Rmu_sc0004918.1_g000007

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004918.1
OG0000217
Physical Location & Seq
Forward (+)
16580 .. 17670
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004918.1_g000007.1.cds

Sequence Viewer

Length: 909 bp
atgtctttcttattaccacctactattgttctgaaatcatcgtggttcaacacttacttgaactacaacaatgattctgattccgagacgcatggctttctcaaagtcaacggatcgaatatcttcagcccattagcaaagttcgaagtggtgacagccaatactgggacgggactggtacatatcagatgttctcagaacagaaagttcctgcaaaggaaatttgagagtgatgtgaaccttactccggaggctgatgaaccagaagaggaccaatccaaatggtcgtgtacactatttgagcctcaggtagttgatggtaaccctgaccaagcccggttgttccatgtccaagcaaagctatatgcaacggcatggaacgaaggtggaggtgaaaacaaaaagttcttcagattacatgttgctacgagtgttcagggtacctttgatatcattgacttggagtcgttggtgatattgccaaagcatgtggccttcaaaggtcacaccggcaattaccttcagcttgtggcggatgctaagctcaagttcatatccaccgataaggggattcctgagtcctggtttgaggtgtccactgatggcgacggaatggtgcaaatcaaatcctaccacgacaatagctacttttttaacagcagtgacaggatttggtctgacccaagggttgccgccaccgatccaagcaccttgttttggccggtgaaggtcgacagtaataaggtcgctttcaaaagcaacaacaaattttgcgcccaaatcagtgatgctaatgcaacagacggatacctggagaaggccggctcaatgcattatcttgaatttctccccattttttctctaaatcttgaactactgcttcctttgaacactgagatgacaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

302

Amino Acids

33.94

Weight (kDa)

5.28

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 732
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 2 cut(s) 533, 693
AclWI GGATC 2 cut(s) 121, 695
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 3 cut(s) 221, 767, 842
AcuI CTGAAG 3 cut(s) 109, 394, 506
AfaI GTAC 3 cut(s) 180, 292, 442
AfiI CCNNNNNNNGG 5 cut(s) 165, 247, 567, 717, 817
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 7 cut(s) 49, 61, 499, 754, 842, 872, 889
AhdI GACNNNNNGTC 1 cut(s) 463
AjnI CCWGG 2 cut(s) 581, 810
AluBI AGCT 4 cut(s) 361, 526, 544, 645
AluI AGCT 4 cut(s) 361, 526, 544, 645
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 121, 695
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 3 cut(s) 492, 719, 819
ApoI RAATTY 3 cut(s) 221, 767, 842
Asp700I GAANNNNTTC 1 cut(s) 122
Asp718I GGTACC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 776
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 4 cut(s) 163, 404, 484, 736
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 306
BanI GGYRCC 1 cut(s) 440
BccI CCATC 2 cut(s) 311, 596
BceAI ACGGC 1 cut(s) 387
BciT130I CCWGG 2 cut(s) 583, 812
BciVI GTATCC 1 cut(s) 800
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 800
BisI GCNGC 1 cut(s) 693
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 694
Bme1390I CCNGG 3 cut(s) 337, 583, 812
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 3 cut(s) 337, 583, 812
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 526, 778
BmuI ACTGGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 833
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 683
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 247, 567, 717, 817
Bse118I RCCGGY 3 cut(s) 509, 721, 821
Bse1I ACTGG 2 cut(s) 169, 180
Bse21I CCTNAGG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 583, 812
BseDI CCNNGG 1 cut(s) 683
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 5 cut(s) 165, 247, 567, 717, 817
BseMII CTCAG 4 cut(s) 209, 320, 567, 885
BseNI ACTGG 2 cut(s) 169, 180
BshFI GGCC 3 cut(s) 494, 721, 821
BshNI GGYRCC 1 cut(s) 440
BsiSI CCGG 5 cut(s) 248, 337, 510, 722, 822
BslFI GGGAC 2 cut(s) 181, 186
BslI CCNNNNNNNGG 5 cut(s) 165, 247, 567, 717, 817
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 2 cut(s) 181, 186
BsnI GGCC 3 cut(s) 494, 721, 821
Bsp119I TTCGAA 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 290
Bsp143I GATC 2 cut(s) 113, 700
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 2 cut(s) 533, 693
BspANI GGCC 3 cut(s) 494, 721, 821
BspCNI CTCAG 4 cut(s) 208, 319, 568, 886
BspEI TCCGGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 2 cut(s) 121, 695
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 440
BsrFI RCCGGY 3 cut(s) 509, 721, 821
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 2 cut(s) 169, 180
BssAI RCCGGY 3 cut(s) 509, 721, 821
BssECI CCNNGG 1 cut(s) 683
BssMI GATC 2 cut(s) 113, 700
BssT1I CCWWGG 1 cut(s) 683
Bst2UI CCWGG 2 cut(s) 583, 812
Bst4CI ACNGT 1 cut(s) 737
Bst6I CTCTTC 1 cut(s) 261
BstAUI TGTACA 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 823
BstDEI CTNAG 5 cut(s) 195, 306, 540, 576, 894
BstEII GGTNACC 1 cut(s) 320
BstENI CCTNNNNNAGG 1 cut(s) 815
BstF5I GGATG 1 cut(s) 541
BstHHI GCGC 1 cut(s) 776
BstKTI GATC 2 cut(s) 116, 703
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 113, 700
BstNI CCWGG 2 cut(s) 583, 812
BstNSI RCATGY 2 cut(s) 422, 491
BstPI GGTNACC 1 cut(s) 320
BstSCI CCNGG 3 cut(s) 335, 581, 810
Bsu36I CCTNAGG 1 cut(s) 306
BsuI GTATCC 1 cut(s) 800
BsuRI GGCC 3 cut(s) 494, 721, 821
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 4 cut(s) 597, 667, 790, 891
Cac8I GCNNGC 1 cut(s) 823
CfoI GCGC 1 cut(s) 776
Cfr10I RCCGGY 3 cut(s) 509, 721, 821
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 97
Csp6I GTAC 3 cut(s) 179, 291, 441
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 5 cut(s) 92, 347, 375, 419, 488
CviQI GTAC 3 cut(s) 179, 291, 441
DdeI CTNAG 5 cut(s) 195, 306, 540, 576, 894
DpnI GATC 2 cut(s) 115, 702
DpnII GATC 2 cut(s) 113, 700
DriI GACNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 683
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 3 cut(s) 109, 394, 506
Eco81I CCTNAGG 1 cut(s) 306
Eco91I GGTNACC 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 815
EcoO65I GGTNACC 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 581, 810
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 683
EcoT22I ATGCAT 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 683
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 5 cut(s) 95, 350, 378, 422, 491
FaiI YATR 9 cut(s) 93, 183, 348, 364, 366, 376, 420, 489, 554
FaqI GGGAC 2 cut(s) 181, 186
FatI CATG 5 cut(s) 91, 346, 374, 418, 487
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 1 cut(s) 693
GlaI GCGC 1 cut(s) 775
GluI GCNGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 833
HaeIII GGCC 3 cut(s) 494, 721, 821
HapII CCGG 5 cut(s) 248, 337, 510, 722, 822
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 776
Hin1II CATG 5 cut(s) 95, 350, 378, 422, 491
Hin6I GCGC 1 cut(s) 774
HinP1I GCGC 1 cut(s) 774
HincII GTYRAC 2 cut(s) 109, 733
HindII GTYRAC 2 cut(s) 109, 733
HinfI GANTC 5 cut(s) 74, 80, 464, 571, 578
HpaII CCGG 5 cut(s) 248, 337, 510, 722, 822
HphI GGTGA 4 cut(s) 163, 404, 484, 736
Hpy166II GTNNAC 6 cut(s) 109, 238, 291, 293, 597, 733
Hpy188I TCNGA 7 cut(s) 33, 79, 85, 188, 198, 413, 679
Hpy188III TCNNGA 4 cut(s) 248, 575, 839, 869
Hpy8I GTNNAC 6 cut(s) 109, 238, 291, 293, 597, 733
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 5 cut(s) 377, 505, 530, 721, 811
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4V TGCA 5 cut(s) 214, 368, 619, 797, 832
HpyF3I CTNAG 5 cut(s) 195, 306, 540, 576, 894
Hsp92II CATG 5 cut(s) 95, 350, 378, 422, 491
HspAI GCGC 1 cut(s) 774
Kpn2I TCCGGA 1 cut(s) 247
KpnI GGTACC 1 cut(s) 444
KroI GCCGGC 1 cut(s) 821
KroNI GCCGGC 1 cut(s) 823
Kzo9I GATC 2 cut(s) 113, 700
LweI GCATC 2 cut(s) 526, 778
MaeIII GTNAC 4 cut(s) 151, 320, 503, 662
MalI GATC 2 cut(s) 115, 702
MboI GATC 2 cut(s) 113, 700
MboII GAAGA 3 cut(s) 115, 278, 400
MluCI AATT 4 cut(s) 221, 514, 767, 842
MlyI GAGTC 2 cut(s) 473, 587
MnlI CCTC 5 cut(s) 244, 262, 315, 383, 583
Mph1103I ATGCAT 1 cut(s) 834
MroI TCCGGA 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 821
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 654, 907
MslI CAYNNNNRTG 1 cut(s) 896
MspI CCGG 5 cut(s) 248, 337, 510, 722, 822
MspR9I CCNGG 3 cut(s) 337, 583, 812
MvaI CCWGG 2 cut(s) 583, 812
NaeI GCCGGC 1 cut(s) 823
NciI CCSGG 1 cut(s) 337
NdeII GATC 2 cut(s) 113, 700
NgoMIV GCCGGC 1 cut(s) 821
NlaIII CATG 5 cut(s) 95, 350, 378, 422, 491
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 3 cut(s) 151, 503, 662
NsiI ATGCAT 1 cut(s) 834
NspI RCATGY 2 cut(s) 422, 491
NspV TTCGAA 1 cut(s) 144
PciI ACATGT 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 823
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 3 cut(s) 74, 80, 571
PkrI GCNGC 1 cut(s) 694
PleI GAGTC 2 cut(s) 472, 586
PpsI GAGTC 2 cut(s) 472, 586
PscI ACATGT 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 581, 810
PspEI GGTNACC 1 cut(s) 320
PspGI CCWGG 2 cut(s) 581, 810
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 271
RsaI GTAC 3 cut(s) 180, 292, 442
RsaNI GTAC 3 cut(s) 179, 291, 441
RseI CAYNNNNRTG 1 cut(s) 896
SalI GTCGAC 1 cut(s) 731
SaqAI TTAA 2 cut(s) 654, 907
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 2 cut(s) 113, 700
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 473, 587
ScrFI CCNGG 3 cut(s) 337, 583, 812
SfaNI GCATC 2 cut(s) 526, 778
SfuI TTCGAA 1 cut(s) 144
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 4 cut(s) 221, 514, 767, 842
SsiI CCGC 2 cut(s) 533, 693
StyD4I CCNGG 3 cut(s) 335, 581, 810
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 1 cut(s) 737
TaqI TCGA 3 cut(s) 116, 144, 732
TasI AATT 4 cut(s) 221, 514, 767, 842
TatI WGTACW 1 cut(s) 290
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 3 cut(s) 74, 80, 571
Tru1I TTAA 2 cut(s) 654, 907
Tru9I TTAA 2 cut(s) 654, 907
TscAI CASTG 4 cut(s) 604, 667, 790, 898
TseFI GTSAC 3 cut(s) 151, 503, 662
Tsp45I GTSAC 3 cut(s) 151, 503, 662
TspDTI ATGAA 2 cut(s) 273, 541
TspGWI ACGGA 3 cut(s) 126, 624, 819
TspRI CASTG 4 cut(s) 604, 667, 790, 898
VpaK11BI GGWCC 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 815
XapI RAATTY 3 cut(s) 221, 767, 842
XceI RCATGY 2 cut(s) 422, 491
XmiI GTMKAC 1 cut(s) 732
XmnI GAANNNNTTC 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.