Agglutinin domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 122 - 169 | 2.5e-06 | PPR repeat family |
| PPR_2 | PF13041 | 226 - 277 | 6e-12 | PPR repeat family |
| PPR | PF01535 | 228 - 258 | 6e-07 | PPR repeat |
| PPR_2 | PF13041 | 438 - 485 | 5.8e-07 | PPR repeat family |
| PPR_2 | PF13041 | 642 - 689 | 1.3e-08 | PPR repeat family |
| PPR_2 | PF13041 | 742 - 790 | 1.2e-12 | PPR repeat family |
| PPR_1 | PF12854 | 742 - 771 | 8.1e-06 | PPR repeat |
| PPR | PF01535 | 745 - 772 | 5.6e-08 | PPR repeat |
| E_motif | PF20431 | 864 - 923 | 2.1e-19 | E motif |
| DYW_deaminase | PF14432 | 960 - 1051 | 6.5e-40 | DYW family of nucleic acid deaminases |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 741 |
| Acc36I | ACCTGC | 1 cut(s) | 829 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 514 |
| AccBSI | CCGCTC | 4 cut(s) | 9, 63, 411, 1360 |
| AccI | GTMKAC | 2 cut(s) | 800, 1305 |
| AccII | CGCG | 1 cut(s) | 3096 |
| AclI | AACGTT | 1 cut(s) | 303 |
| AclWI | GGATC | 1 cut(s) | 1475 |
| AcsI | RAATTY | 7 cut(s) | 676, 691, 1139, 1630, 1939, 2242, 2897 |
| AcuI | CTGAAG | 3 cut(s) | 1650, 2052, 2867 |
| AdeI | CACNNNGTG | 1 cut(s) | 1569 |
| AfaI | GTAC | 4 cut(s) | 217, 819, 911, 2424 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 514, 721, 1566, 1641, 2349 |
| AflII | CTTAAG | 1 cut(s) | 530 |
| AflIII | ACRYGT | 2 cut(s) | 2163, 2673 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1621 |
| AjiI | CACGTC | 1 cut(s) | 2704 |
| AjnI | CCWGG | 2 cut(s) | 507, 2237 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1164, 1196 |
| Alw21I | GWGCWC | 4 cut(s) | 925, 1974, 2155, 2451 |
| Alw26I | GTCTC | 3 cut(s) | 736, 1305, 1349 |
| Alw44I | GTGCAC | 1 cut(s) | 2151 |
| AlwI | GGATC | 1 cut(s) | 1475 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 734 |
| AoxI | GGCC | 2 cut(s) | 1783, 1983 |
| ApaLI | GTGCAC | 1 cut(s) | 2151 |
| ApeKI | GCWGC | 2 cut(s) | 1820, 2735 |
| ApoI | RAATTY | 7 cut(s) | 676, 691, 1139, 1630, 1939, 2242, 2897 |
| AseI | ATTAAT | 2 cut(s) | 1430, 2249 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 237, 1592, 2394 |
| AspA2I | CCTAGG | 1 cut(s) | 2438 |
| AspLEI | GCGC | 1 cut(s) | 1849 |
| AspS9I | GGNCC | 2 cut(s) | 518, 2353 |
| AsuC2I | CCSGG | 3 cut(s) | 406, 650, 1585 |
| AsuHPI | GGTGA | 8 cut(s) | 82, 90, 113, 1001, 1045, 2627, 2761, 3047 |
| AsuNHI | GCTAGC | 1 cut(s) | 589 |
| AvaII | GGWCC | 2 cut(s) | 518, 2353 |
| AvrII | CCTAGG | 1 cut(s) | 2438 |
| BaeGI | GKGCMC | 1 cut(s) | 2155 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 199, 232 |
| BanII | GRGCYC | 2 cut(s) | 1974, 2382 |
| BauI | CACGAG | 2 cut(s) | 1775, 2381 |
| Bbv12I | GWGCWC | 4 cut(s) | 925, 1974, 2155, 2451 |
| BbvI | GCAGC | 2 cut(s) | 1807, 2747 |
| BceAI | ACGGC | 1 cut(s) | 199 |
| BciT130I | CCWGG | 2 cut(s) | 509, 2239 |
| BciVI | GTATCC | 1 cut(s) | 1949 |
| BcnI | CCSGG | 3 cut(s) | 406, 650, 1585 |
| BcoDI | GTCTC | 3 cut(s) | 736, 1305, 1349 |
| BfaI | CTAG | 8 cut(s) | 590, 966, 1653, 1781, 1905, 2439, 2600, 2715 |
| BfmI | CTRYAG | 2 cut(s) | 1752, 1800 |
| BfrI | CTTAAG | 1 cut(s) | 530 |
| BfuAI | ACCTGC | 1 cut(s) | 829 |
| BfuI | GTATCC | 1 cut(s) | 1949 |
| BglII | AGATCT | 1 cut(s) | 1706 |
| BisI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| BlnI | CCTAGG | 1 cut(s) | 2438 |
| BlpI | GCTNAGC | 1 cut(s) | 872 |
| BlsI | GCNGC | 3 cut(s) | 62, 1822, 2737 |
| Bme1390I | CCNGG | 5 cut(s) | 406, 509, 650, 1585, 2239 |
| Bme18I | GGWCC | 2 cut(s) | 518, 2353 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1621 |
| BmgBI | CACGTC | 1 cut(s) | 2704 |
| BmgT120I | GGNCC | 2 cut(s) | 518, 2353 |
| BmiI | GGNNCC | 4 cut(s) | 519, 2354, 2436, 2637 |
| BmrFI | CCNGG | 5 cut(s) | 406, 509, 650, 1585, 2239 |
| BmsI | GCATC | 7 cut(s) | 531, 631, 715, 1267, 1360, 1593, 2863 |
| BmtI | GCTAGC | 1 cut(s) | 593 |
| BpmI | CTGGAG | 2 cut(s) | 845, 2942 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 872 |
| BpuEI | CTTGAG | 2 cut(s) | 255, 1047 |
| BpuMI | CCSGG | 3 cut(s) | 406, 650, 1585 |
| BsaAI | YACGTR | 2 cut(s) | 338, 913 |
| BsaI | GGTCTC | 1 cut(s) | 1349 |
| BsaJI | CCNNGG | 4 cut(s) | 1980, 1986, 2438, 2575 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2775, 2805 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 514, 721, 1566, 1641, 2349 |
| Bse1I | ACTGG | 7 cut(s) | 895, 1035, 1207, 2219, 2436, 2925, 2989 |
| Bse3DI | GCAATG | 3 cut(s) | 18, 2275, 2587 |
| BseBI | CCWGG | 2 cut(s) | 509, 2239 |
| BseDI | CCNNGG | 4 cut(s) | 1980, 1986, 2438, 2575 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 514, 721, 1566, 1641, 2349 |
| BseMI | GCAATG | 3 cut(s) | 18, 2275, 2587 |
| BseMII | CTCAG | 5 cut(s) | 863, 1395, 2045, 2282, 2933 |
| BseNI | ACTGG | 7 cut(s) | 895, 1035, 1207, 2219, 2436, 2925, 2989 |
| BseRI | GAGGAG | 2 cut(s) | 95, 1062 |
| BseSI | GKGCMC | 1 cut(s) | 2155 |
| BseXI | GCAGC | 2 cut(s) | 1807, 2747 |
| BseYI | CCCAGC | 2 cut(s) | 2753, 2801 |
| BsgI | GTGCAG | 1 cut(s) | 2779 |
| Bsh1236I | CGCG | 1 cut(s) | 3096 |
| Bsh1285I | CGRYCG | 1 cut(s) | 791 |
| BshFI | GGCC | 2 cut(s) | 1785, 1985 |
| BsiEI | CGRYCG | 1 cut(s) | 791 |
| BsiHKAI | GWGCWC | 4 cut(s) | 925, 1974, 2155, 2451 |
| BsiSI | CCGG | 3 cut(s) | 406, 649, 1585 |
| BslFI | GGGAC | 3 cut(s) | 1491, 1524, 2819 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 514, 721, 1566, 1641, 2349 |
| BsmAI | GTCTC | 3 cut(s) | 736, 1305, 1349 |
| BsmFI | GGGAC | 3 cut(s) | 1491, 1524, 2819 |
| BsmI | GAATGC | 3 cut(s) | 1743, 1849, 1914 |
| BsnI | GGCC | 2 cut(s) | 1785, 1985 |
| Bso31I | GGTCTC | 1 cut(s) | 1349 |
| Bsp1286I | GDGCHC | 5 cut(s) | 925, 1974, 2155, 2382, 2451 |
| Bsp143I | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 872 |
| Bsp19I | CCATGG | 1 cut(s) | 1986 |
| BspANI | GGCC | 2 cut(s) | 1785, 1985 |
| BspCNI | CTCAG | 5 cut(s) | 864, 1396, 2046, 2283, 2934 |
| BspFNI | CGCG | 1 cut(s) | 3096 |
| BspHI | TCATGA | 1 cut(s) | 1470 |
| BspLI | GGNNCC | 4 cut(s) | 519, 2354, 2436, 2637 |
| BspMAI | CTGCAG | 1 cut(s) | 1756 |
| BspMI | ACCTGC | 1 cut(s) | 829 |
| BspOI | GCTAGC | 1 cut(s) | 593 |
| BspPI | GGATC | 1 cut(s) | 1475 |
| BspQI | GCTCTTC | 2 cut(s) | 70, 1548 |
| BspTI | CTTAAG | 1 cut(s) | 530 |
| BspTNI | GGTCTC | 1 cut(s) | 1349 |
| BsrBI | CCGCTC | 4 cut(s) | 9, 63, 411, 1360 |
| BsrDI | GCAATG | 3 cut(s) | 18, 2275, 2587 |
| BsrI | ACTGG | 7 cut(s) | 895, 1035, 1207, 2219, 2436, 2925, 2989 |
| BssECI | CCNNGG | 4 cut(s) | 1980, 1986, 2438, 2575 |
| BssMI | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| BssNAI | GTATAC | 1 cut(s) | 801 |
| BssSI | CACGAG | 2 cut(s) | 1775, 2381 |
| BssT1I | CCWWGG | 3 cut(s) | 1980, 1986, 2438 |
| Bst1107I | GTATAC | 1 cut(s) | 801 |
| Bst2BI | CACGAG | 2 cut(s) | 1775, 2381 |
| Bst2UI | CCWGG | 2 cut(s) | 509, 2239 |
| Bst4CI | ACNGT | 6 cut(s) | 1832, 1889, 2050, 2557, 2954, 2997 |
| Bst6I | CTCTTC | 3 cut(s) | 70, 1168, 1548 |
| BstAFI | CTTAAG | 1 cut(s) | 530 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 734 |
| BstBAI | YACGTR | 2 cut(s) | 338, 913 |
| BstDEI | CTNAG | 6 cut(s) | 814, 872, 1404, 2054, 2291, 2942 |
| BstDSI | CCRYGG | 1 cut(s) | 1986 |
| BstEII | GGTNACC | 1 cut(s) | 2767 |
| BstFNI | CGCG | 1 cut(s) | 3096 |
| BstHHI | GCGC | 1 cut(s) | 1849 |
| BstKTI | GATC | 8 cut(s) | 666, 1338, 1470, 1709, 2323, 2335, 2470, 2914 |
| BstMAI | GTCTC | 3 cut(s) | 736, 1305, 1349 |
| BstMBI | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| BstMCI | CGRYCG | 1 cut(s) | 791 |
| BstNI | CCWGG | 2 cut(s) | 509, 2239 |
| BstNSI | RCATGY | 3 cut(s) | 760, 2167, 2677 |
| BstPI | GGTNACC | 1 cut(s) | 2767 |
| BstSCI | CCNGG | 5 cut(s) | 404, 507, 648, 1583, 2237 |
| BstSFI | CTRYAG | 2 cut(s) | 1752, 1800 |
| BstSLI | GKGCMC | 1 cut(s) | 2155 |
| BstSNI | TACGTA | 1 cut(s) | 913 |
| BstUI | CGCG | 1 cut(s) | 3096 |
| BstV1I | GCAGC | 2 cut(s) | 1807, 2747 |
| BstX2I | RGATCY | 1 cut(s) | 1706 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1987, 1993 |
| BstYI | RGATCY | 1 cut(s) | 1706 |
| BstZ17I | GTATAC | 1 cut(s) | 801 |
| BsuI | GTATCC | 1 cut(s) | 1949 |
| BsuRI | GGCC | 2 cut(s) | 1785, 1985 |
| BtgI | CCRYGG | 1 cut(s) | 1986 |
| BtrI | CACGTC | 1 cut(s) | 2704 |
| BtsI | GCAGTG | 2 cut(s) | 2745, 3045 |
| BtsIMutI | CAGTG | 4 cut(s) | 1134, 2745, 2959, 3045 |
| BveI | ACCTGC | 1 cut(s) | 829 |
| CaiI | CAGNNNCTG | 1 cut(s) | 734 |
| CciI | TCATGA | 1 cut(s) | 1470 |
| CfoI | GCGC | 1 cut(s) | 1849 |
| Cfr13I | GGNCC | 2 cut(s) | 518, 2353 |
| Csp6I | GTAC | 4 cut(s) | 216, 818, 910, 2423 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1607, 1642 |
| CviQI | GTAC | 4 cut(s) | 216, 818, 910, 2423 |
| DdeI | CTNAG | 6 cut(s) | 814, 872, 1404, 2054, 2291, 2942 |
| DpnI | GATC | 8 cut(s) | 665, 1337, 1469, 1708, 2322, 2334, 2469, 2913 |
| DpnII | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| DraI | TTTAAA | 2 cut(s) | 442, 1809 |
| DraIII | CACNNNGTG | 1 cut(s) | 1569 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1621 |
| Eam1104I | CTCTTC | 3 cut(s) | 70, 1168, 1548 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1621 |
| EarI | CTCTTC | 3 cut(s) | 70, 1168, 1548 |
| EciI | GGCGGA | 3 cut(s) | 47, 129, 854 |
| Ecl136II | GAGCTC | 1 cut(s) | 1972 |
| Eco105I | TACGTA | 1 cut(s) | 913 |
| Eco130I | CCWWGG | 3 cut(s) | 1980, 1986, 2438 |
| Eco24I | GRGCYC | 2 cut(s) | 1974, 2382 |
| Eco31I | GGTCTC | 1 cut(s) | 1349 |
| Eco47I | GGWCC | 2 cut(s) | 518, 2353 |
| Eco53kI | GAGCTC | 1 cut(s) | 1972 |
| Eco57I | CTGAAG | 3 cut(s) | 1650, 2052, 2867 |
| Eco91I | GGTNACC | 1 cut(s) | 2767 |
| EcoICRI | GAGCTC | 1 cut(s) | 1972 |
| EcoO109I | RGGNCCY | 2 cut(s) | 518, 2353 |
| EcoO65I | GGTNACC | 1 cut(s) | 2767 |
| EcoRI | GAATTC | 4 cut(s) | 691, 1630, 1939, 2242 |
| EcoRII | CCWGG | 2 cut(s) | 507, 2237 |
| EcoT14I | CCWWGG | 3 cut(s) | 1980, 1986, 2438 |
| EcoT22I | ATGCAT | 2 cut(s) | 573, 1189 |
| EcoT38I | GRGCYC | 2 cut(s) | 1974, 2382 |
| ErhI | CCWWGG | 3 cut(s) | 1980, 1986, 2438 |
| FaqI | GGGAC | 3 cut(s) | 1491, 1524, 2819 |
| FauI | CCCGC | 1 cut(s) | 3134 |
| FauNDI | CATATG | 1 cut(s) | 2974 |
| FblI | GTMKAC | 2 cut(s) | 800, 1305 |
| Fnu4HI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| FriOI | GRGCYC | 2 cut(s) | 1974, 2382 |
| Fsp4HI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| FspBI | CTAG | 8 cut(s) | 590, 966, 1653, 1781, 1905, 2439, 2600, 2715 |
| GlaI | GCGC | 1 cut(s) | 1848 |
| GluI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| GsaI | CCCAGC | 2 cut(s) | 2757, 2805 |
| GsuI | CTGGAG | 2 cut(s) | 845, 2942 |
| HaeIII | GGCC | 2 cut(s) | 1785, 1985 |
| HapII | CCGG | 3 cut(s) | 406, 649, 1585 |
| HhaI | GCGC | 1 cut(s) | 1849 |
| Hin6I | GCGC | 1 cut(s) | 1847 |
| HinP1I | GCGC | 1 cut(s) | 1847 |
| HincII | GTYRAC | 1 cut(s) | 2161 |
| HindII | GTYRAC | 1 cut(s) | 2161 |
| HindIII | AAGCTT | 4 cut(s) | 527, 743, 1456, 2960 |
| HpaII | CCGG | 3 cut(s) | 406, 649, 1585 |
| HphI | GGTGA | 8 cut(s) | 82, 90, 113, 1001, 1045, 2627, 2761, 3047 |
| Hpy166II | GTNNAC | 7 cut(s) | 709, 801, 1306, 1874, 2153, 2161, 2653 |
| Hpy188I | TCNGA | 9 cut(s) | 580, 1335, 1405, 1561, 1660, 2022, 2055, 2134, 2292 |
| Hpy8I | GTNNAC | 7 cut(s) | 709, 801, 1306, 1874, 2153, 2161, 2653 |
| Hpy99I | CGWCG | 1 cut(s) | 353 |
| HpyCH4III | ACNGT | 6 cut(s) | 1832, 1889, 2050, 2557, 2954, 2997 |
| HpyCH4IV | ACGT | 5 cut(s) | 303, 337, 912, 2337, 2703 |
| HpyF3I | CTNAG | 6 cut(s) | 814, 872, 1404, 2054, 2291, 2942 |
| HpySE526I | ACGT | 5 cut(s) | 303, 337, 912, 2337, 2703 |
| HspAI | GCGC | 1 cut(s) | 1847 |
| Kzo9I | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| LguI | GCTCTTC | 2 cut(s) | 70, 1548 |
| LmnI | GCTCC | 4 cut(s) | 408, 864, 2440, 2446 |
| Lsp1109I | GCAGC | 2 cut(s) | 1807, 2747 |
| LweI | GCATC | 7 cut(s) | 531, 631, 715, 1267, 1360, 1593, 2863 |
| MaeI | CTAG | 8 cut(s) | 590, 966, 1653, 1781, 1905, 2439, 2600, 2715 |
| MaeII | ACGT | 5 cut(s) | 303, 337, 912, 2337, 2703 |
| MaeIII | GTNAC | 7 cut(s) | 373, 1729, 2338, 2588, 2767, 2991, 3035 |
| MalI | GATC | 8 cut(s) | 665, 1337, 1469, 1708, 2322, 2334, 2469, 2913 |
| MbiI | CCGCTC | 4 cut(s) | 9, 63, 411, 1360 |
| MboI | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| MflI | RGATCY | 1 cut(s) | 1706 |
| MhlI | GDGCHC | 5 cut(s) | 925, 1974, 2155, 2382, 2451 |
| MlyI | GAGTC | 2 cut(s) | 203, 2024 |
| MmeI | TCCRAC | 6 cut(s) | 928, 1006, 1072, 1584, 1916, 2613 |
| Mph1103I | ATGCAT | 2 cut(s) | 573, 1189 |
| MroXI | GAANNNNTTC | 3 cut(s) | 237, 1592, 2394 |
| MslI | CAYNNNNRTG | 4 cut(s) | 171, 1076, 2106, 2306 |
| MspCI | CTTAAG | 1 cut(s) | 530 |
| MspI | CCGG | 3 cut(s) | 406, 649, 1585 |
| MspR9I | CCNGG | 5 cut(s) | 406, 509, 650, 1585, 2239 |
| MssI | GTTTAAAC | 1 cut(s) | 442 |
| Mva1269I | GAATGC | 3 cut(s) | 1743, 1849, 1914 |
| MvaI | CCWGG | 2 cut(s) | 509, 2239 |
| MvnI | CGCG | 1 cut(s) | 3096 |
| NciI | CCSGG | 3 cut(s) | 406, 650, 1585 |
| NcoI | CCATGG | 1 cut(s) | 1986 |
| NdeI | CATATG | 1 cut(s) | 2974 |
| NdeII | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| NheI | GCTAGC | 1 cut(s) | 589 |
| NlaIV | GGNNCC | 4 cut(s) | 519, 2354, 2436, 2637 |
| NmeAIII | GCCGAG | 2 cut(s) | 495, 2600 |
| NmuCI | GTSAC | 3 cut(s) | 2767, 2991, 3035 |
| NsiI | ATGCAT | 2 cut(s) | 573, 1189 |
| NspI | RCATGY | 3 cut(s) | 760, 2167, 2677 |
| PagI | TCATGA | 1 cut(s) | 1470 |
| PciI | ACATGT | 2 cut(s) | 2163, 2673 |
| PciSI | GCTCTTC | 2 cut(s) | 70, 1548 |
| PctI | GAATGC | 3 cut(s) | 1743, 1849, 1914 |
| PdmI | GAANNNNTTC | 3 cut(s) | 237, 1592, 2394 |
| PfeI | GAWTC | 8 cut(s) | 575, 842, 1106, 1580, 1792, 2129, 2202, 3098 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 514 |
| PfoI | TCCNGGA | 2 cut(s) | 1583, 2237 |
| PkrI | GCNGC | 3 cut(s) | 62, 1822, 2737 |
| PleI | GAGTC | 2 cut(s) | 203, 2024 |
| PmeI | GTTTAAAC | 1 cut(s) | 442 |
| PpsI | GAGTC | 2 cut(s) | 203, 2024 |
| Ppu21I | YACGTR | 2 cut(s) | 338, 913 |
| PpuMI | RGGWCCY | 2 cut(s) | 518, 2353 |
| PscI | ACATGT | 2 cut(s) | 2163, 2673 |
| PshBI | ATTAAT | 2 cut(s) | 1430, 2249 |
| PsiI | TTATAA | 1 cut(s) | 741 |
| Psp124BI | GAGCTC | 1 cut(s) | 1974 |
| Psp1406I | AACGTT | 1 cut(s) | 303 |
| Psp5II | RGGWCCY | 2 cut(s) | 518, 2353 |
| Psp6I | CCWGG | 2 cut(s) | 507, 2237 |
| PspEI | GGTNACC | 1 cut(s) | 2767 |
| PspFI | CCCAGC | 2 cut(s) | 2753, 2801 |
| PspGI | CCWGG | 2 cut(s) | 507, 2237 |
| PspN4I | GGNNCC | 4 cut(s) | 519, 2354, 2436, 2637 |
| PspPI | GGNCC | 2 cut(s) | 518, 2353 |
| PspPPI | RGGWCCY | 2 cut(s) | 518, 2353 |
| PstI | CTGCAG | 1 cut(s) | 1756 |
| PstNI | CAGNNNCTG | 1 cut(s) | 734 |
| PsuI | RGATCY | 1 cut(s) | 1706 |
| RsaI | GTAC | 4 cut(s) | 217, 819, 911, 2424 |
| RsaNI | GTAC | 4 cut(s) | 216, 818, 910, 2423 |
| RseI | CAYNNNNRTG | 4 cut(s) | 171, 1076, 2106, 2306 |
| SacI | GAGCTC | 1 cut(s) | 1974 |
| SapI | GCTCTTC | 2 cut(s) | 70, 1548 |
| SatI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| Sau3AI | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| Sau96I | GGNCC | 2 cut(s) | 518, 2353 |
| SchI | GAGTC | 2 cut(s) | 203, 2024 |
| ScrFI | CCNGG | 5 cut(s) | 406, 509, 650, 1585, 2239 |
| SduI | GDGCHC | 5 cut(s) | 925, 1974, 2155, 2382, 2451 |
| SfaNI | GCATC | 7 cut(s) | 531, 631, 715, 1267, 1360, 1593, 2863 |
| SfcI | CTRYAG | 2 cut(s) | 1752, 1800 |
| SinI | GGWCC | 2 cut(s) | 518, 2353 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 171, 1076, 2106, 2306 |
| SmlI | CTYRAG | 3 cut(s) | 270, 530, 1062 |
| SmoI | CTYRAG | 3 cut(s) | 270, 530, 1062 |
| SnaBI | TACGTA | 1 cut(s) | 913 |
| SspI | AATATT | 3 cut(s) | 1102, 1688, 3070 |
| SspMI | CTAG | 8 cut(s) | 590, 966, 1653, 1781, 1905, 2439, 2600, 2715 |
| SstI | GAGCTC | 1 cut(s) | 1974 |
| StyD4I | CCNGG | 5 cut(s) | 404, 507, 648, 1583, 2237 |
| StyI | CCWWGG | 3 cut(s) | 1980, 1986, 2438 |
| TaaI | ACNGT | 6 cut(s) | 1832, 1889, 2050, 2557, 2954, 2997 |
| TaiI | ACGT | 5 cut(s) | 306, 340, 915, 2340, 2706 |
| TaqI | TCGA | 7 cut(s) | 150, 348, 563, 695, 1007, 1347, 2916 |
| TaqII | GACCGA | 1 cut(s) | 805 |
| TatI | WGTACW | 1 cut(s) | 2422 |
| TauI | GCSGC | 1 cut(s) | 63 |
| TfiI | GAWTC | 8 cut(s) | 575, 842, 1106, 1580, 1792, 2129, 2202, 3098 |
| TscAI | CASTG | 4 cut(s) | 1141, 2745, 2959, 3052 |
| TseFI | GTSAC | 3 cut(s) | 2767, 2991, 3035 |
| TseI | GCWGC | 2 cut(s) | 1820, 2735 |
| Tsp45I | GTSAC | 3 cut(s) | 2767, 2991, 3035 |
| TspGWI | ACGGA | 1 cut(s) | 460 |
| TspRI | CASTG | 4 cut(s) | 1141, 2745, 2959, 3052 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 514 |
| Vha464I | CTTAAG | 1 cut(s) | 530 |
| VneI | GTGCAC | 1 cut(s) | 2151 |
| VpaK11BI | GGWCC | 2 cut(s) | 518, 2353 |
| VspI | ATTAAT | 2 cut(s) | 1430, 2249 |
| XapI | RAATTY | 7 cut(s) | 676, 691, 1139, 1630, 1939, 2242, 2897 |
| XbaI | TCTAGA | 1 cut(s) | 1904 |
| XceI | RCATGY | 3 cut(s) | 760, 2167, 2677 |
| XmaJI | CCTAGG | 1 cut(s) | 2438 |
| XmiI | GTMKAC | 2 cut(s) | 800, 1305 |
| XmnI | GAANNNNTTC | 3 cut(s) | 237, 1592, 2394 |
| XspI | CTAG | 8 cut(s) | 590, 966, 1653, 1781, 1905, 2439, 2600, 2715 |
| Zsp2I | ATGCAT | 2 cut(s) | 573, 1189 |