Rmu_co7975848.1_g000001

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7975848.1
OG0000217
Physical Location & Seq
Forward (+)
96 .. 511
416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7975848.1_g000001.1.cds

Sequence Viewer

Length: 416 bp
atgaagtgcattagagaacaagttgtgagtccacaggcaaagtttgaagtggagatggcaaagactgggaatggaatggtgcacataagatgctgctacaacaacaagtactgggtgacaaaccaggctgccagggatgatacagtttggatagttgcgtccgcggacaaaccagaggaagaccaatcaaaaagctcctgcaccttgttcaagcctaggtttgcagaaggccaaacacaagtccgatttatccacgtccaactccggatctccgtatccttgtggaagagtgctactacatccgagaatgccttatatctaggaggaagcggcgatgttttcgaagttgttgactgggaatcgctggtgatacttcccccacgggtggccttcaaatccttagaagatggcagtta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

138

Amino Acids

15.53

Weight (kDa)

6.11

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 164
AccIII TCCGGA 1 cut(s) 264
AciI CCGC 3 cut(s) 162, 164, 330
AclWI GGATC 1 cut(s) 275
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 3 cut(s) 47, 211, 394
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 123, 131
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
Alw21I GWGCWC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 264
AoxI GGCC 2 cut(s) 229, 387
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 93, 128
AspA2I CCTAGG 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 127, 379
AsuII TTCGAA 1 cut(s) 342
AvrII CCTAGG 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 80, 115
BccI CCATC 2 cut(s) 49, 401
BciT130I CCWGG 2 cut(s) 125, 133
BciVI GTATCC 1 cut(s) 286
BfaI CTAG 2 cut(s) 216, 320
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 3 cut(s) 94, 129, 331
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 3 cut(s) 95, 130, 332
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 125, 133
BmgBI CACGTC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 125, 133
BmrI ACTGGG 3 cut(s) 75, 121, 364
BmsI GCATC 1 cut(s) 80
BmuI ACTGGG 3 cut(s) 75, 121, 364
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 342
BsaJI CCNNGG 4 cut(s) 132, 162, 215, 380
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 3 cut(s) 70, 116, 359
BseAI TCCGGA 1 cut(s) 264
BseBI CCWGG 2 cut(s) 125, 133
BseDI CCNNGG 4 cut(s) 132, 162, 215, 380
BseGI GGATG 2 cut(s) 142, 299
BseLI CCNNNNNNNGG 1 cut(s) 385
BseNI ACTGG 3 cut(s) 70, 116, 359
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 80, 115
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 231, 389
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 385
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 231, 389
Bsp119I TTCGAA 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 264
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 3 cut(s) 162, 164, 330
BspANI GGCC 2 cut(s) 231, 389
BspEI TCCGGA 1 cut(s) 264
BspFNI CGCG 1 cut(s) 164
BspPI GGATC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 342
BsrI ACTGG 3 cut(s) 70, 116, 359
BssECI CCNNGG 4 cut(s) 132, 162, 215, 380
BssMI GATC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 125, 133
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 400
BstDSI CCRYGG 2 cut(s) 162, 380
BstF5I GGATG 2 cut(s) 142, 299
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstNI CCWGG 2 cut(s) 125, 133
BstSCI CCNGG 2 cut(s) 123, 131
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 80, 115
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 2 cut(s) 231, 389
BtgI CCRYGG 2 cut(s) 162, 380
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 142, 299
Cfr42I CCGCGG 1 cut(s) 165
CseI GACGC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 5 cut(s) 128, 195, 214, 231, 389
CviKI_1 RGCY 5 cut(s) 128, 195, 214, 231, 389
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 400
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 123, 131
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaiI YATR 2 cut(s) 86, 316
Fnu4HI GCNGC 3 cut(s) 94, 129, 331
FokI GGATG 2 cut(s) 149, 286
Fsp4HI GCNGC 3 cut(s) 94, 129, 331
FspBI CTAG 2 cut(s) 216, 320
GluI GCNGC 3 cut(s) 94, 129, 331
HaeIII GGCC 2 cut(s) 231, 389
HapII CCGG 1 cut(s) 265
HgaI GACGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 28, 359
HpaII CCGG 1 cut(s) 265
HphI GGTGA 2 cut(s) 127, 379
Hpy166II GTNNAC 3 cut(s) 32, 82, 352
Hpy188I TCNGA 2 cut(s) 245, 304
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 3 cut(s) 32, 82, 352
HpyAV CCTTC 2 cut(s) 221, 400
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 9, 82, 201, 224
HpyF3I CTNAG 1 cut(s) 400
HpySE526I ACGT 1 cut(s) 255
Kpn2I TCCGGA 1 cut(s) 264
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 2 cut(s) 80, 115
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 216, 320
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 3 cut(s) 191, 298, 416
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 84
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 2 cut(s) 169, 317
MroI TCCGGA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 125, 133
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 2 cut(s) 125, 133
MvnI CGCG 1 cut(s) 164
NdeII GATC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 115
NspV TTCGAA 1 cut(s) 342
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 3 cut(s) 95, 130, 332
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 123, 131
PspGI CCWGG 2 cut(s) 123, 131
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SacII CCGCGG 1 cut(s) 165
SatI GCNGC 3 cut(s) 94, 129, 331
Sau3AI GATC 1 cut(s) 267
ScaI AGTACT 1 cut(s) 110
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 2 cut(s) 125, 133
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 197, 206, 221, 258
SfaNI GCATC 1 cut(s) 80
Sfr303I CCGCGG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 342
SgrBI CCGCGG 1 cut(s) 165
SsiI CCGC 3 cut(s) 162, 164, 330
SspMI CTAG 2 cut(s) 216, 320
StyD4I CCNGG 2 cut(s) 123, 131
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 342
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 1 cut(s) 359
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 93, 128
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 262
VneI GTGCAC 1 cut(s) 80
XmaJI CCTAGG 1 cut(s) 215
XspI CTAG 2 cut(s) 216, 320
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.