Rmu_co8207014.1_g000001

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8207014.1
OG0000217
Physical Location & Seq
Forward (+)
1 .. 720
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8207014.1_g000001.1.cds

Sequence Viewer

Length: 720 bp
agttgatggtaaccctgaccaagcccggttgttccatgtccaagcaaagctatatgcaacggcatggaacgaaggtggaggtgaaaacaaaaagttcttcagattacatgttgctacgagtgttcagggtacctttgatatcattgacttggagtcgttggtgatattgccaaagcatgtggccttcaaaggtcacaccggcaattaccttcagcttgtggcggatgctaagctcaagttcatatccaccgataaggggattcctgagtcctggtttgaggtgtccactgatggcgacggaatggtgcaaatcaaatcctaccacgacaatagctacttttttaacagcagtgacaggatttggtctgacccaagggttgccgccaccgatccaagcaccttgttttggccggtgaaggtcgacagtaataaggtcgctttcaaaagcaacaacaaattttgcgcccaaatcagtgatgctaatgcaacagacggtctgaacgcaacctacaccagcattccaaccaactcacgcttcacgctggaggagcttgttctctctaggagaatttacaacaccgacttcgatcttaagaatgccataatctacggtgagaccccgatcaccatggccaccgcaaacgccagcaacaacacctcagtagacaacactgtggaattcaagttcgcgtacacggagagtaagagcagcacgtggag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

239

Amino Acids

26.67

Weight (kDa)

5.54

Isoelectric Point (pI)

18.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 129
AccI GTMKAC 2 cut(s) 421, 664
AccII CGCG 1 cut(s) 690
AciI CCGC 3 cut(s) 222, 382, 637
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 2 cut(s) 408, 631
AcsI RAATTY 3 cut(s) 456, 568, 678
AcuI CTGAAG 2 cut(s) 83, 195
AcvI CACGTG 1 cut(s) 715
AfaI GTAC 2 cut(s) 131, 693
AfiI CCNNNNNNNGG 2 cut(s) 256, 406
AflII CTTAAG 1 cut(s) 591
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 3 cut(s) 188, 443, 683
AhdI GACNNNNNGTC 1 cut(s) 152
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AloI GAACNNNNNNTCC 2 cut(s) 669, 701
AluBI AGCT 5 cut(s) 50, 215, 233, 334, 551
AluI AGCT 5 cut(s) 50, 215, 233, 334, 551
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 1 cut(s) 384
AoxI GGCC 3 cut(s) 181, 408, 631
ApeKI GCWGC 1 cut(s) 709
ApoI RAATTY 3 cut(s) 456, 568, 678
Asp718I GGTACC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 5 cut(s) 93, 173, 425, 617, 624
BalI TGGCCA 1 cut(s) 633
BanI GGYRCC 1 cut(s) 129
BbrPI CACGTG 1 cut(s) 715
BccI CCATC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 1 cut(s) 562
BfrI CTTAAG 1 cut(s) 591
BisI GCNGC 2 cut(s) 382, 710
BlpI GCTNAGC 1 cut(s) 229
BlsI GCNGC 2 cut(s) 383, 711
Bme1390I CCNGG 2 cut(s) 26, 272
BmeRI GACNNNNNGTC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 26, 272
BmsI GCATC 2 cut(s) 215, 467
BpmI CTGGAG 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 715
BsaI GGTCTC 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 372, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 406
Bse118I RCCGGY 2 cut(s) 198, 410
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 372, 628
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 256, 406
BseMII CTCAG 2 cut(s) 256, 673
BseRI GAGGAG 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 690
BshFI GGCC 3 cut(s) 183, 410, 633
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 3 cut(s) 26, 199, 411
BslI CCNNNNNNNGG 2 cut(s) 256, 406
BsmAI GTCTC 1 cut(s) 609
BsmI GAATGC 2 cut(s) 517, 602
BsnI GGCC 3 cut(s) 183, 410, 633
Bso31I GGTCTC 1 cut(s) 609
Bsp143I GATC 3 cut(s) 389, 587, 622
Bsp1720I GCTNAGC 1 cut(s) 229
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 3 cut(s) 222, 382, 637
BspANI GGCC 3 cut(s) 183, 410, 633
BspCNI CTCAG 2 cut(s) 257, 672
BspFNI CGCG 1 cut(s) 690
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 129
BspTI CTTAAG 1 cut(s) 591
BspTNI GGTCTC 1 cut(s) 609
BsrFI RCCGGY 2 cut(s) 198, 410
BssAI RCCGGY 2 cut(s) 198, 410
BssECI CCNNGG 2 cut(s) 372, 628
BssMI GATC 3 cut(s) 389, 587, 622
BssT1I CCWWGG 2 cut(s) 372, 628
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 426, 495, 612, 674
BstAFI CTTAAG 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 715
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 3 cut(s) 229, 265, 659
BstDSI CCRYGG 1 cut(s) 628
BstEII GGTNACC 1 cut(s) 9
BstF5I GGATG 1 cut(s) 230
BstFNI CGCG 1 cut(s) 690
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 3 cut(s) 392, 590, 625
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 3 cut(s) 389, 587, 622
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 2 cut(s) 111, 180
BstPI GGTNACC 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 24, 270
BstUI CGCG 1 cut(s) 690
BsuRI GGCC 3 cut(s) 183, 410, 633
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 4 cut(s) 286, 356, 479, 670
Cac8I GCNNGC 1 cut(s) 647
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 2 cut(s) 198, 410
Csp6I GTAC 2 cut(s) 130, 692
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 5 cut(s) 36, 64, 108, 177, 629
CviJI RGCY 9 cut(s) 24, 50, 183, 215, 233, 334, 410, 551, 633
CviKI_1 RGCY 9 cut(s) 24, 50, 183, 215, 233, 334, 410, 551, 633
CviQI GTAC 2 cut(s) 130, 692
DdeI CTNAG 3 cut(s) 229, 265, 659
DpnI GATC 3 cut(s) 391, 589, 624
DpnII GATC 3 cut(s) 389, 587, 622
DriI GACNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 2 cut(s) 408, 631
Eam1105I GACNNNNNGTC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 372, 628
Eco31I GGTCTC 1 cut(s) 609
Eco32I GATATC 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 83, 195
Eco72I CACGTG 1 cut(s) 715
Eco91I GGTNACC 1 cut(s) 9
EcoO65I GGTNACC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 140
EcoT14I CCWWGG 2 cut(s) 372, 628
ErhI CCWWGG 2 cut(s) 372, 628
FaeI CATG 5 cut(s) 39, 67, 111, 180, 632
FaiI YATR 9 cut(s) 37, 53, 55, 65, 109, 178, 243, 603, 630
FatI CATG 5 cut(s) 35, 63, 107, 176, 628
FblI GTMKAC 2 cut(s) 421, 664
Fnu4HI GCNGC 2 cut(s) 382, 710
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 382, 710
FspBI CTAG 1 cut(s) 562
GlaI GCGC 1 cut(s) 464
GluI GCNGC 2 cut(s) 382, 710
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 3 cut(s) 183, 410, 633
HapII CCGG 3 cut(s) 26, 199, 411
HhaI GCGC 1 cut(s) 465
Hin1II CATG 5 cut(s) 39, 67, 111, 180, 632
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 422
HindII GTYRAC 1 cut(s) 422
HinfI GANTC 3 cut(s) 153, 260, 267
HpaII CCGG 3 cut(s) 26, 199, 411
HphI GGTGA 5 cut(s) 93, 173, 425, 617, 624
Hpy166II GTNNAC 4 cut(s) 286, 422, 665, 694
Hpy188I TCNGA 3 cut(s) 102, 368, 499
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 4 cut(s) 286, 422, 665, 694
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 4 cut(s) 66, 194, 219, 410
HpyCH4III ACNGT 4 cut(s) 426, 495, 612, 674
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 3 cut(s) 57, 308, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 3 cut(s) 229, 265, 659
HpySE526I ACGT 1 cut(s) 714
Hsp92II CATG 5 cut(s) 39, 67, 111, 180, 632
HspAI GCGC 1 cut(s) 463
KpnI GGTACC 1 cut(s) 133
Kzo9I GATC 3 cut(s) 389, 587, 622
LmnI GCTCC 1 cut(s) 548
LweI GCATC 2 cut(s) 215, 467
MaeI CTAG 1 cut(s) 562
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 3 cut(s) 9, 192, 351
MalI GATC 3 cut(s) 391, 589, 624
MboI GATC 3 cut(s) 389, 587, 622
MboII GAAGA 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 4 cut(s) 203, 456, 568, 678
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 2 cut(s) 162, 276
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 4 cut(s) 72, 272, 539, 668
Mox20I TGGCCA 1 cut(s) 633
MscI TGGCCA 1 cut(s) 633
MseI TTAA 2 cut(s) 343, 592
Msp20I TGGCCA 1 cut(s) 633
MspCI CTTAAG 1 cut(s) 591
MspI CCGG 3 cut(s) 26, 199, 411
MspR9I CCNGG 2 cut(s) 26, 272
Mva1269I GAATGC 2 cut(s) 517, 602
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 690
MwoI GCNNNNNNNGC 1 cut(s) 548
NciI CCSGG 1 cut(s) 26
NcoI CCATGG 1 cut(s) 628
NdeII GATC 3 cut(s) 389, 587, 622
NlaIII CATG 5 cut(s) 39, 67, 111, 180, 632
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 2 cut(s) 192, 351
NspI RCATGY 2 cut(s) 111, 180
PciI ACATGT 1 cut(s) 107
PctI GAATGC 2 cut(s) 517, 602
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 383, 711
PleI GAGTC 2 cut(s) 161, 275
PmaCI CACGTG 1 cut(s) 715
PmlI CACGTG 1 cut(s) 715
PpsI GAGTC 2 cut(s) 161, 275
Ppu21I YACGTR 1 cut(s) 715
PscI ACATGT 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 270
PspCI CACGTG 1 cut(s) 715
PspEI GGTNACC 1 cut(s) 9
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 131
PsrI GAACNNNNNNTAC 2 cut(s) 492, 524
RsaI GTAC 2 cut(s) 131, 693
RsaNI GTAC 2 cut(s) 130, 692
SalI GTCGAC 1 cut(s) 420
SaqAI TTAA 2 cut(s) 343, 592
SatI GCNGC 2 cut(s) 382, 710
Sau3AI GATC 3 cut(s) 389, 587, 622
SchI GAGTC 2 cut(s) 162, 276
ScrFI CCNGG 2 cut(s) 26, 272
SfaNI GCATC 2 cut(s) 215, 467
SmlI CTYRAG 2 cut(s) 234, 591
SmoI CTYRAG 2 cut(s) 234, 591
Sse9I AATT 4 cut(s) 203, 456, 568, 678
SsiI CCGC 3 cut(s) 222, 382, 637
SspMI CTAG 1 cut(s) 562
StyD4I CCNGG 2 cut(s) 24, 270
StyI CCWWGG 2 cut(s) 372, 628
TaaI ACNGT 4 cut(s) 426, 495, 612, 674
TaiI ACGT 1 cut(s) 717
TaqI TCGA 2 cut(s) 421, 586
TasI AATT 4 cut(s) 203, 456, 568, 678
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 343, 592
Tru9I TTAA 2 cut(s) 343, 592
TscAI CASTG 4 cut(s) 293, 356, 479, 677
TseFI GTSAC 2 cut(s) 192, 351
TseI GCWGC 1 cut(s) 709
Tsp45I GTSAC 2 cut(s) 192, 351
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 2 cut(s) 313, 711
TspRI CASTG 4 cut(s) 293, 356, 479, 677
Vha464I CTTAAG 1 cut(s) 591
XapI RAATTY 3 cut(s) 456, 568, 678
XceI RCATGY 2 cut(s) 111, 180
XmiI GTMKAC 2 cut(s) 421, 664
XspI CTAG 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.