Rmu_co8136580.1_g000001

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8136580.1
OG0000217
Physical Location & Seq
Reverse (-)
2 .. 337
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8136580.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
atgtcattcctattaccacccactattgcgctcagttcagcctggttcttcagtttcaacgactcctacttgatctacaggaatgattccgattccgagacgcgtggctttctcagagtcaacggatcgaatgtcttcagcccattagcaaagttcgaagtggtgacggccaatactgggacgggactagtacatattagatgctctcagaacagaaagttcctgcgaagaaaatttgagagtgatgtgcaccttactccggaggctgatgaaccagaggaggaccaatccaaatggtcgtgtacattatttgagcctcaagtagctgaagatggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

112

Amino Acids

12.74

Weight (kDa)

4.92

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 103
AccIII TCCGGA 1 cut(s) 259
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 34, 121
AfaI GTAC 2 cut(s) 192, 304
AfiI CCNNNNNNNGG 2 cut(s) 177, 259
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 1 cut(s) 58
AhlI ACTAGT 1 cut(s) 187
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 92
Alw44I GTGCAC 1 cut(s) 248
AlwI GGATC 1 cut(s) 133
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 1 cut(s) 168
ApaLI GTGCAC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 156
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 92
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 259
Bse1I ACTGG 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 177, 259
BseMII CTCAG 3 cut(s) 46, 127, 221
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 2 cut(s) 193, 198
BslI CCNNNNNNNGG 2 cut(s) 177, 259
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 193, 198
BsnI GGCC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 252
Bsp13I TCCGGA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 2 cut(s) 72, 125
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 3 cut(s) 45, 126, 220
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 1 cut(s) 103
BspPI GGATC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 302
BsrI ACTGG 1 cut(s) 181
BssMI GATC 2 cut(s) 72, 125
Bst2UI CCWGG 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 156
BstDEI CTNAG 3 cut(s) 32, 113, 207
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 75, 128
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 72, 125
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 170
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 283
CseI GACGC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 191, 303
CviJI RGCY 7 cut(s) 41, 108, 141, 170, 266, 316, 326
CviKI_1 RGCY 7 cut(s) 41, 108, 141, 170, 266, 316, 326
CviQI GTAC 2 cut(s) 191, 303
DdeI CTNAG 3 cut(s) 32, 113, 207
DpnI GATC 2 cut(s) 74, 127
DpnII GATC 2 cut(s) 72, 125
EaeI YGGCCR 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 34, 121
EcoRII CCWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 1 cut(s) 195
FaqI GGGAC 2 cut(s) 193, 198
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 260
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 4 cut(s) 62, 86, 92, 117
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 3 cut(s) 121, 250, 303
Hpy188I TCNGA 4 cut(s) 91, 97, 116, 210
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 3 cut(s) 121, 250, 303
HpyCH4V TGCA 1 cut(s) 250
HpyF3I CTNAG 3 cut(s) 32, 113, 207
HspAI GCGC 1 cut(s) 29
Kpn2I TCCGGA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 72, 125
LpnPI CCDG 7 cut(s) 28, 55, 64, 162, 236, 273, 288
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 74, 127
MboI GATC 2 cut(s) 72, 125
MboII GAAGA 3 cut(s) 40, 127, 240
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 233
MluI ACGCGT 1 cut(s) 101
MlyI GAGTC 2 cut(s) 56, 126
MnlI CCTC 4 cut(s) 256, 271, 274, 327
MroI TCCGGA 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 134
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 103
NdeII GATC 2 cut(s) 72, 125
NmuCI GTSAC 1 cut(s) 163
NspV TTCGAA 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 86, 92
PleI GAGTC 2 cut(s) 56, 125
PpsI GAGTC 2 cut(s) 56, 125
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspPI GGNCC 1 cut(s) 283
RsaI GTAC 2 cut(s) 192, 304
RsaNI GTAC 2 cut(s) 191, 303
Sau3AI GATC 2 cut(s) 72, 125
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 2 cut(s) 56, 126
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 252
SetI ASST 2 cut(s) 255, 328
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 1 cut(s) 233
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 41
TaqI TCGA 2 cut(s) 128, 156
TasI AATT 1 cut(s) 233
TatI WGTACW 2 cut(s) 190, 302
TfiI GAWTC 2 cut(s) 86, 92
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 138
VneI GTGCAC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.