, 339
FspBI CTAG 2 cut(s) 162, 361
GluI GCNGC 2 cut(s) 336, 339
GsaI CCCAGC 1 cut(s) 323
HapII CCGG 1 cut(s) 299
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 102, 211
Hpy188I TCNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 102, 211
Hpy99I CGWCG 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 65, 73
HpyCH4IV ACGT 2 cut(s) 24, 51
HpyCH4V TGCA 2 cut(s) 271, 335
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 193, 238, 347
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 2 cut(s) 24, 51
Kzo9I GATC 1 cut(s) 344
LpnPI CCDG 6 cut(s) 168, 193, 210, 277, 305, 312
Lsp1109I GCAGC 2 cut(s) 347, 350
MaeI CTAG 2 cut(s) 162, 361
MaeII ACGT 2 cut(s) 24, 51
MaeIII GTNAC 2 cut(s) 136, 280
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MluCI AATT 1 cut(s) 112
MnlI CCTC 4 cut(s) 127, 226, 246, 295
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 299
MwoI GCNNNNNNNGC 4 cut(s) 52, 193, 238, 347
NciI CCSGG 1 cut(s) 299
NdeII GATC 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 337, 340
PsiI TTATAA 1 cut(s) 60
PspEI GGTNACC 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 319
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 266
SalI GTCGAC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 336, 339
Sau3AI GATC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 299
SetI ASST 9 cut(s) 27, 54, 138, 169, 234, 238, 282, 287, 343
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 1 cut(s) 112
SsiI CCGC 2 cut(s) 46, 127
SspMI CTAG 2 cut(s) 162, 361
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 65, 73
TaiI ACGT 2 cut(s) 27, 54
TaqI TCGA 3 cut(s) 210, 287, 343
TaqII GACCGA 1 cut(s) 196
TasI AATT 1 cut(s) 112
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 335, 338
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 2 cut(s) 162, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.