Rroxscaffold_4G00315170

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000217
Physical Location & Seq
Reverse (-)
39382177 .. 39383962
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315170.1

Sequence Viewer

Length: 360 bp
ATGGACACAGCTCTCGCCGTTAACGACAGCCCAAACAGAGACTCCACTATCAGCCTCAAGTTTGCGGAAAAAGATTCCAGGACCCGTAGTTGGAATGGCAGCGTTTCATTGAAGTTGGGTGTCAAAACAACTCTCCAAGTCAAATATGTTCCACAAATTCTTGACGGGAATATCGACCTTTCGGCTGAGGTTACGACAGCATACCAGTGGGGAGAAACTACCACAGTTGAACATACCAGGGAAGCCAATTATGCTGTTGTTGTGCCACCACTATCCAAGATGAAGGTGAGTCTCATAGCTTCAAGCCTTCAAGGGCTTCATGCGATGTGCCCTTCTCCTACAGTCAGCGTGAGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

119

Amino Acids

12.82

Weight (kDa)

6.71

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 4 cut(s) 112, 230, 303, 311
AjnI CCWGG 2 cut(s) 77, 236
AluBI AGCT 2 cut(s) 11, 299
AluI AGCT 2 cut(s) 11, 299
Alw26I GTCTC 2 cut(s) 33, 296
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 332
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 2 cut(s) 79, 238
BcoDI GTCTC 2 cut(s) 33, 296
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 79, 238
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 2 cut(s) 79, 238
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 2 cut(s) 79, 238
BseDI CCNNGG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 205
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 33, 296
Bsp1286I GDGCHC 1 cut(s) 332
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 79, 238
Bst4CI ACNGT 2 cut(s) 226, 343
BstDEI CTNAG 1 cut(s) 186
BstMAI GTCTC 2 cut(s) 33, 296
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 79, 238
BstSCI CCNGG 2 cut(s) 77, 236
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 1 cut(s) 320
CviJI RGCY 8 cut(s) 11, 30, 54, 185, 245, 299, 306, 316
CviKI_1 RGCY 8 cut(s) 11, 30, 54, 185, 245, 299, 306, 316
DdeI CTNAG 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 77, 236
FaeI CATG 1 cut(s) 323
FaiI YATR 6 cut(s) 147, 202, 234, 252, 296, 321
FatI CATG 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 323
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 41, 74, 289
HpaI GTTAAC 1 cut(s) 22
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 277, 317, 342
HpyCH4III ACNGT 2 cut(s) 226, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 1 cut(s) 323
KspAI GTTAAC 1 cut(s) 22
LpnPI CCDG 5 cut(s) 64, 91, 218, 223, 250
Lsp1109I GCAGC 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 2 cut(s) 156, 247
MlyI GAGTC 2 cut(s) 35, 298
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 2 cut(s) 65, 181
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 79, 238
MvaI CCWGG 2 cut(s) 79, 238
MwoI GCNNNNNNNGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 83
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 171
PfeI GAWTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 2 cut(s) 35, 297
PpsI GAGTC 2 cut(s) 35, 297
PpuMI RGGWCCY 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 77, 236
PspGI CCWGG 2 cut(s) 77, 236
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 81
PspPPI RGGWCCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 205
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 2 cut(s) 35, 298
ScrFI CCNGG 2 cut(s) 79, 238
SduI GDGCHC 1 cut(s) 332
SetI ASST 5 cut(s) 13, 180, 192, 288, 301
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 2 cut(s) 156, 247
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 77, 236
TaaI ACNGT 2 cut(s) 226, 343
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 156, 247
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 212
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 96, 296, 308
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.