Rh2AG571500

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000217
Physical Location & Seq
Forward (+)
80220055 .. 80221668
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG571500.1

Sequence Viewer

Length: 1614 bp
ATGTCTTTCCTATTACCACCCACTATTGCTCTGAAATCATCCCACCTCAACGCTTATGTGAACTATAGCGATGATTCAGCTGCTTCCGCGGCCTATGGCTTTCTCCAAGTCAACGGAGGGAATGTCTTCAGCCCGTTAGCAAAGTTCGAAGTCGTGACGGCCAATACTGGGACGGGACTAGTACACATAAGATGCTCACATAATAAAAAGTTCGTGCGATGGAGAACTCAGCATCATGGGTACCTTTCTCCGGAGGCTGATGAACCAGAGGAGGACCAATCCATATGGTCGTGTACACTGTTTCAGCCTCAAGTAGCTGAAGATGGCGACCCCAAGAAAGTCCTGTTGTTCCATGTCGGATCAAAACAATATGCAAGAGCAATAAACGAAGGTGGAGTTACATACATGAGAACAGATGTCATTTGGAATCATCAGAGTACCTTTTATATCACTGACTTGGAGTCACTGGTGATATTGCCAAAGCATGTAGCCTTCAAAGCCGACAACGACCGTTACCTTCAGCATGCGGACAGTAATCAGCTCAGGTTCATGTCCACTGATAAGGGGATTCCTGAGTCGTGGTTCGAAGTGGACACAGATGGCGATGGAATGGCGAGAATCAAGGTGTTCAACAGCCTGAGCAACAACCACCTGAGGTTCGGCGGCGCATCCTTCGGCAACGCTATTTTTGCTGACGGGAACTCCAACGGCTTCCCGGCTCCCACTTTGTTTTTGCCAGTCAAGGTCGACAGTAGTACGGTCGCTCTCAAATGCTTAGGCAACAACAGATTTTGCACCCGACACACCGGTTTTATACAAGACGGTCTGAGCGCGAACGAAACTAGTACCAGCATTTCAAACTCGGCACGGTTCAGGCTGGAAGAGCTTGTTCTCTCAAGGAGAATCTACAATACCGATTTTGACCTTGCCAATGCCATAATCTACGGCGAGACCCCGGTCACCATGGCCACTGCAAACGCCAGCAACAACAGCTCAGTAGACAACACTGTGGAATTCAAGTTCGCGTACACGGAGAGTAAGAGCAGCACATGGAGCTCCAGCCACTCGTGGATGGTGGGCGTGAGTGTCACCGTCAGCTTAAATATTCCATTCGGACTCGGCGGTGTTGAAACCACATATTCCGGGGAGTATAACGGATCCTATGAATGGGGGGAAACAATTACAACCGAAAACACATTGGAGACTACCTACACCGCCACTGTGCCGGCAAACACTTCTATATCTGTGAGCCTGATGGCGACCAAGGGATATTGCGATGTGCCTTACTCTTATTATCAGCGAGACGTGCTTTATAACGGTGAAACCGTTGTCTATAAGAAGGATGATGGGCTGTACACGGGAATAAATTCATACAACTTCCACTACGTGGTTACAACTCTGAGACAGCCAGAATCTAGAGCTGATTTGTCTACCAAAGAGCAGAAGTTGCCGGACCCATCCGTCGACCCGTCCAAACAAGAAATTGTACCTATGCCTGTACCATCTGCATCAACCACCAGAGTGCAAAACGTGACCTCAACCACCACCCCGGACCAAGAGTTGTCAAAGCTGGGATTAGAAGATGCAGTGGCTCGATCTGCCATGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

537

Amino Acids

59.22

Weight (kDa)

5.36

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 5 - 135 8.2e-19 Agglutinin domain
Aerolysin PF01117 307 - 431 2.1e-08 Aerolysin toxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1314
AasI GACNNNNNNGTC 1 cut(s) 1460
Acc65I GGTACC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 240
AccB7I CCANNNNNTGG 1 cut(s) 1387
AccI GTMKAC 4 cut(s) 747, 999, 1430, 1464
AccII CGCG 3 cut(s) 89, 833, 1025
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 6 cut(s) 87, 89, 527, 663, 1122, 1215
AclWI GGATC 3 cut(s) 367, 1152, 1165
AcoI YGGCCR 2 cut(s) 159, 966
AcsI RAATTY 2 cut(s) 1013, 1366
AcuI CTGAAG 3 cut(s) 112, 339, 503
AdeI CACNNNGTG 1 cut(s) 1387
AfiI CCNNNNNNNGG 4 cut(s) 168, 250, 1167, 1387
AgeI ACCGGT 1 cut(s) 806
AgsI TTSAA 5 cut(s) 496, 631, 858, 1018, 1130
AhdI GACNNNNNGTC 1 cut(s) 460
AhlI ACTAGT 2 cut(s) 178, 842
AjiI CACGTC 1 cut(s) 1306
AleI CACNNNNGTG 1 cut(s) 1520
AloI GAACNNNNNNTCC 2 cut(s) 1004, 1036
AluBI AGCT 9 cut(s) 80, 317, 541, 886, 993, 1056, 1098, 1421, 1570
AluI AGCT 9 cut(s) 80, 317, 541, 886, 993, 1056, 1098, 1421, 1570
Alw21I GWGCWC 1 cut(s) 1058
Alw26I GTCTC 4 cut(s) 944, 1196, 1296, 1396
AlwI GGATC 3 cut(s) 367, 1152, 1165
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 3 cut(s) 90, 159, 966
ApeKI GCWGC 2 cut(s) 80, 1044
ApoI RAATTY 2 cut(s) 1013, 1366
AsiGI ACCGGT 1 cut(s) 806
Asp700I GAANNNNTTC 2 cut(s) 125, 1366
Asp718I GGTACC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 668, 833
AspS9I GGNCC 3 cut(s) 274, 1453, 1552
AsuC2I CCSGG 4 cut(s) 716, 956, 1144, 1550
AsuHPI GGTGA 4 cut(s) 481, 952, 1081, 1331
AsuII TTCGAA 2 cut(s) 147, 585
AvaII GGWCC 3 cut(s) 274, 1453, 1552
AxyI CCTNAGG 1 cut(s) 653
BalI TGGCCA 1 cut(s) 968
BamHI GGATCC 1 cut(s) 1157
BanI GGYRCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 1058
BauI CACGAG 1 cut(s) 1066
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 1058
BbvI GCAGC 2 cut(s) 67, 1056
BccI CCATC 9 cut(s) 213, 317, 593, 599, 1066, 1249, 1340, 1465, 1510
BceAI ACGGC 3 cut(s) 174, 724, 961
BcnI CCSGG 4 cut(s) 716, 956, 1144, 1550
BcoDI GTCTC 4 cut(s) 944, 1196, 1296, 1396
BcuI ACTAGT 2 cut(s) 178, 842
BfaI CTAG 4 cut(s) 179, 843, 1416, 1612
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 4 cut(s) 81, 90, 664, 1045
BlsI GCNGC 4 cut(s) 82, 91, 665, 1046
Bme1390I CCNGG 4 cut(s) 716, 956, 1144, 1550
Bme18I GGWCC 3 cut(s) 274, 1453, 1552
BmeRI GACNNNNNGTC 1 cut(s) 460
BmgBI CACGTC 1 cut(s) 1306
BmgT120I GGNCC 3 cut(s) 274, 1453, 1552
BmiI GGNNCC 4 cut(s) 242, 720, 1159, 1455
BmrFI CCNGG 4 cut(s) 716, 956, 1144, 1550
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 5 cut(s) 182, 241, 677, 1517, 1573
BmuI ACTGGG 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 956
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 1042
Bpu10I CCTNAGC 3 cut(s) 542, 638, 775
Bpu14I TTCGAA 2 cut(s) 147, 585
BpuEI CTTGAG 2 cut(s) 294, 880
BpuMI CCSGG 4 cut(s) 716, 956, 1144, 1550
BsaAI YACGTR 1 cut(s) 1387
BsaI GGTCTC 1 cut(s) 944
BsaJI CCNNGG 6 cut(s) 87, 954, 963, 1143, 1263, 1548
BsaWI WCCGGW 2 cut(s) 250, 806
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 686, 716
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 250, 1167, 1387
Bse118I RCCGGY 2 cut(s) 806, 1225
Bse1I ACTGG 3 cut(s) 172, 471, 737
Bse21I CCTNAGG 1 cut(s) 653
BseAI TCCGGA 1 cut(s) 250
BseDI CCNNGG 6 cut(s) 87, 954, 963, 1143, 1263, 1548
BseGI GGATG 5 cut(s) 38, 668, 1077, 1348, 1457
BseLI CCNNNNNNNGG 4 cut(s) 168, 250, 1167, 1387
BseMII CTCAG 8 cut(s) 242, 556, 564, 629, 644, 818, 1008, 1391
BseNI ACTGG 3 cut(s) 172, 471, 737
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 67, 1056
BseYI CCCAGC 1 cut(s) 1570
Bsh1236I CGCG 3 cut(s) 89, 833, 1025
Bsh1285I CGRYCG 2 cut(s) 511, 762
BshFI GGCC 3 cut(s) 92, 161, 968
BshNI GGYRCC 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 806
BsiEI CGRYCG 2 cut(s) 511, 762
BsiHKAI GWGCWC 1 cut(s) 1058
BsiSI CCGG 8 cut(s) 251, 716, 807, 956, 1143, 1226, 1451, 1550
BslFI GGGAC 2 cut(s) 184, 189
BslI CCNNNNNNNGG 4 cut(s) 168, 250, 1167, 1387
BsmAI GTCTC 4 cut(s) 944, 1196, 1296, 1396
BsmBI CGTCTC 1 cut(s) 1296
BsmFI GGGAC 2 cut(s) 184, 189
BsnI GGCC 3 cut(s) 92, 161, 968
Bso31I GGTCTC 1 cut(s) 944
Bsp119I TTCGAA 2 cut(s) 147, 585
Bsp1286I GDGCHC 1 cut(s) 1058
Bsp13I TCCGGA 1 cut(s) 250
Bsp1407I TGTACA 2 cut(s) 293, 1353
Bsp143I GATC 3 cut(s) 359, 1157, 1595
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 6 cut(s) 87, 89, 527, 663, 1122, 1215
BspANI GGCC 3 cut(s) 92, 161, 968
BspCNI CTCAG 8 cut(s) 241, 555, 565, 630, 645, 819, 1007, 1392
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 3 cut(s) 89, 833, 1025
BspLI GGNNCC 4 cut(s) 242, 720, 1159, 1455
BspPI GGATC 3 cut(s) 367, 1152, 1165
BspQI GCTCTTC 1 cut(s) 876
BspT104I TTCGAA 2 cut(s) 147, 585
BspT107I GGYRCC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 944
BsrFI RCCGGY 2 cut(s) 806, 1225
BsrGI TGTACA 2 cut(s) 293, 1353
BsrI ACTGG 3 cut(s) 172, 471, 737
BssAI RCCGGY 2 cut(s) 806, 1225
BssECI CCNNGG 6 cut(s) 87, 954, 963, 1143, 1263, 1548
BssMI GATC 3 cut(s) 359, 1157, 1595
BssSI CACGAG 1 cut(s) 1066
BssT1I CCWWGG 2 cut(s) 963, 1263
Bst2BI CACGAG 1 cut(s) 1066
Bst6I CTCTTC 1 cut(s) 876
BstAPI GCANNNNNTGC 1 cut(s) 1447
BstAUI TGTACA 2 cut(s) 293, 1353
BstBAI YACGTR 1 cut(s) 1387
BstBI TTCGAA 2 cut(s) 147, 585
BstC8I GCNNGC 3 cut(s) 525, 982, 1227
BstDEI CTNAG 9 cut(s) 228, 542, 573, 638, 653, 775, 827, 994, 1400
BstDSI CCRYGG 2 cut(s) 87, 963
BstEII GGTNACC 1 cut(s) 958
BstF5I GGATG 5 cut(s) 38, 668, 1077, 1348, 1457
BstFNI CGCG 3 cut(s) 89, 833, 1025
BstHHI GCGC 2 cut(s) 668, 833
BstKTI GATC 3 cut(s) 362, 1160, 1598
BstMAI GTCTC 4 cut(s) 944, 1196, 1296, 1396
BstMBI GATC 3 cut(s) 359, 1157, 1595
BstMCI CGRYCG 2 cut(s) 511, 762
BstNSI RCATGY 2 cut(s) 488, 527
BstPAI GACNNNNGTC 1 cut(s) 956
BstPI GGTNACC 1 cut(s) 958
BstSCI CCNGG 4 cut(s) 714, 954, 1142, 1548
BstSFI CTRYAG 1 cut(s) 64
BstUI CGCG 3 cut(s) 89, 833, 1025
BstV1I GCAGC 2 cut(s) 67, 1056
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 1157
BstYI RGATCY 1 cut(s) 1157
Bsu36I CCTNAGG 1 cut(s) 653
BsuRI GGCC 3 cut(s) 92, 161, 968
BtgI CCRYGG 2 cut(s) 87, 963
BtgZI GCGATG 4 cut(s) 84, 232, 618, 1290
BtrI CACGTC 1 cut(s) 1306
BtsCI GGATG 5 cut(s) 38, 668, 1077, 1348, 1457
BtsI GCAGTG 2 cut(s) 969, 1593
BtsIMutI CAGTG 8 cut(s) 296, 450, 464, 555, 969, 1005, 1218, 1593
Cac8I GCNNGC 3 cut(s) 525, 982, 1227
CfoI GCGC 2 cut(s) 668, 833
Cfr10I RCCGGY 2 cut(s) 806, 1225
Cfr13I GGNCC 3 cut(s) 274, 1453, 1552
Cfr42I CCGCGG 1 cut(s) 90
CspAI ACCGGT 1 cut(s) 806
CviAII CATG 9 cut(s) 236, 353, 406, 485, 524, 550, 964, 1050, 1603
DdeI CTNAG 9 cut(s) 228, 542, 573, 638, 653, 775, 827, 994, 1400
DpnI GATC 3 cut(s) 361, 1159, 1597
DpnII GATC 3 cut(s) 359, 1157, 1595
DraIII CACNNNGTG 1 cut(s) 1387
DrdI GACNNNNNNGTC 1 cut(s) 1460
DriI GACNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 1460
EaeI YGGCCR 2 cut(s) 159, 966
Eam1104I CTCTTC 1 cut(s) 876
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 876
Ecl136II GAGCTC 1 cut(s) 1056
Eco130I CCWWGG 2 cut(s) 963, 1263
Eco24I GRGCYC 1 cut(s) 1058
Eco31I GGTCTC 1 cut(s) 944
Eco47I GGWCC 3 cut(s) 274, 1453, 1552
Eco53kI GAGCTC 1 cut(s) 1056
Eco57I CTGAAG 3 cut(s) 112, 339, 503
Eco81I CCTNAGG 1 cut(s) 653
Eco91I GGTNACC 1 cut(s) 958
EcoICRI GAGCTC 1 cut(s) 1056
EcoO65I GGTNACC 1 cut(s) 958
EcoRI GAATTC 1 cut(s) 1013
EcoT14I CCWWGG 2 cut(s) 963, 1263
EcoT38I GRGCYC 1 cut(s) 1058
ErhI CCWWGG 2 cut(s) 963, 1263
Esp3I CGTCTC 1 cut(s) 1296
FaeI CATG 9 cut(s) 239, 356, 409, 488, 527, 553, 967, 1053, 1606
FaqI GGGAC 2 cut(s) 184, 189
FatI CATG 9 cut(s) 235, 352, 405, 484, 523, 549, 963, 1049, 1602
FauNDI CATATG 1 cut(s) 284
FblI GTMKAC 4 cut(s) 747, 999, 1430, 1464
Fnu4HI GCNGC 4 cut(s) 81, 90, 664, 1045
FokI GGATG 5 cut(s) 25, 655, 1084, 1355, 1444
FriOI GRGCYC 1 cut(s) 1058
Fsp4HI GCNGC 4 cut(s) 81, 90, 664, 1045
FspBI CTAG 4 cut(s) 179, 843, 1416, 1612
GlaI GCGC 2 cut(s) 667, 832
GluI GCNGC 4 cut(s) 81, 90, 664, 1045
GsaI CCCAGC 1 cut(s) 1574
GsuI CTGGAG 1 cut(s) 1042
HaeIII GGCC 3 cut(s) 92, 161, 968
HapII CCGG 8 cut(s) 251, 716, 807, 956, 1143, 1226, 1451, 1550
HhaI GCGC 2 cut(s) 668, 833
Hin1II CATG 9 cut(s) 239, 356, 409, 488, 527, 553, 967, 1053, 1606
Hin6I GCGC 2 cut(s) 666, 831
HinP1I GCGC 2 cut(s) 666, 831
HincII GTYRAC 3 cut(s) 112, 748, 1465
HindII GTYRAC 3 cut(s) 112, 748, 1465
HinfI GANTC 9 cut(s) 74, 427, 461, 568, 575, 618, 903, 1116, 1412
HpaII CCGG 8 cut(s) 251, 716, 807, 956, 1143, 1226, 1451, 1550
HphI GGTGA 4 cut(s) 481, 952, 1081, 1331
Hpy188I TCNGA 6 cut(s) 33, 359, 435, 828, 1115, 1401
Hpy188III TCNNGA 4 cut(s) 154, 251, 572, 1416
Hpy99I CGWCG 1 cut(s) 1466
HpyAV CCTTC 5 cut(s) 383, 502, 527, 682, 1333
HpyCH4IV ACGT 3 cut(s) 1305, 1386, 1530
HpyCH4V TGCA 6 cut(s) 374, 795, 974, 1508, 1525, 1586
HpyF3I CTNAG 9 cut(s) 228, 542, 573, 638, 653, 775, 827, 994, 1400
HpySE526I ACGT 3 cut(s) 1305, 1386, 1530
Hsp92II CATG 9 cut(s) 239, 356, 409, 488, 527, 553, 967, 1053, 1606
HspAI GCGC 2 cut(s) 666, 831
Kpn2I TCCGGA 1 cut(s) 250
KpnI GGTACC 1 cut(s) 244
KroI GCCGGC 1 cut(s) 1225
KroNI GCCGGC 1 cut(s) 1227
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 3 cut(s) 359, 1157, 1595
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 3 cut(s) 724, 1053, 1061
Lsp1109I GCAGC 2 cut(s) 67, 1056
LweI GCATC 5 cut(s) 182, 241, 677, 1517, 1573
MaeI CTAG 4 cut(s) 179, 843, 1416, 1612
MaeII ACGT 3 cut(s) 1305, 1386, 1530
MaeIII GTNAC 8 cut(s) 154, 397, 462, 512, 958, 1087, 1390, 1531
MalI GATC 3 cut(s) 361, 1159, 1597
MboI GATC 3 cut(s) 359, 1157, 1595
MboII GAAGA 4 cut(s) 118, 332, 893, 1592
MflI RGATCY 1 cut(s) 1157
MhlI GDGCHC 1 cut(s) 1058
MlsI TGGCCA 1 cut(s) 968
MluCI AATT 4 cut(s) 1013, 1179, 1366, 1482
MluNI TGGCCA 1 cut(s) 968
MlyI GAGTC 3 cut(s) 470, 584, 1110
MmeI TCCRAC 2 cut(s) 337, 729
MnlI CCTC 8 cut(s) 56, 110, 247, 262, 265, 318, 648, 1546
Mox20I TGGCCA 1 cut(s) 968
MroI TCCGGA 1 cut(s) 250
MroNI GCCGGC 1 cut(s) 1225
MroXI GAANNNNTTC 2 cut(s) 125, 1366
MscI TGGCCA 1 cut(s) 968
MseI TTAA 1 cut(s) 1100
MslI CAYNNNNRTG 1 cut(s) 1520
Msp20I TGGCCA 1 cut(s) 968
MspA1I CMGCKG 2 cut(s) 80, 89
MspI CCGG 8 cut(s) 251, 716, 807, 956, 1143, 1226, 1451, 1550
MspR9I CCNGG 4 cut(s) 716, 956, 1144, 1550
MvnI CGCG 3 cut(s) 89, 833, 1025
NaeI GCCGGC 1 cut(s) 1227
NciI CCSGG 4 cut(s) 716, 956, 1144, 1550
NcoI CCATGG 1 cut(s) 963
NdeI CATATG 1 cut(s) 284
NdeII GATC 3 cut(s) 359, 1157, 1595
NgoMIV GCCGGC 1 cut(s) 1225
NlaIII CATG 9 cut(s) 239, 356, 409, 488, 527, 553, 967, 1053, 1606
NlaIV GGNNCC 4 cut(s) 242, 720, 1159, 1455
NmeAIII GCCGAG 2 cut(s) 842, 1098
NmuCI GTSAC 5 cut(s) 154, 462, 958, 1087, 1531
NspI RCATGY 2 cut(s) 488, 527
NspV TTCGAA 2 cut(s) 147, 585
OliI CACNNNNGTG 1 cut(s) 1520
PaeI GCATGC 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 1323
PdiI GCCGGC 1 cut(s) 1227
PdmI GAANNNNTTC 2 cut(s) 125, 1366
PfeI GAWTC 6 cut(s) 74, 427, 568, 618, 903, 1412
PflMI CCANNNNNTGG 1 cut(s) 1387
PinAI ACCGGT 1 cut(s) 806
PkrI GCNGC 4 cut(s) 82, 91, 665, 1046
PleI GAGTC 3 cut(s) 469, 583, 1110
PpsI GAGTC 3 cut(s) 469, 583, 1110
Ppu21I YACGTR 1 cut(s) 1387
PshAI GACNNNNGTC 1 cut(s) 956
PsiI TTATAA 1 cut(s) 1314
Psp124BI GAGCTC 1 cut(s) 1058
PspEI GGTNACC 1 cut(s) 958
PspFI CCCAGC 1 cut(s) 1570
PspN4I GGNNCC 4 cut(s) 242, 720, 1159, 1455
PspPI GGNCC 3 cut(s) 274, 1453, 1552
PsuI RGATCY 1 cut(s) 1157
PvuII CAGCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 1520
SacI GAGCTC 1 cut(s) 1058
SacII CCGCGG 1 cut(s) 90
SalI GTCGAC 2 cut(s) 746, 1463
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 1 cut(s) 1100
SatI GCNGC 4 cut(s) 81, 90, 664, 1045
Sau3AI GATC 3 cut(s) 359, 1157, 1595
Sau96I GGNCC 3 cut(s) 274, 1453, 1552
SchI GAGTC 3 cut(s) 470, 584, 1110
ScrFI CCNGG 4 cut(s) 716, 956, 1144, 1550
SduI GDGCHC 1 cut(s) 1058
SfaNI GCATC 5 cut(s) 182, 241, 677, 1517, 1573
SfcI CTRYAG 1 cut(s) 64
Sfr303I CCGCGG 1 cut(s) 90
SfuI TTCGAA 2 cut(s) 147, 585
SgrBI CCGCGG 1 cut(s) 90
SinI GGWCC 3 cut(s) 274, 1453, 1552
SmiMI CAYNNNNRTG 1 cut(s) 1520
SmlI CTYRAG 2 cut(s) 309, 895
SmoI CTYRAG 2 cut(s) 309, 895
SpeI ACTAGT 2 cut(s) 178, 842
SphI GCATGC 1 cut(s) 527
Sse9I AATT 4 cut(s) 1013, 1179, 1366, 1482
SsiI CCGC 6 cut(s) 87, 89, 527, 663, 1122, 1215
SspI AATATT 1 cut(s) 1105
SspMI CTAG 4 cut(s) 179, 843, 1416, 1612
SstI GAGCTC 1 cut(s) 1058
StyD4I CCNGG 4 cut(s) 714, 954, 1142, 1548
StyI CCWWGG 2 cut(s) 963, 1263
TaiI ACGT 3 cut(s) 1308, 1389, 1533
TaqI TCGA 5 cut(s) 147, 585, 747, 1464, 1594
TasI AATT 4 cut(s) 1013, 1179, 1366, 1482
TatI WGTACW 3 cut(s) 181, 293, 1353
TauI GCSGC 2 cut(s) 92, 666
TfiI GAWTC 6 cut(s) 74, 427, 568, 618, 903, 1412
Tru1I TTAA 1 cut(s) 1100
Tru9I TTAA 1 cut(s) 1100
TscAI CASTG 8 cut(s) 303, 457, 471, 562, 976, 1012, 1225, 1593
TseFI GTSAC 5 cut(s) 154, 462, 958, 1087, 1531
TseI GCWGC 2 cut(s) 80, 1044
Tsp45I GTSAC 5 cut(s) 154, 462, 958, 1087, 1531
TspDTI ATGAA 4 cut(s) 276, 538, 1179, 1359
TspGWI ACGGA 4 cut(s) 129, 1046, 1170, 1450
TspRI CASTG 8 cut(s) 303, 457, 471, 562, 976, 1012, 1225, 1593
Van91I CCANNNNNTGG 1 cut(s) 1387
VpaK11BI GGWCC 3 cut(s) 274, 1453, 1552
XapI RAATTY 2 cut(s) 1013, 1366
XbaI TCTAGA 1 cut(s) 1415
XceI RCATGY 2 cut(s) 488, 527
XmiI GTMKAC 4 cut(s) 747, 999, 1430, 1464
XmnI GAANNNNTTC 2 cut(s) 125, 1366
XspI CTAG 4 cut(s) 179, 843, 1416, 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.