Rroxscaffold_4G00315020

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000217
Physical Location & Seq
Forward (+)
39221810 .. 39222424
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315020.1

Sequence Viewer

Length: 510 bp
ATGGTCGGTTTCACTGCAAATGTCACCAATATCCCCATATATGCCCATCTGAGAATTGAAGAGATTGTTAAGTCAAGAATTGTGTATGATGTCAGTTATCACCTCACGCAAGCAAGGATCTACAATTATGAAAACGAGGTCGAAATTGCCATTGGAGAGGCCGTGAATTTGACCCAAGAAACCACTGGGATGACATTTAAGCTATCATACAAAAGGACCAAGAGCACGTGTTGGAATGATGCCAAAACCATGTCTATCAAGTCTGGCGGCGTTAAAACAACAATGCAAGCTGGTGTTCCGAGCCTGTGCAGAGTTGACGTGCCGGCAATGACTAAGTTGAATGTGAGTCTTGTGGCGAAAAAAGCTTCATATGAAGTTCCATTTAACTATTCTCGCCGCGACACTCGTACCAACGGTCAAATAAGCAACGACAACGACATGGATGATGGCATTTACATTGGGTTCAATTTCTATAACTTCAAGTACAACATCAAGCAAAAAAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

169

Amino Acids

19.22

Weight (kDa)

9.13

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 399
AciI CCGC 2 cut(s) 267, 397
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 166
AcvI CACGTG 1 cut(s) 228
AfaI GTAC 2 cut(s) 409, 485
AflIII ACRYGT 1 cut(s) 227
AgsI TTSAA 4 cut(s) 59, 340, 466, 481
AjiI CACGTC 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 3 cut(s) 202, 290, 365
AluI AGCT 3 cut(s) 202, 290, 365
Alw21I GWGCWC 1 cut(s) 227
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 16, 92
AvaII GGWCC 1 cut(s) 216
BaeI ACNNNNGTAYC 2 cut(s) 391, 424
BbrPI CACGTG 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 227
BccI CCATC 2 cut(s) 54, 440
BceAI ACGGC 1 cut(s) 146
BisI GCNGC 2 cut(s) 268, 397
BlsI GCNGC 2 cut(s) 269, 398
Bme18I GGWCC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 333
BseGI GGATG 2 cut(s) 195, 448
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 323
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 2 cut(s) 267, 397
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 1 cut(s) 399
BspPI GGATC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 322
BssMI GATC 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 111, 288, 324
BstDEI CTNAG 2 cut(s) 50, 333
BstF5I GGATG 2 cut(s) 195, 448
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstUI CGCG 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 1 cut(s) 161
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 195, 448
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 183
Cac8I GCNNGC 3 cut(s) 111, 288, 324
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 408, 484
CviAII CATG 2 cut(s) 250, 439
CviJI RGCY 5 cut(s) 161, 202, 290, 303, 365
CviKI_1 RGCY 5 cut(s) 161, 202, 290, 303, 365
CviQI GTAC 2 cut(s) 408, 484
DdeI CTNAG 2 cut(s) 50, 333
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 216
Eco72I CACGTG 1 cut(s) 228
FaeI CATG 2 cut(s) 253, 442
FatI CATG 2 cut(s) 249, 438
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 268, 397
FokI GGATG 2 cut(s) 202, 455
Fsp4HI GCNGC 2 cut(s) 268, 397
GluI GCNGC 2 cut(s) 268, 397
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 323
Hin1II CATG 2 cut(s) 253, 442
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 1 cut(s) 346
HpaII CCGG 1 cut(s) 323
HphI GGTGA 2 cut(s) 16, 92
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 51, 300
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 2 cut(s) 227, 318
HpyCH4V TGCA 3 cut(s) 17, 286, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 2 cut(s) 50, 333
HpySE526I ACGT 2 cut(s) 227, 318
Hsp92II CATG 2 cut(s) 253, 442
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 171, 249, 276, 317, 336
LweI GCATC 1 cut(s) 229
MaeII ACGT 2 cut(s) 227, 318
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 1 cut(s) 71
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 6 cut(s) 54, 78, 124, 144, 166, 466
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 3 cut(s) 113, 130, 151
MroNI GCCGGC 1 cut(s) 322
MseI TTAA 4 cut(s) 69, 198, 273, 384
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 362
NaeI GCCGGC 1 cut(s) 324
NdeI CATATG 1 cut(s) 370
NdeII GATC 1 cut(s) 117
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 2 cut(s) 253, 442
NmuCI GTSAC 1 cut(s) 22
PdiI GCCGGC 1 cut(s) 324
PkrI GCNGC 2 cut(s) 269, 398
PleI GAGTC 1 cut(s) 354
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
PpsI GAGTC 1 cut(s) 354
Ppu21I YACGTR 1 cut(s) 228
PspCI CACGTG 1 cut(s) 228
PspPI GGNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 2 cut(s) 409, 485
RsaNI GTAC 2 cut(s) 408, 484
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 4 cut(s) 69, 198, 273, 384
SatI GCNGC 2 cut(s) 268, 397
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 355
SduI GDGCHC 1 cut(s) 227
SetI ASST 7 cut(s) 105, 141, 204, 230, 292, 321, 367
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 6 cut(s) 54, 78, 124, 144, 166, 466
SsiI CCGC 2 cut(s) 267, 397
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 2 cut(s) 230, 321
TaqI TCGA 1 cut(s) 141
TasI AATT 6 cut(s) 54, 78, 124, 144, 166, 466
TatI WGTACW 1 cut(s) 483
TauI GCSGC 2 cut(s) 270, 399
Tru1I TTAA 4 cut(s) 69, 198, 273, 384
Tru9I TTAA 4 cut(s) 69, 198, 273, 384
TscAI CASTG 2 cut(s) 19, 190
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 144, 357, 387
TspRI CASTG 2 cut(s) 19, 190
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.