pycom14g20100

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000217
Physical Location & Seq
Reverse (-)
21214232 .. 21214459
228 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g20100.1

Sequence Viewer

Length: 228 bp
ATGCTGTTTCAACAACATGTACTTGAGAAAGGCGAACCACTAGCAGTGTTGGATTGTAGCTGGGGCTTACGAGCCAGAGGAAGTACAAGTCATTGGTCCAGCACATTGTTCAAGCATGTGGTTGTCCATTCAGACAACAAGGTAGTCTTCCGATTATTCCACGTGCAACTCAGGCACTTTGTGACGTCATTCACTGTTAACGACTTCAACCAGTGGAAAAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

76

Amino Acids

8.84

Weight (kDa)

9.62

Isoelectric Point (pI)

13.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 220
AcvI CACGTG 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 181
AfaI GTAC 2 cut(s) 21, 85
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 3 cut(s) 11, 112, 208
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
ApoI RAATTY 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 96
AvaII GGWCC 1 cut(s) 96
BbrPI CACGTG 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 139
BfaI CTAG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNSI RCATGY 2 cut(s) 20, 119
BstV2I GAAGAC 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 192, 218
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 2 cut(s) 20, 84
CviAII CATG 2 cut(s) 17, 116
CviJI RGCY 3 cut(s) 60, 66, 74
CviKI_1 RGCY 3 cut(s) 60, 66, 74
CviQI GTAC 2 cut(s) 20, 84
DdeI CTNAG 1 cut(s) 170
DraIII CACNNNGTG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 96
Eco72I CACGTG 1 cut(s) 163
FaeI CATG 2 cut(s) 20, 119
FaiI YATR 2 cut(s) 18, 117
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 2 cut(s) 16, 115
FspBI CTAG 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 2 cut(s) 20, 119
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaI GTTAAC 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 133, 152
Hpy8I GTNNAC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 162, 185
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 2 cut(s) 162, 185
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 2 cut(s) 20, 119
KspAI GTTAAC 1 cut(s) 199
LpnPI CCDG 5 cut(s) 46, 88, 112, 157, 224
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 162, 185
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 1 cut(s) 139
MluCI AATT 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 1 cut(s) 71
MseI TTAA 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 172
NlaIII CATG 2 cut(s) 20, 119
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 2 cut(s) 20, 119
PciI ACATGT 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
Ppu21I YACGTR 1 cut(s) 163
PscI ACATGT 1 cut(s) 16
PspCI CACGTG 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 96
RsaI GTAC 2 cut(s) 21, 85
RsaNI GTAC 2 cut(s) 20, 84
SaqAI TTAA 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 96
SetI ASST 4 cut(s) 62, 144, 165, 188
SinI GGWCC 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 220
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 2 cut(s) 165, 188
TasI AATT 1 cut(s) 220
TatI WGTACW 2 cut(s) 19, 83
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 3 cut(s) 51, 199, 218
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspRI CASTG 3 cut(s) 51, 199, 218
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 220
XceI RCATGY 2 cut(s) 20, 119
XspI CTAG 1 cut(s) 41
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.