pycom03g15270

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000217
Physical Location & Seq
Forward (+)
16592051 .. 16592830
780 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15270.1

Sequence Viewer

Length: 780 bp
ATGGAAAATTCTGGAGGCGAAGCCCTAACTGGATATCGGCAGACTCGGAGCTTCATGATAATGAGAACAACAAGGACATGTTGTTTTGGCCTGTCAAGCTTGACGGTAAGTTCTTGGCTCTCCGCAACTTGGGTAACAACTTTTTTCTGCAAGAGTCTCACCACGGAAGGGAAATCTAACTGTCTCAACACTGCCGTCCCCACCATTACCCAAGATGCACGCTTGGAACTGGAAGAAGTGGTTGTGTCGAGAAGCATCTACAATGTCAACTTTCACGTCTTGGATGCGAGGGTCTATAACTCAAGAGTCGTCACCATGGCCACCGGAGATGCCATTAACCGAACAAACGAACAAAACACCGTAGACATGAAGCTCTCGTACAAGGAGATCAGGAGCAGTACTTGGAACACAAGCGTGTCATTCAAGTCGGGCATCAAGACCACCGTGGAAACCGGGGTTCCTTTAATTGCACATGGACAAATCGAAGTGTCGGCCGAGTTTGGGCCAGAATTACAGTGGGGAATAACCAAGACATCGGAAAGTGAGGTGGAGACTGTGTGCGTGGTCATTGTGCCACCAATGACTACGGTGGAGGTGAATCTGGTAGCAACCATGGGTACGTGCAATGTCCCATTCTCCTACACTCAGCGCGACACATTTACTAATGGCGAACAGATTACCTACAGCATGGACGATGAGGTTTACACCGGTGTCAACCCCTACAACTTCAAATATGAGACCATATACAAGAAAGCCTGTGATGATCGATCTATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

260

Amino Acids

28.89

Weight (kDa)

5.1

Isoelectric Point (pI)

25.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 778
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 651
AciI CCGC 1 cut(s) 123
AcoI YGGCCR 2 cut(s) 318, 492
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 3 cut(s) 380, 400, 619
AfiI CCNNNNNNNGG 3 cut(s) 129, 168, 501
AflIII ACRYGT 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 707
AgsI TTSAA 2 cut(s) 424, 730
AjiI CACGTC 1 cut(s) 277
AleI CACNNNNGTG 1 cut(s) 413
AluBI AGCT 3 cut(s) 51, 99, 373
AluI AGCT 3 cut(s) 51, 99, 373
Alw26I GTCTC 4 cut(s) 161, 188, 545, 731
AoxI GGCC 4 cut(s) 88, 318, 492, 503
ApoI RAATTY 1 cut(s) 7
AsiGI ACCGGT 1 cut(s) 707
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 3 cut(s) 151, 304, 607
BalI TGGCCA 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BceAI ACGGC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 4 cut(s) 161, 188, 545, 731
BfmI CTRYAG 1 cut(s) 682
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 454
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 1 cut(s) 454
BmsI GCATC 5 cut(s) 205, 264, 274, 319, 441
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 454
Bsa29I ATCGAT 1 cut(s) 766
BsaAI YACGTR 1 cut(s) 621
BsaI GGTCTC 1 cut(s) 731
BsaJI CCNNGG 5 cut(s) 162, 315, 444, 453, 612
BsaWI WCCGGW 2 cut(s) 323, 707
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 168, 501
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 2 cut(s) 34, 234
Bse3DI GCAATG 1 cut(s) 631
BseCI ATCGAT 1 cut(s) 766
BseDI CCNNGG 5 cut(s) 162, 315, 444, 453, 612
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 129, 168, 501
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 2 cut(s) 34, 234
BseX3I CGGCCG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 651
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 4 cut(s) 90, 320, 494, 505
BshTI ACCGGT 1 cut(s) 707
BshVI ATCGAT 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 495
BsiSI CCGG 3 cut(s) 324, 453, 708
BslFI GGGAC 2 cut(s) 182, 614
BslI CCNNNNNNNGG 3 cut(s) 129, 168, 501
BsmAI GTCTC 4 cut(s) 161, 188, 545, 731
BsmFI GGGAC 2 cut(s) 182, 614
BsnI GGCC 4 cut(s) 90, 320, 494, 505
Bso31I GGTCTC 1 cut(s) 731
Bsp143I GATC 3 cut(s) 387, 763, 767
Bsp19I CCATGG 2 cut(s) 315, 612
BspACI CCGC 1 cut(s) 123
BspANI GGCC 4 cut(s) 90, 320, 494, 505
BspCNI CTCAG 1 cut(s) 658
BspDI ATCGAT 1 cut(s) 766
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 2 cut(s) 34, 234
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 5 cut(s) 162, 315, 444, 453, 612
BssMI GATC 3 cut(s) 387, 763, 767
BssT1I CCWWGG 2 cut(s) 315, 612
Bst4CI ACNGT 7 cut(s) 106, 182, 361, 445, 516, 556, 589
BstBAI YACGTR 1 cut(s) 621
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 645
BstDSI CCRYGG 4 cut(s) 162, 315, 444, 612
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 651
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 3 cut(s) 390, 766, 770
BstMAI GTCTC 4 cut(s) 161, 188, 545, 731
BstMBI GATC 3 cut(s) 387, 763, 767
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 682
BstUI CGCG 1 cut(s) 651
BstZI CGGCCG 1 cut(s) 492
Bsu15I ATCGAT 1 cut(s) 766
BsuRI GGCC 4 cut(s) 90, 320, 494, 505
BsuTUI ATCGAT 1 cut(s) 766
BtgI CCRYGG 4 cut(s) 162, 315, 444, 612
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 521
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 651
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 1 cut(s) 503
ClaI ATCGAT 1 cut(s) 766
Csp6I GTAC 3 cut(s) 379, 399, 618
CspAI ACCGGT 1 cut(s) 707
CviAII CATG 7 cut(s) 55, 78, 316, 367, 473, 613, 688
CviQI GTAC 3 cut(s) 379, 399, 618
DdeI CTNAG 1 cut(s) 645
DpnI GATC 3 cut(s) 389, 765, 769
DpnII GATC 3 cut(s) 387, 763, 767
EaeI YGGCCR 2 cut(s) 318, 492
EagI CGGCCG 1 cut(s) 492
EclXI CGGCCG 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 315, 612
Eco31I GGTCTC 1 cut(s) 731
Eco32I GATATC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 492
EcoRV GATATC 1 cut(s) 35
EcoT14I CCWWGG 2 cut(s) 315, 612
ErhI CCWWGG 2 cut(s) 315, 612
FaeI CATG 7 cut(s) 58, 81, 319, 370, 476, 616, 691
FaqI GGGAC 2 cut(s) 182, 614
FatI CATG 7 cut(s) 54, 77, 315, 366, 472, 612, 687
FblI GTMKAC 1 cut(s) 363
FokI GGATG 1 cut(s) 296
GlaI GCGC 1 cut(s) 650
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 4 cut(s) 90, 320, 494, 505
HapII CCGG 3 cut(s) 324, 453, 708
HhaI GCGC 1 cut(s) 651
Hin1II CATG 7 cut(s) 58, 81, 319, 370, 476, 616, 691
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 2 cut(s) 268, 715
HindII GTYRAC 2 cut(s) 268, 715
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 4 cut(s) 43, 154, 306, 598
HpaII CCGG 3 cut(s) 324, 453, 708
HphI GGTGA 3 cut(s) 151, 304, 607
Hpy166II GTNNAC 4 cut(s) 268, 364, 703, 715
Hpy188I TCNGA 2 cut(s) 48, 538
Hpy188III TCNNGA 6 cut(s) 12, 55, 249, 303, 391, 436
Hpy8I GTNNAC 4 cut(s) 268, 364, 703, 715
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 7 cut(s) 106, 182, 361, 445, 516, 556, 589
HpyCH4IV ACGT 2 cut(s) 276, 620
HpyCH4V TGCA 4 cut(s) 150, 218, 470, 624
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 2 cut(s) 276, 620
Hsp92II CATG 7 cut(s) 58, 81, 319, 370, 476, 616, 691
HspAI GCGC 1 cut(s) 649
Kzo9I GATC 3 cut(s) 387, 763, 767
LmnI GCTCC 2 cut(s) 48, 393
LweI GCATC 5 cut(s) 205, 264, 274, 319, 441
MaeII ACGT 2 cut(s) 276, 620
MaeIII GTNAC 2 cut(s) 133, 310
MalI GATC 3 cut(s) 389, 765, 769
MboI GATC 3 cut(s) 387, 763, 767
MboII GAAGA 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 3 cut(s) 7, 465, 509
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 3 cut(s) 37, 163, 315
MnlI CCTC 5 cut(s) 8, 282, 538, 586, 691
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
MseI TTAA 2 cut(s) 336, 464
MslI CAYNNNNRTG 2 cut(s) 59, 413
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 3 cut(s) 324, 453, 708
MspR9I CCNGG 1 cut(s) 454
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 2 cut(s) 315, 612
NdeII GATC 3 cut(s) 387, 763, 767
NlaIII CATG 7 cut(s) 58, 81, 319, 370, 476, 616, 691
NlaIV GGNNCC 1 cut(s) 459
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 81
OliI CACNNNNGTG 1 cut(s) 413
PagI TCATGA 1 cut(s) 54
PciI ACATGT 1 cut(s) 77
PfeI GAWTC 1 cut(s) 598
PinAI ACCGGT 1 cut(s) 707
PleI GAGTC 3 cut(s) 37, 162, 314
PpsI GAGTC 3 cut(s) 37, 162, 314
Ppu21I YACGTR 1 cut(s) 621
PscI ACATGT 1 cut(s) 77
PsiI TTATAA 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 1 cut(s) 503
RsaI GTAC 3 cut(s) 380, 400, 619
RsaNI GTAC 3 cut(s) 379, 399, 618
RseI CAYNNNNRTG 2 cut(s) 59, 413
SaqAI TTAA 2 cut(s) 336, 464
Sau3AI GATC 3 cut(s) 387, 763, 767
Sau96I GGNCC 1 cut(s) 503
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 3 cut(s) 37, 163, 315
ScrFI CCNGG 1 cut(s) 454
SetI ASST 9 cut(s) 53, 101, 279, 375, 549, 597, 623, 683, 702
SfaNI GCATC 5 cut(s) 205, 264, 274, 319, 441
SfcI CTRYAG 1 cut(s) 682
SgrAI CRCCGGYG 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 59, 413
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 3 cut(s) 7, 465, 509
SsiI CCGC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 452
StyI CCWWGG 2 cut(s) 315, 612
TaaI ACNGT 7 cut(s) 106, 182, 361, 445, 516, 556, 589
TaiI ACGT 2 cut(s) 279, 623
TaqI TCGA 3 cut(s) 248, 483, 766
TasI AATT 3 cut(s) 7, 465, 509
TatI WGTACW 1 cut(s) 398
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 2 cut(s) 336, 464
Tru9I TTAA 2 cut(s) 336, 464
TscAI CASTG 2 cut(s) 196, 521
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 43, 383
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 196, 521
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.