pycom10g12090

Agglutinin domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
15707610 .. 15707831
222 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g12090.1

Sequence Viewer

Length: 222 bp
ATGCTTACCTCAAAAGATGTGGCTAGTGTGTTCGCAGTCCTCGATTGGGAATCACTGGTCGTGACACTTCCCAAACATGTGACGTTCAAAGGCTACAATGGTAACTACCTCAGCGCCCGCTTGAACGACGGACACTCATATCTGCAGTTTCAACCACCAAAATTGGAGATCCAATGGTGGGGAACCAGGTCTTCACCAATGCGAACGGGAGCATCCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.23

Weight (kDa)

9.22

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 118
AclWI GGATC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 46, 178
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 3 cut(s) 88, 124, 152
AjnI CCWGG 1 cut(s) 185
AlwI GGATC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 187
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 110
BsaXI ACNNNNNCTCC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 178
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 2 cut(s) 46, 178
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 46, 178
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 147
BspPI GGATC 1 cut(s) 163
BsrI ACTGG 1 cut(s) 60
BssMI GATC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BtsCI GGATG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 1 cut(s) 116
CsiI ACCWGGT 1 cut(s) 185
CspCI CAANNNNNGTGG 3 cut(s) 35, 144, 179
CviAII CATG 1 cut(s) 77
CviJI RGCY 2 cut(s) 23, 93
CviKI_1 RGCY 2 cut(s) 23, 93
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 185
FaeI CATG 1 cut(s) 80
FaiI YATR 3 cut(s) 78, 139, 220
FatI CATG 1 cut(s) 76
FauI CCCGC 1 cut(s) 125
FokI GGATG 1 cut(s) 199
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 117
HhaI GCGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 3 cut(s) 41, 172, 199
MabI ACCWGGT 1 cut(s) 185
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 3 cut(s) 61, 79, 101
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 168
MluCI AATT 1 cut(s) 161
MnlI CCTC 3 cut(s) 19, 50, 119
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
NdeII GATC 1 cut(s) 168
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 61, 79
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 1 cut(s) 50
PscI ACATGT 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 1 cut(s) 168
Sau3AI GATC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 187
SetI ASST 4 cut(s) 11, 86, 111, 191
SexAI ACCWGGT 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 143
SgeI CNNG 9 cut(s) 36, 53, 68, 73, 89, 129, 133, 198, 199
Sse9I AATT 1 cut(s) 161
SsiI CCGC 1 cut(s) 118
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 185
TaiI ACGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 161
TfiI GAWTC 1 cut(s) 50
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 2 cut(s) 61, 79
Tsp45I GTSAC 2 cut(s) 61, 79
TspGWI ACGGA 2 cut(s) 144, 205
TspRI CASTG 1 cut(s) 60
XceI RCATGY 1 cut(s) 80
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.