MD02G1240000.v1.1

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000217
Physical Location & Seq
Forward (+)
28852956 .. 28854545
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1240000.v1.1.491

Sequence Viewer

Length: 1590 bp
ATGGCATTGCCAAGGTTTGTGGTCGTGAAATCAAACCATAACAGAAAATTCTTACGCTGCATGAAAGGTGATGGAGAGGAGAATGCGCCAGCCGGGTTTCTCAAATTCTCCGAAGAGGAGGCCAGCAGCCATTACGCAAAGTACGAAGTGGAGATGGCAAAGAATAGAGGGAATAAAGGGCTAGTCCACATTAGATGTTGTTACAACAATAAATACTGGGTAAGCGTGACGGGAACGCATATGTTTGACAACCAGGTTTTGATTGTTGCAGGGGCAGACGAACCCGAGGAAGACCAATCAAAACCCTCATGTACCCTCTTCGAAACCGTCTACGTGGATCCGATAGACAAGGACGATGATAATAATAATAATAATAATAATAATGGTAACAATAATGCCGACAATAATGATGGTGATCTTGAAGATGATAGTCAGGTGGTCCAATTTCGGCATGTCCACCTCGGACGTTATACCACCTTACACAACAGCTCGGACGCCTTAGTACTTTATGGAAGCTCAAACGCCGCAGCAGATGATCCTAACAACGTAGAGTCGCAAGATGTGTGCACAGTCGTGAATTGGGAATCGCTGGTGATATTGCCAAAACACGTGGTGTTCAAGGGAGACGAAGGTAGCTACGTCACAGCCCATATGGCTGACCGCAACCATATGGACCACGGAGATGACGAAGAAGATGGGCCGTATCTCCATTTTGATGGTCATGACGTATGTGATCCGGCTGCGACGCATGAGATCTTCAGAAACCCTGACGGAACCTTACAAATAAAAAACAGTTTCTTTGAAAGATATTGGAGAGTCGCCAAAGACGAGTGGATCTGGGCGGACGCGTTTAACCCAACCGCCGGAGACAAGAACTACAAAGACACGTTGTATCGGGCGTTTAAGCTTTCTGACAAAGTCATAGCTCTCATGAACGTAGGGAACAACAAGTACTGCAAGAGATACACATGGGGGATTACTGGTATGTGCGCCAACGTGTCTAATCTCTCCATTTATTCACACCTCCACATTGAAGAGCCTGTTAAGTCAAGGACCATCTACAATGTCAATTACCGCCTCGCCCATGCCAGGATCTACAATTACCAAAATGACACAGAAATCGCAGCCGGAGAAGCCGTGAACTTCACCCAAGAAACCACAAACGTACTACTCAAGTTGTTCTACAAGAAGTCGAATATTTGCAGTTGGAATGATATCAGTAGAGTCTATTCCATAAAACCAAAAACCAATGTTGAAGCCGATGGCGTTCCGCGGATCACGGGAGGTGACAACGGAGCGGTGAAGTTTGAGATTTCAGGGGGTGAATTTAAAGGAGAGGTCCAGTGGGGAGAAACCGAGACGTCCGAAACTCAAGTGGAGACTGTTTGCATGGTTGGTGTGCCGGCAATGAGTGTGGTGAAGGTGAGGCTGCTGGCCGCCAAGGTTTCATGTGATGTTCCCTTCTCCTACTCTCGTCGGGACACTGGTATCAACGGTCAAGTGCATGTTACTGATGACTTGGACGATGGTTTTTACAGTTGCATCAACGCCTTCAACTTCAAGTACGATATCAATGAAGAAAGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

530

Amino Acids

59.7

Weight (kDa)

5.1

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 2 - 114 1.7e-15 Agglutinin domain
Agglutinin PF07468 230 - 327 7.3e-13 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1364
AccBSI CCGCTC 1 cut(s) 1298
AccI GTMKAC 1 cut(s) 330
AccII CGCG 2 cut(s) 848, 1273
AciI CCGC 9 cut(s) 525, 661, 842, 861, 1075, 1271, 1273, 1298, 1437
AclWI GGATC 7 cut(s) 332, 345, 530, 728, 842, 1100, 1283
AcoI YGGCCR 1 cut(s) 1434
AcsI RAATTY 3 cut(s) 47, 104, 1325
AcuI CTGAAG 1 cut(s) 742
AcvI CACGTG 1 cut(s) 610
AcyI GRCGYC 2 cut(s) 495, 1361
AdeI CACNNNGTG 1 cut(s) 613
AfaI GTAC 6 cut(s) 143, 313, 504, 953, 1167, 1565
AfiI CCNNNNNNNGG 2 cut(s) 863, 1089
AflIII ACRYGT 4 cut(s) 607, 846, 885, 996
AgsI TTSAA 7 cut(s) 422, 619, 803, 1034, 1256, 1555, 1561
AjnI CCWGG 2 cut(s) 252, 1088
AleI CACNNNNGTG 1 cut(s) 572
AluBI AGCT 5 cut(s) 489, 516, 636, 907, 926
AluI AGCT 5 cut(s) 489, 516, 636, 907, 926
Alw21I GWGCWC 1 cut(s) 569
Alw26I GTCTC 4 cut(s) 618, 861, 1352, 1373
Alw44I GTGCAC 1 cut(s) 565
AlwI GGATC 7 cut(s) 332, 345, 530, 728, 842, 1100, 1283
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 3 cut(s) 120, 698, 1434
ApaLI GTGCAC 1 cut(s) 565
ApeKI GCWGC 6 cut(s) 57, 126, 527, 740, 1124, 1429
ApoI RAATTY 3 cut(s) 47, 104, 1325
AspLEI GCGC 2 cut(s) 88, 992
AspS9I GGNCC 5 cut(s) 439, 673, 698, 1053, 1339
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 9 cut(s) 80, 425, 604, 1138, 1298, 1312, 1334, 1429, 1435
AsuII TTCGAA 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 4 cut(s) 439, 673, 1053, 1339
BaeGI GKGCMC 1 cut(s) 569
BaeI ACNNNNGTAYC 2 cut(s) 1471, 1504
BamHI GGATCC 1 cut(s) 337
BbrPI CACGTG 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 6 cut(s) 44, 138, 539, 727, 1136, 1416
BccI CCATC 8 cut(s) 65, 148, 404, 689, 710, 1064, 1256, 1520
BceAI ACGGC 2 cut(s) 685, 1121
BciT130I CCWGG 2 cut(s) 254, 1090
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 4 cut(s) 618, 861, 1352, 1373
BfaI CTAG 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 653
BglII AGATCT 1 cut(s) 753
BisI GCNGC 8 cut(s) 58, 127, 525, 528, 741, 1125, 1430, 1437
BlsI GCNGC 8 cut(s) 59, 128, 526, 529, 742, 1126, 1431, 1438
BmcAI AGTACT 2 cut(s) 504, 953
Bme1390I CCNGG 3 cut(s) 94, 254, 1090
Bme18I GGWCC 4 cut(s) 439, 673, 1053, 1339
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 5 cut(s) 439, 673, 698, 1053, 1339
BmiI GGNNCC 2 cut(s) 339, 775
BmrFI CCNGG 3 cut(s) 94, 254, 1090
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 1551
BmuI ACTGGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 1157, 1356
BpuMI CCSGG 1 cut(s) 94
BsaAI YACGTR 2 cut(s) 334, 610
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 2 cut(s) 495, 1361
BsaJI CCNNGG 6 cut(s) 11, 285, 460, 676, 1271, 1440
BsaXI ACNNNNNCTCC 2 cut(s) 1122, 1152
Bsc4I CCNNNNNNNGG 2 cut(s) 863, 1089
Bse118I RCCGGY 1 cut(s) 1402
Bse1I ACTGG 4 cut(s) 221, 985, 1342, 1489
Bse3DI GCAATG 2 cut(s) 5, 1413
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 2 cut(s) 254, 1090
BseDI CCNNGG 6 cut(s) 11, 285, 460, 676, 1271, 1440
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 863, 1089
BseMI GCAATG 2 cut(s) 5, 1413
BseNI ACTGG 4 cut(s) 221, 985, 1342, 1489
BseRI GAGGAG 2 cut(s) 92, 131
BseSI GKGCMC 1 cut(s) 569
BseXI GCAGC 6 cut(s) 44, 138, 539, 727, 1136, 1416
Bsh1236I CGCG 2 cut(s) 848, 1273
BshFI GGCC 3 cut(s) 122, 700, 1436
BsiHKAI GWGCWC 1 cut(s) 569
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 5 cut(s) 93, 737, 864, 1128, 1403
BslFI GGGAC 1 cut(s) 1493
BslI CCNNNNNNNGG 2 cut(s) 863, 1089
BsmAI GTCTC 4 cut(s) 618, 861, 1352, 1373
BsmBI CGTCTC 2 cut(s) 618, 1352
BsmFI GGGAC 1 cut(s) 1493
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 3 cut(s) 122, 700, 1436
BsoBI CYCGRG 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 569
Bsp143I GATC 8 cut(s) 337, 415, 535, 733, 753, 834, 1092, 1275
BspACI CCGC 9 cut(s) 525, 661, 842, 861, 1075, 1271, 1273, 1298, 1437
BspANI GGCC 3 cut(s) 122, 700, 1436
BspFNI CGCG 2 cut(s) 848, 1273
BspHI TCATGA 2 cut(s) 721, 930
BspLI GGNNCC 2 cut(s) 339, 775
BspPI GGATC 7 cut(s) 332, 345, 530, 728, 842, 1100, 1283
BspQI GCTCTTC 1 cut(s) 1029
BspT104I TTCGAA 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 1298
BsrDI GCAATG 2 cut(s) 5, 1413
BsrFI RCCGGY 1 cut(s) 1402
BsrI ACTGG 4 cut(s) 221, 985, 1342, 1489
BssAI RCCGGY 1 cut(s) 1402
BssECI CCNNGG 6 cut(s) 11, 285, 460, 676, 1271, 1440
BssMI GATC 8 cut(s) 337, 415, 535, 733, 753, 834, 1092, 1275
BssNI GRCGYC 2 cut(s) 495, 1361
BssT1I CCWWGG 2 cut(s) 11, 1440
Bst2UI CCWGG 2 cut(s) 254, 1090
Bst4CI ACNGT 6 cut(s) 328, 571, 794, 1384, 1496, 1538
Bst6I CTCTTC 3 cut(s) 108, 323, 1029
BstACI GRCGYC 2 cut(s) 495, 1361
BstBAI YACGTR 2 cut(s) 334, 610
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 4 cut(s) 90, 124, 1404, 1434
BstDEI CTNAG 1 cut(s) 499
BstDSI CCRYGG 2 cut(s) 676, 1271
BstFNI CGCG 2 cut(s) 848, 1273
BstHHI GCGC 2 cut(s) 88, 992
BstKTI GATC 8 cut(s) 340, 418, 538, 736, 756, 837, 1095, 1278
BstMAI GTCTC 4 cut(s) 618, 861, 1352, 1373
BstMBI GATC 8 cut(s) 337, 415, 535, 733, 753, 834, 1092, 1275
BstMWI GCNNNNNNNGC 2 cut(s) 653, 1133
BstNI CCWGG 2 cut(s) 254, 1090
BstNSI RCATGY 2 cut(s) 455, 1508
BstSCI CCNGG 3 cut(s) 92, 252, 1088
BstSLI GKGCMC 1 cut(s) 569
BstUI CGCG 2 cut(s) 848, 1273
BstV1I GCAGC 6 cut(s) 44, 138, 539, 727, 1136, 1416
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 4 cut(s) 337, 753, 834, 1092
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 4 cut(s) 337, 753, 834, 1092
BsuRI GGCC 3 cut(s) 122, 700, 1436
BtgI CCRYGG 2 cut(s) 676, 1271
BtsIMutI CAGTG 2 cut(s) 1349, 1482
Cac8I GCNNGC 4 cut(s) 90, 124, 1404, 1434
CciI TCATGA 2 cut(s) 721, 930
CfoI GCGC 2 cut(s) 88, 992
Cfr10I RCCGGY 1 cut(s) 1402
Cfr13I GGNCC 5 cut(s) 439, 673, 698, 1053, 1339
Cfr42I CCGCGG 1 cut(s) 1274
CseI GACGC 3 cut(s) 503, 754, 854
CsiI ACCWGGT 1 cut(s) 252
Csp6I GTAC 6 cut(s) 142, 312, 503, 952, 1166, 1564
CspCI CAANNNNNGTGG 5 cut(s) 35, 591, 626, 1395, 1430
CviQI GTAC 6 cut(s) 142, 312, 503, 952, 1166, 1564
DdeI CTNAG 1 cut(s) 499
DpnI GATC 8 cut(s) 339, 417, 537, 735, 755, 836, 1094, 1277
DpnII GATC 8 cut(s) 337, 415, 535, 733, 753, 834, 1092, 1275
DraI TTTAAA 1 cut(s) 1330
DraIII CACNNNGTG 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 1434
Eam1104I CTCTTC 3 cut(s) 108, 323, 1029
EarI CTCTTC 3 cut(s) 108, 323, 1029
EciI GGCGGA 1 cut(s) 857
Eco130I CCWWGG 2 cut(s) 11, 1440
Eco32I GATATC 2 cut(s) 1216, 1570
Eco47I GGWCC 4 cut(s) 439, 673, 1053, 1339
Eco57I CTGAAG 1 cut(s) 742
Eco72I CACGTG 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 252, 1088
EcoRV GATATC 2 cut(s) 1216, 1570
EcoT14I CCWWGG 2 cut(s) 11, 1440
ErhI CCWWGG 2 cut(s) 11, 1440
Esp3I CGTCTC 2 cut(s) 618, 1352
FaqI GGGAC 1 cut(s) 1493
FauNDI CATATG 3 cut(s) 240, 651, 669
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 8 cut(s) 58, 127, 525, 528, 741, 1125, 1430, 1437
Fsp4HI GCNGC 8 cut(s) 58, 127, 525, 528, 741, 1125, 1430, 1437
FspBI CTAG 1 cut(s) 182
GlaI GCGC 2 cut(s) 87, 991
GluI GCNGC 8 cut(s) 58, 127, 525, 528, 741, 1125, 1430, 1437
HaeIII GGCC 3 cut(s) 122, 700, 1436
HapII CCGG 5 cut(s) 93, 737, 864, 1128, 1403
HgaI GACGC 3 cut(s) 503, 754, 854
HhaI GCGC 2 cut(s) 88, 992
Hin1I GRCGYC 2 cut(s) 495, 1361
Hin6I GCGC 2 cut(s) 86, 990
HinP1I GCGC 2 cut(s) 86, 990
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 4 cut(s) 551, 584, 816, 1224
HpaII CCGG 5 cut(s) 93, 737, 864, 1128, 1403
HphI GGTGA 9 cut(s) 80, 425, 604, 1138, 1298, 1312, 1334, 1429, 1435
Hpy166II GTNNAC 5 cut(s) 187, 331, 457, 567, 1141
Hpy188I TCNGA 7 cut(s) 112, 342, 464, 493, 761, 913, 1366
Hpy188III TCNNGA 6 cut(s) 25, 419, 574, 722, 931, 1478
Hpy8I GTNNAC 5 cut(s) 187, 331, 457, 567, 1141
Hpy99I CGWCG 2 cut(s) 748, 1479
HpyAV CCTTC 4 cut(s) 623, 1414, 1471, 1561
HpyCH4III ACNGT 6 cut(s) 328, 571, 794, 1384, 1496, 1538
HpyCH4V TGCA 8 cut(s) 60, 269, 567, 957, 1203, 1389, 1504, 1542
HpyF10VI GCNNNNNNNGC 2 cut(s) 653, 1133
HpyF3I CTNAG 1 cut(s) 499
Hsp92I GRCGYC 2 cut(s) 495, 1361
HspAI GCGC 2 cut(s) 86, 990
KroI GCCGGC 1 cut(s) 1402
KroNI GCCGGC 1 cut(s) 1404
KspI CCGCGG 1 cut(s) 1274
Kzo9I GATC 8 cut(s) 337, 415, 535, 733, 753, 834, 1092, 1275
LguI GCTCTTC 1 cut(s) 1029
LmnI GCTCC 1 cut(s) 1295
Lsp1109I GCAGC 6 cut(s) 44, 138, 539, 727, 1136, 1416
LweI GCATC 1 cut(s) 1551
MabI ACCWGGT 1 cut(s) 252
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 6 cut(s) 200, 226, 386, 640, 1286, 1507
MalI GATC 8 cut(s) 339, 417, 537, 735, 755, 836, 1094, 1277
MbiI CCGCTC 1 cut(s) 1298
MboI GATC 8 cut(s) 337, 415, 535, 733, 753, 834, 1092, 1275
MboII GAAGA 9 cut(s) 125, 302, 310, 434, 701, 704, 748, 1046, 1589
MflI RGATCY 4 cut(s) 337, 753, 834, 1092
MhlI GDGCHC 1 cut(s) 569
MluCI AATT 7 cut(s) 47, 104, 443, 577, 1069, 1099, 1325
MluI ACGCGT 1 cut(s) 846
MlyI GAGTC 3 cut(s) 560, 825, 1233
MmeI TCCRAC 1 cut(s) 1187
MroNI GCCGGC 1 cut(s) 1402
MseI TTAA 4 cut(s) 852, 903, 1044, 1329
MslI CAYNNNNRTG 3 cut(s) 572, 681, 714
MspA1I CMGCKG 1 cut(s) 1273
MspI CCGG 5 cut(s) 93, 737, 864, 1128, 1403
MspR9I CCNGG 3 cut(s) 94, 254, 1090
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 2 cut(s) 254, 1090
MvnI CGCG 2 cut(s) 848, 1273
MwoI GCNNNNNNNGC 2 cut(s) 653, 1133
NaeI GCCGGC 1 cut(s) 1404
NciI CCSGG 1 cut(s) 94
NdeI CATATG 3 cut(s) 240, 651, 669
NdeII GATC 8 cut(s) 337, 415, 535, 733, 753, 834, 1092, 1275
NgoMIV GCCGGC 1 cut(s) 1402
NlaIV GGNNCC 2 cut(s) 339, 775
NmuCI GTSAC 3 cut(s) 226, 640, 1286
NspI RCATGY 2 cut(s) 455, 1508
NspV TTCGAA 1 cut(s) 321
OliI CACNNNNGTG 1 cut(s) 572
PagI TCATGA 2 cut(s) 721, 930
PciSI GCTCTTC 1 cut(s) 1029
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 684, 825
PctI GAATGC 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 1404
PfeI GAWTC 1 cut(s) 584
PflFI GACNNNGTC 1 cut(s) 917
PkrI GCNGC 8 cut(s) 59, 128, 526, 529, 742, 1126, 1431, 1438
PleI GAGTC 3 cut(s) 559, 824, 1232
PmaCI CACGTG 1 cut(s) 610
PmlI CACGTG 1 cut(s) 610
PpsI GAGTC 3 cut(s) 559, 824, 1232
Ppu21I YACGTR 2 cut(s) 334, 610
Psp6I CCWGG 2 cut(s) 252, 1088
PspCI CACGTG 1 cut(s) 610
PspGI CCWGG 2 cut(s) 252, 1088
PspN4I GGNNCC 2 cut(s) 339, 775
PspPI GGNCC 5 cut(s) 439, 673, 698, 1053, 1339
PsrI GAACNNNNNNTAC 2 cut(s) 935, 967
PsuI RGATCY 4 cut(s) 337, 753, 834, 1092
PsyI GACNNNGTC 1 cut(s) 917
RsaI GTAC 6 cut(s) 143, 313, 504, 953, 1167, 1565
RsaNI GTAC 6 cut(s) 142, 312, 503, 952, 1166, 1564
RseI CAYNNNNRTG 3 cut(s) 572, 681, 714
SacII CCGCGG 1 cut(s) 1274
SapI GCTCTTC 1 cut(s) 1029
SaqAI TTAA 4 cut(s) 852, 903, 1044, 1329
SatI GCNGC 8 cut(s) 58, 127, 525, 528, 741, 1125, 1430, 1437
Sau3AI GATC 8 cut(s) 337, 415, 535, 733, 753, 834, 1092, 1275
Sau96I GGNCC 5 cut(s) 439, 673, 698, 1053, 1339
ScaI AGTACT 2 cut(s) 504, 953
SchI GAGTC 3 cut(s) 560, 825, 1233
ScrFI CCNGG 3 cut(s) 94, 254, 1090
SduI GDGCHC 1 cut(s) 569
SexAI ACCWGGT 1 cut(s) 252
SfaNI GCATC 1 cut(s) 1551
Sfr303I CCGCGG 1 cut(s) 1274
SfuI TTCGAA 1 cut(s) 321
SgrBI CCGCGG 1 cut(s) 1274
SinI GGWCC 4 cut(s) 439, 673, 1053, 1339
SmiMI CAYNNNNRTG 3 cut(s) 572, 681, 714
SmlI CTYRAG 2 cut(s) 1172, 1371
SmoI CTYRAG 2 cut(s) 1172, 1371
Sse9I AATT 7 cut(s) 47, 104, 443, 577, 1069, 1099, 1325
SsiI CCGC 9 cut(s) 525, 661, 842, 861, 1075, 1271, 1273, 1298, 1437
SspI AATATT 1 cut(s) 1198
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 92, 252, 1088
StyI CCWWGG 2 cut(s) 11, 1440
TaaI ACNGT 6 cut(s) 328, 571, 794, 1384, 1496, 1538
TaqI TCGA 2 cut(s) 321, 1193
TasI AATT 7 cut(s) 47, 104, 443, 577, 1069, 1099, 1325
TatI WGTACW 2 cut(s) 502, 951
TauI GCSGC 2 cut(s) 527, 1439
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 4 cut(s) 852, 903, 1044, 1329
Tru9I TTAA 4 cut(s) 852, 903, 1044, 1329
TscAI CASTG 2 cut(s) 1349, 1489
TseFI GTSAC 3 cut(s) 226, 640, 1286
TseI GCWGC 6 cut(s) 57, 126, 527, 740, 1124, 1429
Tsp45I GTSAC 3 cut(s) 226, 640, 1286
TspDTI ATGAA 4 cut(s) 77, 947, 1437, 1590
TspGWI ACGGA 3 cut(s) 693, 786, 1308
TspRI CASTG 2 cut(s) 1349, 1489
Tth111I GACNNNGTC 1 cut(s) 917
VneI GTGCAC 1 cut(s) 565
VpaK11BI GGWCC 4 cut(s) 439, 673, 1053, 1339
XapI RAATTY 3 cut(s) 47, 104, 1325
XceI RCATGY 2 cut(s) 455, 1508
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 1 cut(s) 182
ZraI GACGTC 1 cut(s) 1362
ZrmI AGTACT 2 cut(s) 504, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.