Rh1CG142500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000217
Physical Location & Seq
Reverse (-)
30862595 .. 30869795
7201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG142500.1

Sequence Viewer

Length: 297 bp
ATGGATAGGAAGAGAATATTAGTCCGTCTTCGCCATGTCCAACTTGGACACTACGTAGGCTTGCAGAGGGACAATGTCGACGCACAACACTTCATGGGAGGCTTATCCACTTCACCTGACAATGATACCAACAGCAGTATGGATGAGAATAATATTAGTACTAATGAACAAACTAACCGTACAGAGAATGACAATGATTTCATAAATGATGATGCTGACGTTATGGAGGATGATGAACCATCATCAAATAAAAATGAAGATATAGTTGGTAGTGAGGCAGATAGTGATTTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.07

Weight (kDa)

4.16

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AfaI GTAC 2 cut(s) 160, 181
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AsuHPI GGTGA 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 20
BccI CCATC 1 cut(s) 247
BmcAI AGTACT 1 cut(s) 160
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 55
BseGI GGATG 2 cut(s) 148, 235
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 62
BstF5I GGATG 2 cut(s) 148, 235
BstSNI TACGTA 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 148, 235
Cac8I GCNNGC 1 cut(s) 62
CseI GACGC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 159, 180
CviAII CATG 2 cut(s) 35, 94
CviJI RGCY 2 cut(s) 60, 102
CviKI_1 RGCY 2 cut(s) 60, 102
CviQI GTAC 2 cut(s) 159, 180
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco105I TACGTA 1 cut(s) 55
FaeI CATG 2 cut(s) 38, 97
FaiI YATR 6 cut(s) 36, 95, 140, 203, 224, 263
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 34, 93
FblI GTMKAC 1 cut(s) 78
FokI GGATG 2 cut(s) 155, 242
HgaI GACGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 38, 97
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 2 cut(s) 54, 219
HpyCH4V TGCA 1 cut(s) 64
HpySE526I ACGT 2 cut(s) 54, 219
Hsp92II CATG 2 cut(s) 38, 97
LpnPI CCDG 1 cut(s) 129
LweI GCATC 1 cut(s) 202
MaeII ACGT 2 cut(s) 54, 219
MboII GAAGA 3 cut(s) 20, 22, 269
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 4 cut(s) 60, 92, 220, 268
NlaIII CATG 2 cut(s) 38, 97
PflFI GACNNNGTC 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 2 cut(s) 160, 181
RsaNI GTAC 2 cut(s) 159, 180
SalI GTCGAC 1 cut(s) 77
ScaI AGTACT 1 cut(s) 160
SetI ASST 3 cut(s) 57, 118, 222
SfaNI GCATC 1 cut(s) 202
SgeI CNNG 5 cut(s) 47, 56, 73, 106, 128
SnaBI TACGTA 1 cut(s) 55
SspI AATATT 2 cut(s) 18, 154
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 2 cut(s) 57, 222
TaqI TCGA 1 cut(s) 78
TatI WGTACW 1 cut(s) 158
TspDTI ATGAA 5 cut(s) 82, 180, 190, 249, 270
TspGWI ACGGA 1 cut(s) 14
Tth111I GACNNNGTC 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 2 cut(s) 41, 136
XmiI GTMKAC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.