pycom10g01820

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000217
Physical Location & Seq
Forward (+)
1901354 .. 1901851
498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01820.1

Sequence Viewer

Length: 498 bp
ATGGCTCCACCTGTACTACCAAGCCCCTTTCTTTTGAAAGCAGATATCAACAACAAATACTTGCGCTATCAACTTGATGCAGAAAGCGACCTCAATGAGATTGTCCAGTTTTCTGAGGACAATGAAAACAGCCGGTTCATAAAGTTCACCACTGAGAAGCCAAACAATGAGGACTACGCCGACAAGAATTACGTGCATATCAAATGCTCCTATAATGGCAACTACTTGAGAAGGGTGGACCAAAACAGGCTATTGGTCCTGGCCGCGGCTACTGACCGAAATGAAACCAAAGACAATTGGGCTTGCACATTGTTCAAAATCGAGCCTGTCGGGCCACCTGACAACAACAACCTAATCACGCGCTGCCGATTACGCCACTTGCAAAGTGACCTCTTAACCAGGCCATTCATTGAAAATAGATTTGAATTACGCCTCAGCCAAAAAACACCTGACGCTGGAGGGGTGGATATCTACTCCGTCTCCCAAATTAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

166

Amino Acids

19.13

Weight (kDa)

6.14

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 6 - 135 1.3e-15 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 266, 361
AciI CCGC 2 cut(s) 264, 266
AcoI YGGCCR 1 cut(s) 261
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 265, 455
AgsI TTSAA 4 cut(s) 37, 316, 413, 425
AjnI CCWGG 2 cut(s) 258, 398
Alw26I GTCTC 1 cut(s) 484
AoxI GGCC 3 cut(s) 261, 332, 401
ApeKI GCWGC 1 cut(s) 363
AspLEI GCGC 2 cut(s) 66, 363
AspS9I GGNCC 3 cut(s) 238, 256, 332
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 238, 256
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 350
BciT130I CCWGG 2 cut(s) 260, 400
BcoDI GTCTC 1 cut(s) 484
BglI GCCNNNNNGGC 1 cut(s) 331
BisI GCNGC 3 cut(s) 264, 267, 364
BlsI GCNGC 3 cut(s) 265, 268, 365
Bme1390I CCNGG 2 cut(s) 260, 400
Bme18I GGWCC 2 cut(s) 238, 256
BmgT120I GGNCC 3 cut(s) 238, 256, 332
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 260, 400
BmsI GCATC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 455
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 260, 400
BseDI CCNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 265, 455
BseMII CTCAG 3 cut(s) 105, 144, 448
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 350
Bsh1236I CGCG 2 cut(s) 266, 361
BshFI GGCC 3 cut(s) 263, 334, 403
BsiSI CCGG 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 265, 455
BsmAI GTCTC 1 cut(s) 484
BsmBI CGTCTC 1 cut(s) 484
BsnI GGCC 3 cut(s) 263, 334, 403
BspACI CCGC 2 cut(s) 264, 266
BspANI GGCC 3 cut(s) 263, 334, 403
BspCNI CTCAG 3 cut(s) 106, 145, 447
BspFNI CGCG 2 cut(s) 266, 361
BspLI GGNNCC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 260, 400
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 3 cut(s) 114, 153, 434
BstDSI CCRYGG 1 cut(s) 264
BstFNI CGCG 2 cut(s) 266, 361
BstHHI GCGC 2 cut(s) 66, 363
BstMAI GTCTC 1 cut(s) 484
BstMWI GCNNNNNNNGC 2 cut(s) 331, 372
BstNI CCWGG 2 cut(s) 260, 400
BstSCI CCNGG 2 cut(s) 258, 398
BstUI CGCG 2 cut(s) 266, 361
BstV1I GCAGC 1 cut(s) 350
BsuRI GGCC 3 cut(s) 263, 334, 403
BtgI CCRYGG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 2 cut(s) 66, 363
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 238, 256, 332
Cfr42I CCGCGG 1 cut(s) 267
CseI GACGC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 14
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 3 cut(s) 114, 153, 434
EaeI YGGCCR 1 cut(s) 261
Eco32I GATATC 2 cut(s) 46, 469
Eco47I GGWCC 2 cut(s) 238, 256
EcoRII CCWGG 2 cut(s) 258, 398
EcoRV GATATC 2 cut(s) 46, 469
Esp3I CGTCTC 1 cut(s) 484
FaiI YATR 3 cut(s) 140, 198, 213
Fnu4HI GCNGC 3 cut(s) 264, 267, 364
Fsp4HI GCNGC 3 cut(s) 264, 267, 364
GlaI GCGC 2 cut(s) 65, 362
GluI GCNGC 3 cut(s) 264, 267, 364
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 3 cut(s) 263, 334, 403
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 461
HhaI GCGC 2 cut(s) 66, 363
Hin6I GCGC 2 cut(s) 64, 361
HinP1I GCGC 2 cut(s) 64, 361
HpaII CCGG 1 cut(s) 133
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 147, 238
Hpy188I TCNGA 1 cut(s) 115
Hpy8I GTNNAC 2 cut(s) 147, 238
HpyAV CCTTC 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 4 cut(s) 80, 196, 306, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 372
HpyF3I CTNAG 3 cut(s) 114, 153, 434
HpySE526I ACGT 1 cut(s) 192
HspAI GCGC 2 cut(s) 64, 361
KspI CCGCGG 1 cut(s) 267
LmnI GCTCC 2 cut(s) 10, 212
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 67
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 386
MfeI CAATTG 1 cut(s) 295
MluCI AATT 4 cut(s) 187, 295, 425, 486
MnlI CCTC 6 cut(s) 101, 109, 163, 401, 443, 452
MseI TTAA 2 cut(s) 395, 489
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 2 cut(s) 260, 400
MunI CAATTG 1 cut(s) 295
MvaI CCWGG 2 cut(s) 260, 400
MvnI CGCG 2 cut(s) 266, 361
MwoI GCNNNNNNNGC 2 cut(s) 331, 372
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 386
PkrI GCNGC 3 cut(s) 265, 268, 365
Ppu21I YACGTR 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 258, 398
PspGI CCWGG 2 cut(s) 258, 398
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 238, 256, 332
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SacII CCGCGG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 395, 489
SatI GCNGC 3 cut(s) 264, 267, 364
Sau96I GGNCC 3 cut(s) 238, 256, 332
ScrFI CCNGG 2 cut(s) 260, 400
SetI ASST 7 cut(s) 13, 93, 195, 340, 354, 393, 451
SfaNI GCATC 1 cut(s) 67
Sfr303I CCGCGG 1 cut(s) 267
SgrBI CCGCGG 1 cut(s) 267
SinI GGWCC 2 cut(s) 238, 256
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 4 cut(s) 187, 295, 425, 486
SsiI CCGC 2 cut(s) 264, 266
StyD4I CCNGG 2 cut(s) 258, 398
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 321
TaqII GACCGA 1 cut(s) 291
TasI AATT 4 cut(s) 187, 295, 425, 486
TatI WGTACW 1 cut(s) 13
TauI GCSGC 2 cut(s) 266, 269
Tru1I TTAA 2 cut(s) 395, 489
Tru9I TTAA 2 cut(s) 395, 489
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 4 cut(s) 127, 138, 297, 397
TspGWI ACGGA 1 cut(s) 466
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 238, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.