FvH4_7g07020

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000217
Physical Location & Seq
Forward (+)
6992064 .. 6993845
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07020.t1

Sequence Viewer

Length: 1515 bp
ATGGCATGGCTTCCAAGACTTGTAGTGCTGAAATCCTCCTCGAACCACAAATGCCTGAGCTTAACAAAAGATATTCCACTCGTACCAGCAGGGTTCATGAGTTGCAATACAGAACAAGTTGTGAATCCAAAGGCCAAGTTTGAAGTGGAGAGGGCTAGTACTGGGACTGGATTGGTGCATATAAGATGCTGCTACAACAACAAGTACTGGGTGACATGCCAGACCTCCAGGGATAACATATGGATCGTTGCGTCGGCAGACAAGCCAGAGGAAGACCAATCAAAAAGCTCATGCACCTTGTTCGAGCCTAGGTTTGCAGTAGGCGAATCACAGGTCCTATTTTTCCACGTCGAACGCCGGAGGTTCACATCCTTGTGGAAGCGTGAGGGTACAGTGGAGCTTGCTTTGCACCTAGGAGCAGGCAGCGGCGATGTTTTCCAAGTTGTTGACTGGGAAACGCTGGTGATACTTCCGCCACGGGTGGCCTTCAAATCCTTTGAAGATGGCAAATACCTCTGTTCCCGCTGGATCGAAAAACACCCATATCAGAGGTTCGAGTCCAATTTGGATGTTGGAGATCCACTGGTGGCCAAGGAGTTGTTTGTCACTGCTAATGGAAGCCTTCGTATAAAGGACGGGCACTATGCCAAATTCTGGAGGCGTAGCCCTAACTGGATATGGGCTGATGCATCAACCGAAAACATGTCCGACGACACTTTGTTTTGGCCTGTCAGAATCCAAGACAATGTCATTGCTCTTCGCAACTTGGGCAACAACAATTTCTGCGGTGGACTCACCACCGAGTACAAAACCAACTGTCTCAACGCCGCCTACCGTAATATCTGTAAAGAGTCAAAGCTGGTGGTGGAAGAGCTTGTTCTTTCGAGGAACATCTACAATATCAATTTCCGACTCTCCGACTCCAGGATCTACAACGAGCAGGTCATAGAAATGGACACAGCTGTCGCAGTTAACAACAGCCCAAACAGAGACTCCACTATCAGCCTCAGCTTTGCAGAGAAAGACTCTAGGACACGTAGCTGGAATAGCAGTGTTTCATTGAAGTTGGGTGTTAACACAACTCTCCAAGTCAACTCTATTCCTCTGATTCTTGACGGAAAGATCGAACTCTCCGTTGAGTCTACAACAGCATACCAGTGGGGACAAACTACCACAGTTGAACAGACCAGGGAGGCCAATTATGCTGTTGTCGTGCCACCATTATCTAAGATGAAGGTGAGTCTCATAGCTTCAAGGGCTTCCTGCGATGTGCCTTTCTCCTACACTCAGCGTGACATTCTCACTGACGGCCGAACCGTTACCAAAACCATGGATGATGGTCTTTTCACTGGGATTAATGCCTACAAATTCGATTACCAAAACCAGGCATCCTTTATTGGTGGCCAGGTTATTCCCTCTGTCTCAAGTCCATGGAGGCTCCCGCGTGCTGTGTACTTTTGGGTGTGTGTGGTTCTAGTGTTCAGTGTGCTATTGCGTTTACTGCACTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

505

Amino Acids

57.14

Weight (kDa)

8.35

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 4 - 126 2.5e-18 Agglutinin domain
Agglutinin PF07468 158 - 290 1.1e-09 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 962
Acc36I ACCTGC 1 cut(s) 931
AccB7I CCANNNNNTGG 1 cut(s) 654
AccI GTMKAC 1 cut(s) 1142
AccII CGCG 1 cut(s) 1444
AciI CCGC 6 cut(s) 426, 473, 523, 786, 828, 1442
AclWI GGATC 4 cut(s) 251, 536, 572, 935
AcoI YGGCCR 3 cut(s) 588, 1309, 1402
AcsI RAATTY 2 cut(s) 650, 1367
AfaI GTAC 6 cut(s) 84, 160, 206, 391, 806, 1454
AfiI CCNNNNNNNGG 3 cut(s) 654, 924, 1384
AflIII ACRYGT 2 cut(s) 702, 1034
AgsI TTSAA 6 cut(s) 143, 490, 500, 1063, 1181, 1254
AjiI CACGTC 1 cut(s) 349
AjnI CCWGG 5 cut(s) 227, 923, 1187, 1383, 1404
AluBI AGCT 9 cut(s) 60, 288, 400, 859, 874, 962, 1011, 1041, 1250
AluI AGCT 9 cut(s) 60, 288, 400, 859, 874, 962, 1011, 1041, 1250
Alw26I GTCTC 4 cut(s) 824, 984, 1247, 1426
AlwI GGATC 4 cut(s) 251, 536, 572, 935
AoxI GGCC 7 cut(s) 132, 483, 588, 725, 1194, 1309, 1402
ApeKI GCWGC 2 cut(s) 189, 423
ApoI RAATTY 2 cut(s) 650, 1367
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AseI ATTAAT 1 cut(s) 1356
AspA2I CCTAGG 2 cut(s) 308, 412
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 4 cut(s) 223, 475, 787, 1249
AvaII GGWCC 1 cut(s) 334
AvrII CCTAGG 2 cut(s) 308, 412
BaeGI GKGCMC 1 cut(s) 642
BalI TGGCCA 2 cut(s) 590, 1404
BbsI GAAGAC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 1007
BbvI GCAGC 2 cut(s) 176, 435
BccI CCATC 2 cut(s) 497, 1331
BceAI ACGGC 1 cut(s) 1324
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 5 cut(s) 229, 925, 1189, 1385, 1406
BcoDI GTCTC 4 cut(s) 824, 984, 1247, 1426
BfaI CTAG 5 cut(s) 156, 309, 413, 1029, 1475
BfuAI ACCTGC 1 cut(s) 931
BisI GCNGC 4 cut(s) 190, 424, 427, 828
BlnI CCTAGG 2 cut(s) 308, 412
BlsI GCNGC 4 cut(s) 191, 425, 428, 829
BmcAI AGTACT 2 cut(s) 160, 206
Bme1390I CCNGG 5 cut(s) 229, 925, 1189, 1385, 1406
Bme18I GGWCC 1 cut(s) 334
BmgBI CACGTC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 1439
BmrFI CCNGG 5 cut(s) 229, 925, 1189, 1385, 1406
BmrI ACTGGG 4 cut(s) 171, 217, 460, 1359
BmsI GCATC 4 cut(s) 176, 676, 698, 1397
BmuI ACTGGG 4 cut(s) 171, 217, 460, 1359
BpiI GAAGAC 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 1010, 1042
BpmI CTGGAG 3 cut(s) 211, 676, 907
Bpu10I CCTNAGC 2 cut(s) 56, 1007
BpuEI CTTGAG 1 cut(s) 1408
BsaAI YACGTR 1 cut(s) 1037
BsaJI CCNNGG 8 cut(s) 228, 308, 412, 476, 591, 1188, 1329, 1430
BsaXI ACNNNNNCTCC 2 cut(s) 977, 1007
Bsc4I CCNNNNNNNGG 3 cut(s) 654, 924, 1384
Bse1I ACTGG 8 cut(s) 166, 172, 212, 455, 588, 677, 1156, 1354
Bse3DI GCAATG 1 cut(s) 750
BseBI CCWGG 5 cut(s) 229, 925, 1189, 1385, 1406
BseDI CCNNGG 8 cut(s) 228, 308, 412, 476, 591, 1188, 1329, 1430
BseGI GGATG 4 cut(s) 368, 574, 1339, 1388
BseLI CCNNNNNNNGG 3 cut(s) 654, 924, 1384
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 3 cut(s) 47, 1021, 1301
BseNI ACTGG 8 cut(s) 166, 172, 212, 455, 588, 677, 1156, 1354
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 642
BseX3I CGGCCG 1 cut(s) 1309
BseXI GCAGC 2 cut(s) 176, 435
BsgI GTGCAG 1 cut(s) 1487
Bsh1236I CGCG 1 cut(s) 1444
Bsh1285I CGRYCG 1 cut(s) 1312
BshFI GGCC 7 cut(s) 134, 485, 590, 727, 1196, 1311, 1404
BsiEI CGRYCG 1 cut(s) 1312
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 2 cut(s) 178, 1176
BslI CCNNNNNNNGG 3 cut(s) 654, 924, 1384
BsmAI GTCTC 4 cut(s) 824, 984, 1247, 1426
BsmFI GGGAC 2 cut(s) 178, 1176
BsnI GGCC 7 cut(s) 134, 485, 590, 727, 1196, 1311, 1404
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 5 cut(s) 243, 528, 577, 927, 1122
Bsp19I CCATGG 2 cut(s) 1329, 1430
BspACI CCGC 6 cut(s) 426, 473, 523, 786, 828, 1442
BspANI GGCC 7 cut(s) 134, 485, 590, 727, 1196, 1311, 1404
BspCNI CTCAG 3 cut(s) 48, 1020, 1300
BspFNI CGCG 1 cut(s) 1444
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 1439
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 4 cut(s) 251, 536, 572, 935
BspQI GCTCTTC 2 cut(s) 762, 864
BsrDI GCAATG 1 cut(s) 750
BsrI ACTGG 8 cut(s) 166, 172, 212, 455, 588, 677, 1156, 1354
BssECI CCNNGG 8 cut(s) 228, 308, 412, 476, 591, 1188, 1329, 1430
BssMI GATC 5 cut(s) 243, 528, 577, 927, 1122
BssT1I CCWWGG 5 cut(s) 308, 412, 591, 1329, 1430
Bst2UI CCWGG 5 cut(s) 229, 925, 1189, 1385, 1406
Bst4CI ACNGT 5 cut(s) 394, 818, 836, 1177, 1318
Bst6I CTCTTC 2 cut(s) 762, 864
BstBAI YACGTR 1 cut(s) 1037
BstC8I GCNNGC 3 cut(s) 402, 421, 1446
BstDEI CTNAG 4 cut(s) 56, 1007, 1227, 1287
BstDSI CCRYGG 3 cut(s) 476, 1329, 1430
BstF5I GGATG 4 cut(s) 368, 574, 1339, 1388
BstFNI CGCG 1 cut(s) 1444
BstKTI GATC 5 cut(s) 246, 531, 580, 930, 1125
BstMAI GTCTC 4 cut(s) 824, 984, 1247, 1426
BstMBI GATC 5 cut(s) 243, 528, 577, 927, 1122
BstMCI CGRYCG 1 cut(s) 1312
BstMWI GCNNNNNNNGC 6 cut(s) 406, 768, 1047, 1202, 1256, 1501
BstNI CCWGG 5 cut(s) 229, 925, 1189, 1385, 1406
BstNSI RCATGY 2 cut(s) 219, 706
BstSCI CCNGG 5 cut(s) 227, 923, 1187, 1383, 1404
BstSLI GKGCMC 1 cut(s) 642
BstUI CGCG 1 cut(s) 1444
BstV1I GCAGC 2 cut(s) 176, 435
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 577, 927
BstXI CCANNNNNNTGG 1 cut(s) 1330
BstYI RGATCY 2 cut(s) 577, 927
BstZI CGGCCG 1 cut(s) 1309
BsuRI GGCC 7 cut(s) 134, 485, 590, 727, 1196, 1311, 1404
BtgI CCRYGG 3 cut(s) 476, 1329, 1430
BtgZI GCGATG 2 cut(s) 444, 1281
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 4 cut(s) 368, 574, 1339, 1388
BtsI GCAGTG 2 cut(s) 606, 1057
BtsIMutI CAGTG 8 cut(s) 399, 581, 606, 1057, 1163, 1302, 1347, 1489
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 3 cut(s) 402, 421, 1446
CciI TCATGA 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 1 cut(s) 240
Csp6I GTAC 6 cut(s) 83, 159, 205, 390, 805, 1453
CspCI CAANNNNNGTGG 2 cut(s) 843, 878
CviAII CATG 8 cut(s) 6, 97, 216, 291, 703, 1330, 1431, 1510
CviQI GTAC 6 cut(s) 83, 159, 205, 390, 805, 1453
DdeI CTNAG 4 cut(s) 56, 1007, 1227, 1287
DpnI GATC 5 cut(s) 245, 530, 579, 929, 1124
DpnII GATC 5 cut(s) 243, 528, 577, 927, 1122
DrdI GACNNNNNNGTC 1 cut(s) 962
DseDI GACNNNNNNGTC 1 cut(s) 962
EaeI YGGCCR 3 cut(s) 588, 1309, 1402
EagI CGGCCG 1 cut(s) 1309
Eam1104I CTCTTC 2 cut(s) 762, 864
EarI CTCTTC 2 cut(s) 762, 864
EciI GGCGGA 1 cut(s) 462
EclXI CGGCCG 1 cut(s) 1309
Eco130I CCWWGG 5 cut(s) 308, 412, 591, 1329, 1430
Eco47I GGWCC 1 cut(s) 334
Eco52I CGGCCG 1 cut(s) 1309
EcoO109I RGGNCCY 1 cut(s) 334
EcoRII CCWGG 5 cut(s) 227, 923, 1187, 1383, 1404
EcoT14I CCWWGG 5 cut(s) 308, 412, 591, 1329, 1430
EcoT22I ATGCAT 1 cut(s) 691
ErhI CCWWGG 5 cut(s) 308, 412, 591, 1329, 1430
FaeI CATG 8 cut(s) 9, 100, 219, 294, 706, 1333, 1434, 1513
FaqI GGGAC 2 cut(s) 178, 1176
FatI CATG 8 cut(s) 5, 96, 215, 290, 702, 1329, 1430, 1509
FauI CCCGC 2 cut(s) 530, 1449
FauNDI CATATG 1 cut(s) 239
FblI GTMKAC 1 cut(s) 1142
Fnu4HI GCNGC 4 cut(s) 190, 424, 427, 828
FokI GGATG 4 cut(s) 355, 581, 1346, 1375
Fsp4HI GCNGC 4 cut(s) 190, 424, 427, 828
FspBI CTAG 5 cut(s) 156, 309, 413, 1029, 1475
GluI GCNGC 4 cut(s) 190, 424, 427, 828
GsuI CTGGAG 3 cut(s) 211, 676, 907
HaeIII GGCC 7 cut(s) 134, 485, 590, 727, 1196, 1311, 1404
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 240
Hin1II CATG 8 cut(s) 9, 100, 219, 294, 706, 1333, 1434, 1513
HincII GTYRAC 4 cut(s) 448, 973, 1075, 1093
HindII GTYRAC 4 cut(s) 448, 973, 1075, 1093
HpaI GTTAAC 2 cut(s) 973, 1075
HpaII CCGG 1 cut(s) 358
HphI GGTGA 4 cut(s) 223, 475, 787, 1249
Hpy166II GTNNAC 9 cut(s) 366, 448, 791, 973, 1075, 1093, 1143, 1453, 1499
Hpy188I TCNGA 6 cut(s) 549, 709, 734, 911, 919, 1107
Hpy188III TCNNGA 3 cut(s) 97, 655, 1112
Hpy8I GTNNAC 9 cut(s) 366, 448, 791, 973, 1075, 1093, 1143, 1453, 1499
Hpy99I CGWCG 3 cut(s) 256, 353, 713
HpyAV CCTTC 3 cut(s) 496, 632, 1228
HpyCH4III ACNGT 5 cut(s) 394, 818, 836, 1177, 1318
HpyCH4IV ACGT 2 cut(s) 348, 1036
HpyCH4V TGCA 8 cut(s) 105, 178, 294, 317, 409, 689, 1016, 1504
HpyF10VI GCNNNNNNNGC 6 cut(s) 406, 768, 1047, 1202, 1256, 1501
HpyF3I CTNAG 4 cut(s) 56, 1007, 1227, 1287
HpySE526I ACGT 2 cut(s) 348, 1036
Hsp92II CATG 8 cut(s) 9, 100, 219, 294, 706, 1333, 1434, 1513
KspAI GTTAAC 2 cut(s) 973, 1075
Kzo9I GATC 5 cut(s) 243, 528, 577, 927, 1122
LguI GCTCTTC 2 cut(s) 762, 864
LmnI GCTCC 3 cut(s) 397, 416, 1443
Lsp1109I GCAGC 2 cut(s) 176, 435
LweI GCATC 4 cut(s) 176, 676, 698, 1397
MaeI CTAG 5 cut(s) 156, 309, 413, 1029, 1475
MaeII ACGT 2 cut(s) 348, 1036
MaeIII GTNAC 4 cut(s) 211, 604, 1292, 1318
MalI GATC 5 cut(s) 245, 530, 579, 929, 1124
MboI GATC 5 cut(s) 243, 528, 577, 927, 1122
MboII GAAGA 4 cut(s) 284, 512, 749, 881
MflI RGATCY 2 cut(s) 577, 927
MhlI GDGCHC 1 cut(s) 642
MlsI TGGCCA 2 cut(s) 590, 1404
MluCI AATT 6 cut(s) 562, 650, 778, 904, 1198, 1367
MluNI TGGCCA 2 cut(s) 590, 1404
MlyI GAGTC 9 cut(s) 566, 786, 860, 906, 914, 986, 1019, 1148, 1249
MmeI TCCRAC 4 cut(s) 553, 732, 934, 942
Mox20I TGGCCA 2 cut(s) 590, 1404
Mph1103I ATGCAT 1 cut(s) 691
MscI TGGCCA 2 cut(s) 590, 1404
MseI TTAA 4 cut(s) 62, 972, 1074, 1356
MslI CAYNNNNRTG 3 cut(s) 373, 950, 1156
Msp20I TGGCCA 2 cut(s) 590, 1404
MspA1I CMGCKG 3 cut(s) 426, 525, 962
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 5 cut(s) 229, 925, 1189, 1385, 1406
MvaI CCWGG 5 cut(s) 229, 925, 1189, 1385, 1406
MvnI CGCG 1 cut(s) 1444
MwoI GCNNNNNNNGC 6 cut(s) 406, 768, 1047, 1202, 1256, 1501
NcoI CCATGG 2 cut(s) 1329, 1430
NdeI CATATG 1 cut(s) 239
NdeII GATC 5 cut(s) 243, 528, 577, 927, 1122
NlaIII CATG 8 cut(s) 9, 100, 219, 294, 706, 1333, 1434, 1513
NlaIV GGNNCC 1 cut(s) 1439
NmuCI GTSAC 3 cut(s) 211, 604, 1292
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 2 cut(s) 219, 706
PagI TCATGA 1 cut(s) 96
PciI ACATGT 1 cut(s) 702
PciSI GCTCTTC 2 cut(s) 762, 864
PcsI WCGNNNNNNNCGW 3 cut(s) 1122, 1131, 1314
PfeI GAWTC 4 cut(s) 124, 326, 735, 1108
PflFI GACNNNGTC 1 cut(s) 746
PflMI CCANNNNNTGG 1 cut(s) 654
PfoI TCCNGGA 1 cut(s) 923
PkrI GCNGC 4 cut(s) 191, 425, 428, 829
PleI GAGTC 9 cut(s) 565, 786, 859, 906, 914, 986, 1019, 1147, 1248
PpsI GAGTC 9 cut(s) 565, 786, 859, 906, 914, 986, 1019, 1147, 1248
Ppu21I YACGTR 1 cut(s) 1037
PpuMI RGGWCCY 1 cut(s) 334
PscI ACATGT 1 cut(s) 702
PshBI ATTAAT 1 cut(s) 1356
Psp5II RGGWCCY 1 cut(s) 334
Psp6I CCWGG 5 cut(s) 227, 923, 1187, 1383, 1404
PspGI CCWGG 5 cut(s) 227, 923, 1187, 1383, 1404
PspN4I GGNNCC 1 cut(s) 1439
PspPI GGNCC 1 cut(s) 334
PspPPI RGGWCCY 1 cut(s) 334
PsuI RGATCY 2 cut(s) 577, 927
PsyI GACNNNGTC 1 cut(s) 746
PvuII CAGCTG 1 cut(s) 962
RsaI GTAC 6 cut(s) 84, 160, 206, 391, 806, 1454
RsaNI GTAC 6 cut(s) 83, 159, 205, 390, 805, 1453
RseI CAYNNNNRTG 3 cut(s) 373, 950, 1156
SapI GCTCTTC 2 cut(s) 762, 864
SaqAI TTAA 4 cut(s) 62, 972, 1074, 1356
SatI GCNGC 4 cut(s) 190, 424, 427, 828
Sau3AI GATC 5 cut(s) 243, 528, 577, 927, 1122
Sau96I GGNCC 1 cut(s) 334
ScaI AGTACT 2 cut(s) 160, 206
SchI GAGTC 9 cut(s) 566, 786, 860, 906, 914, 986, 1019, 1148, 1249
ScrFI CCNGG 5 cut(s) 229, 925, 1189, 1385, 1406
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 4 cut(s) 176, 676, 698, 1397
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 3 cut(s) 373, 950, 1156
SmlI CTYRAG 1 cut(s) 1423
SmoI CTYRAG 1 cut(s) 1423
Sse9I AATT 6 cut(s) 562, 650, 778, 904, 1198, 1367
SsiI CCGC 6 cut(s) 426, 473, 523, 786, 828, 1442
SspMI CTAG 5 cut(s) 156, 309, 413, 1029, 1475
StyD4I CCNGG 5 cut(s) 227, 923, 1187, 1383, 1404
StyI CCWWGG 5 cut(s) 308, 412, 591, 1329, 1430
TaaI ACNGT 5 cut(s) 394, 818, 836, 1177, 1318
TaiI ACGT 2 cut(s) 351, 1039
TaqI TCGA 8 cut(s) 41, 303, 351, 531, 555, 884, 1125, 1371
TasI AATT 6 cut(s) 562, 650, 778, 904, 1198, 1367
TatI WGTACW 4 cut(s) 158, 204, 804, 1452
TauI GCSGC 2 cut(s) 429, 830
TfiI GAWTC 4 cut(s) 124, 326, 735, 1108
Tru1I TTAA 4 cut(s) 62, 972, 1074, 1356
Tru9I TTAA 4 cut(s) 62, 972, 1074, 1356
TscAI CASTG 8 cut(s) 399, 588, 613, 1057, 1163, 1309, 1354, 1489
TseFI GTSAC 3 cut(s) 211, 604, 1292
TseI GCWGC 2 cut(s) 189, 423
Tsp45I GTSAC 3 cut(s) 211, 604, 1292
TspDTI ATGAA 4 cut(s) 85, 1047, 1247, 1498
TspGWI ACGGA 2 cut(s) 1123, 1131
TspRI CASTG 8 cut(s) 399, 588, 613, 1057, 1163, 1309, 1354, 1489
Tth111I GACNNNGTC 1 cut(s) 746
Van91I CCANNNNNTGG 1 cut(s) 654
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 1356
XapI RAATTY 2 cut(s) 650, 1367
XceI RCATGY 2 cut(s) 219, 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmaJI CCTAGG 2 cut(s) 308, 412
XmiI GTMKAC 1 cut(s) 1142
XspI CTAG 5 cut(s) 156, 309, 413, 1029, 1475
ZrmI AGTACT 2 cut(s) 160, 206
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.