Rorug05G0268200

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000217
Physical Location & Seq
Forward (+)
30305228 .. 30309479
4252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0268200.1

Sequence Viewer

Length: 1176 bp
ATGGATTCCGAAGCAGAGGCTCTTGAGGAGAAGTTGATGTCTTTGCTCGGTCAGCTCCGAGCTGAGTGTGCCATTTTTGAAAGAGTGGTCTACAAGAACAAGAATCAGCATAGACGTTCCTCTTACTTCCAGTACCTAATCAAGGTAAGGAGGGATTTGAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGCTGCTGTTTCCAAAGTATCACTGGAAAGAGACCCAAGCAAAAGATGCATCTATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAGCTGCACGTCTTCTATCGCAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTACATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTTTCCCAAAAGAAGCAGTCAGTTAAAATAAATCAAGAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTCTGGAATGCGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACATAAGAGCCAGATTGCAAGTCCGGGTGTGGATATTTCTTTAGGGACATCATCTGTGCTTTATCGAAGTATTGAGTCTTCCCTTGGAGATGACGAAATCATGTCTGAGAGGCCAGATGAAAGCCATACTGTTGAGCTTGATCAAGTTCAGGTCATGGAGAACAACATTAATCTATTGTCTGGTCCATCCAATGGTGATGATGTAAAGCTGGTTGAACCTTGTGGGGAGGGTTCAAACATGGAAGACACTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGCCACAAGTCTCTTCAAGTTCAGAGGCATCAAAACTGAAGTCTGGACCGGTTAAAGTGGCATTCATACAAATTAAAAAACCCATAACATCATCTGCAAATACATCTGGACTCCATTCTAGAGAAACTGACATCATTAACCATAATAAGGAAGATCCATTGTTCAGCTTGCTTTCTAGTGCCAATGCCATCTGCTGTATTGCGGATTTGCGGCTAAACTACATATTAGGCCAGCCTAACACAGCCATGCGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

391

Amino Acids

43.93

Weight (kDa)

7.0

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 7 - 163 7.3e-14 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 830
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 1121, 1129
AclWI GGATC 1 cut(s) 1067
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 2 cut(s) 538, 977
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 142, 830, 1066
AgeI ACCGGT 1 cut(s) 967
AgsI TTSAA 9 cut(s) 80, 262, 344, 355, 455, 487, 854, 873, 936
AjiI CACGTC 1 cut(s) 323
AluBI AGCT 8 cut(s) 55, 62, 317, 425, 775, 847, 901, 1086
AluI AGCT 8 cut(s) 55, 62, 317, 425, 775, 847, 901, 1086
Alw26I GTCTC 2 cut(s) 220, 934
AlwI GGATC 1 cut(s) 1067
AlwNI CAGNNNCTG 1 cut(s) 463
AoxI GGCC 2 cut(s) 749, 1147
ApeKI GCWGC 3 cut(s) 198, 317, 359
ApoI RAATTY 1 cut(s) 617
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AseI ATTAAT 1 cut(s) 807
AsiGI ACCGGT 1 cut(s) 967
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 821, 965
AsuC2I CCSGG 1 cut(s) 663
AsuHPI GGTGA 1 cut(s) 845
AvaII GGWCC 2 cut(s) 821, 965
BarI GAAGNNNNNNTAC 2 cut(s) 700, 732
BbsI GAAGAC 4 cut(s) 317, 544, 708, 888
BbvI GCAGC 3 cut(s) 185, 304, 346
BccI CCATC 3 cut(s) 331, 832, 1115
BclI TGATCA 1 cut(s) 778
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 2 cut(s) 220, 934
BfaI CTAG 3 cut(s) 891, 1038, 1095
BisI GCNGC 4 cut(s) 199, 318, 360, 1130
BlsI GCNGC 4 cut(s) 200, 319, 361, 1131
Bme1390I CCNGG 1 cut(s) 663
Bme18I GGWCC 2 cut(s) 821, 965
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 821, 965
BmrFI CCNGG 1 cut(s) 663
BmsI GCATC 3 cut(s) 231, 253, 956
BpiI GAAGAC 4 cut(s) 317, 544, 708, 888
BpuEI CTTGAG 2 cut(s) 44, 650
BpuMI CCSGG 1 cut(s) 663
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 721
BsaWI WCCGGW 1 cut(s) 967
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 830, 1066
Bse118I RCCGGY 1 cut(s) 967
Bse1I ACTGG 2 cut(s) 130, 223
Bse3DI GCAATG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 1 cut(s) 824
BseLI CCNNNNNNNGG 3 cut(s) 142, 830, 1066
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 54, 735
BseNI ACTGG 2 cut(s) 130, 223
BseRI GAGGAG 2 cut(s) 41, 200
BseXI GCAGC 3 cut(s) 185, 304, 346
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 2 cut(s) 751, 1149
BshTI ACCGGT 1 cut(s) 967
BsiSI CCGG 2 cut(s) 662, 968
BslFI GGGAC 1 cut(s) 697
BslI CCNNNNNNNGG 3 cut(s) 142, 830, 1066
BsmAI GTCTC 2 cut(s) 220, 934
BsmFI GGGAC 1 cut(s) 697
BsmI GAATGC 2 cut(s) 602, 980
BsnI GGCC 2 cut(s) 751, 1149
Bso31I GGTCTC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 389, 778, 1072
BspACI CCGC 2 cut(s) 1121, 1129
BspANI GGCC 2 cut(s) 751, 1149
BspCNI CTCAG 2 cut(s) 55, 736
BspPI GGATC 1 cut(s) 1067
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 377
BsrFI RCCGGY 1 cut(s) 967
BsrI ACTGG 2 cut(s) 130, 223
BssAI RCCGGY 1 cut(s) 967
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 3 cut(s) 389, 778, 1072
BssT1I CCWWGG 1 cut(s) 721
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 2 cut(s) 257, 937
BstAPI GCANNNNNTGC 1 cut(s) 241
BstC8I GCNNGC 5 cut(s) 384, 432, 920, 1088, 1151
BstDEI CTNAG 4 cut(s) 63, 177, 421, 744
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 824
BstKTI GATC 3 cut(s) 392, 781, 1075
BstMAI GTCTC 2 cut(s) 220, 934
BstMBI GATC 3 cut(s) 389, 778, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
BstSCI CCNGG 1 cut(s) 661
BstV1I GCAGC 3 cut(s) 185, 304, 346
BstV2I GAAGAC 4 cut(s) 317, 544, 708, 888
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BsuRI GGCC 2 cut(s) 751, 1149
BtrI CACGTC 1 cut(s) 323
BtsCI GGATG 1 cut(s) 824
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 5 cut(s) 384, 432, 920, 1088, 1151
CaiI CAGNNNCTG 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 967
Cfr13I GGNCC 2 cut(s) 821, 965
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 967
CviAII CATG 7 cut(s) 298, 400, 490, 739, 793, 877, 1165
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 4 cut(s) 63, 177, 421, 744
DpnI GATC 3 cut(s) 391, 780, 1074
DpnII GATC 3 cut(s) 389, 778, 1072
Eam1104I CTCTTC 2 cut(s) 257, 937
EarI CTCTTC 2 cut(s) 257, 937
Eco130I CCWWGG 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 821, 965
Eco57I CTGAAG 2 cut(s) 538, 977
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 721
EcoT22I ATGCAT 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 7 cut(s) 301, 403, 493, 742, 796, 880, 1168
FaqI GGGAC 1 cut(s) 697
FatI CATG 7 cut(s) 297, 399, 489, 738, 792, 876, 1164
FbaI TGATCA 1 cut(s) 778
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 199, 318, 360, 1130
FokI GGATG 1 cut(s) 811
Fsp4HI GCNGC 4 cut(s) 199, 318, 360, 1130
FspBI CTAG 3 cut(s) 891, 1038, 1095
GluI GCNGC 4 cut(s) 199, 318, 360, 1130
HaeIII GGCC 2 cut(s) 751, 1149
HapII CCGG 2 cut(s) 662, 968
Hin1II CATG 7 cut(s) 301, 403, 493, 742, 796, 880, 1168
HinfI GANTC 6 cut(s) 5, 103, 405, 460, 713, 1029
HpaII CCGG 2 cut(s) 662, 968
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 6 cut(s) 10, 59, 369, 613, 745, 943
Hpy188III TCNNGA 6 cut(s) 23, 536, 593, 963, 1026, 1038
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 3 cut(s) 349, 533, 905
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 2 cut(s) 115, 322
HpyCH4V TGCA 5 cut(s) 244, 320, 434, 656, 1016
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
HpyF3I CTNAG 4 cut(s) 63, 177, 421, 744
HpySE526I ACGT 2 cut(s) 115, 322
Hsp92II CATG 7 cut(s) 301, 403, 493, 742, 796, 880, 1168
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 3 cut(s) 389, 778, 1072
LmnI GCTCC 2 cut(s) 60, 314
Lsp1109I GCAGC 3 cut(s) 185, 304, 346
LweI GCATC 3 cut(s) 231, 253, 956
MaeI CTAG 3 cut(s) 891, 1038, 1095
MaeII ACGT 2 cut(s) 115, 322
MalI GATC 3 cut(s) 391, 780, 1074
MboI GATC 3 cut(s) 389, 778, 1072
MboII GAAGA 9 cut(s) 274, 279, 317, 489, 544, 708, 893, 924, 1082
MflI RGATCY 1 cut(s) 1072
MluCI AATT 3 cut(s) 292, 617, 990
MlyI GAGTC 2 cut(s) 722, 1023
MmeI TCCRAC 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 5 cut(s) 525, 807, 972, 993, 1056
MslI CAYNNNNRTG 1 cut(s) 1163
MspI CCGG 2 cut(s) 662, 968
MspR9I CCNGG 1 cut(s) 663
Mva1269I GAATGC 2 cut(s) 602, 980
MwoI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
NciI CCSGG 1 cut(s) 663
NdeII GATC 3 cut(s) 389, 778, 1072
NlaIII CATG 7 cut(s) 301, 403, 493, 742, 796, 880, 1168
NsiI ATGCAT 1 cut(s) 246
PctI GAATGC 2 cut(s) 602, 980
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 5, 103, 405, 460
PflMI CCANNNNNTGG 1 cut(s) 830
PinAI ACCGGT 1 cut(s) 967
PkrI GCNGC 4 cut(s) 200, 319, 361, 1131
PleI GAGTC 2 cut(s) 721, 1023
PpsI GAGTC 2 cut(s) 721, 1023
PshBI ATTAAT 1 cut(s) 807
PspPI GGNCC 2 cut(s) 821, 965
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 1 cut(s) 1072
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 1163
SaqAI TTAA 5 cut(s) 525, 807, 972, 993, 1056
SatI GCNGC 4 cut(s) 199, 318, 360, 1130
Sau3AI GATC 3 cut(s) 389, 778, 1072
Sau96I GGNCC 2 cut(s) 821, 965
SchI GAGTC 2 cut(s) 722, 1023
ScrFI CCNGG 1 cut(s) 663
SfaNI GCATC 3 cut(s) 231, 253, 956
SinI GGWCC 2 cut(s) 821, 965
SmiMI CAYNNNNRTG 1 cut(s) 1163
SmlI CTYRAG 2 cut(s) 23, 629
SmoI CTYRAG 2 cut(s) 23, 629
Sse9I AATT 3 cut(s) 292, 617, 990
SsiI CCGC 2 cut(s) 1121, 1129
SspMI CTAG 3 cut(s) 891, 1038, 1095
StyD4I CCNGG 1 cut(s) 661
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 2 cut(s) 118, 325
TaqI TCGA 3 cut(s) 388, 442, 703
TaqII GACCGA 1 cut(s) 38
TasI AATT 3 cut(s) 292, 617, 990
TauI GCSGC 1 cut(s) 1132
TfiI GAWTC 4 cut(s) 5, 103, 405, 460
Tru1I TTAA 5 cut(s) 525, 807, 972, 993, 1056
Tru9I TTAA 5 cut(s) 525, 807, 972, 993, 1056
TscAI CASTG 1 cut(s) 223
TseI GCWGC 3 cut(s) 198, 317, 359
TspDTI ATGAA 4 cut(s) 286, 388, 771, 973
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 830
VpaK11BI GGWCC 2 cut(s) 821, 965
VspI ATTAAT 1 cut(s) 807
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 617
XbaI TCTAGA 1 cut(s) 1037
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 3 cut(s) 891, 1038, 1095
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.