Rorug01G0129200

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000217
Physical Location & Seq
Reverse (-)
21983651 .. 21985121
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0129200.1

Sequence Viewer

Length: 609 bp
ATGGCGGTGGCGATCCAGAAGAAAACAGAGTCGCTCCAGTACTGGAGGGATTTCTTTGCCACTGCAAACAACTCCACCATTTTCGATATTCTCGACCACGCCATCACCGTCGCCGCCTCTGATTTCCCGGAGGAGTTCACTCGCCAGATGACTCGAATTCTCGATTCGATTCAACGTTTGGGTTTGGGTTCGGATCTAGGGTTTTGTGCGGGTGCTGCATCTGAAAGTACTGGGTCCGAAATTGTTTTATTAATGCTAAGAAGGCAAGGAGATGGATTTTCAATCAACACTGCTGGAAGAACTTCAGATGAAGCGAAATTGATCAAGCCCTGTTCTCATCTGATCAAGCCCCCACCCTGTGTTGGTGATCAAGCTAAATCGATCAAGCAAAAGCCGTGTTTGGATGAAGCGGCAATTGAGGCAAAGCTTCAGGCCACAAAGAGAAAGCTTCATGATCGATATCAAGAAATTGAGAACAATAAGAGGCAGAGGAGGATACAAGTCTTAAACCATCTTCCCAAGCAAGACTTCAAGATTCGATGCCCTGCTGCCACTGCTAAACCCAAACTTGGAAACCATTGGAAACCAGTACTAAAAATCAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

202

Amino Acids

22.65

Weight (kDa)

9.53

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 114, 209, 410
AclI AACGTT 1 cut(s) 175
AclWI GGATC 2 cut(s) 7, 201
AcsI RAATTY 1 cut(s) 156
AcuI CTGAAG 2 cut(s) 288, 413
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 3 cut(s) 41, 229, 591
AfiI CCNNNNNNNGG 2 cut(s) 362, 569
AgsI TTSAA 3 cut(s) 173, 282, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 3 cut(s) 374, 427, 448
AluI AGCT 3 cut(s) 374, 427, 448
AlwI GGATC 2 cut(s) 7, 201
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 2 cut(s) 215, 548
ApoI RAATTY 1 cut(s) 156
AseI ATTAAT 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 97, 377
AvaII GGWCC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 202, 535
BccI CCATC 3 cut(s) 110, 266, 519
BceAI ACGGC 1 cut(s) 379
BciVI GTATCC 1 cut(s) 489
BclI TGATCA 3 cut(s) 321, 342, 367
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 1 cut(s) 197
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 4 cut(s) 114, 216, 411, 549
BlsI GCNGC 4 cut(s) 115, 217, 412, 550
BmcAI AGTACT 3 cut(s) 41, 229, 591
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 227, 530
BmuI ACTGGG 1 cut(s) 240
BpmI CTGGAG 2 cut(s) 20, 64
BpuMI CCSGG 1 cut(s) 128
Bsa29I ATCGAT 2 cut(s) 380, 457
BsaBI GATNNNNATC 1 cut(s) 459
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 569
Bse1I ACTGG 4 cut(s) 37, 47, 235, 587
Bse8I GATNNNNATC 1 cut(s) 459
BseCI ATCGAT 2 cut(s) 380, 457
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 362, 569
BseNI ACTGG 4 cut(s) 37, 47, 235, 587
BseRI GAGGAG 2 cut(s) 146, 505
BseXI GCAGC 2 cut(s) 202, 535
BshFI GGCC 1 cut(s) 434
BshVI ATCGAT 2 cut(s) 380, 457
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 362, 569
BsnI GGCC 1 cut(s) 434
Bsp143I GATC 7 cut(s) 12, 193, 321, 342, 367, 381, 454
BspACI CCGC 4 cut(s) 5, 114, 209, 410
BspANI GGCC 1 cut(s) 434
BspDI ATCGAT 2 cut(s) 380, 457
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 2 cut(s) 7, 201
BsrI ACTGG 4 cut(s) 37, 47, 235, 587
BssMI GATC 7 cut(s) 12, 193, 321, 342, 367, 381, 454
Bst4CI ACNGT 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 7 cut(s) 15, 196, 324, 345, 370, 384, 457
BstMBI GATC 7 cut(s) 12, 193, 321, 342, 367, 381, 454
BstMWI GCNNNNNNNGC 4 cut(s) 215, 262, 419, 554
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 202, 535
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
Bsu15I ATCGAT 2 cut(s) 380, 457
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 1 cut(s) 434
BsuTUI ATCGAT 2 cut(s) 380, 457
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 3 cut(s) 60, 288, 552
BtsIMutI CAGTG 3 cut(s) 60, 288, 552
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 234
ClaI ATCGAT 2 cut(s) 380, 457
Csp6I GTAC 3 cut(s) 40, 228, 590
CviAII CATG 1 cut(s) 452
CviJI RGCY 7 cut(s) 328, 349, 374, 394, 427, 434, 448
CviKI_1 RGCY 7 cut(s) 328, 349, 374, 394, 427, 434, 448
CviQI GTAC 3 cut(s) 40, 228, 590
DdeI CTNAG 1 cut(s) 257
DpnI GATC 7 cut(s) 14, 195, 323, 344, 369, 383, 456
DpnII GATC 7 cut(s) 12, 193, 321, 342, 367, 381, 454
DraIII CACNNNGTG 1 cut(s) 359
Eco32I GATATC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 2 cut(s) 288, 413
EcoRI GAATTC 1 cut(s) 156
EcoRV GATATC 1 cut(s) 461
FaeI CATG 1 cut(s) 455
FaiI YATR 2 cut(s) 453, 607
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 1 cut(s) 451
FauI CCCGC 1 cut(s) 202
FbaI TGATCA 3 cut(s) 321, 342, 367
Fnu4HI GCNGC 4 cut(s) 114, 216, 411, 549
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 4 cut(s) 114, 216, 411, 549
FspBI CTAG 1 cut(s) 197
GluI GCNGC 4 cut(s) 114, 216, 411, 549
GsuI CTGGAG 2 cut(s) 20, 64
HaeIII GGCC 1 cut(s) 434
HapII CCGG 1 cut(s) 128
Hin1II CATG 1 cut(s) 455
HindIII AAGCTT 2 cut(s) 425, 446
HinfI GANTC 5 cut(s) 29, 151, 164, 169, 535
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 97, 377
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 7 cut(s) 121, 193, 223, 238, 307, 342, 602
Hpy188III TCNNGA 6 cut(s) 16, 92, 161, 452, 464, 532
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 65, 218
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 262, 419, 554
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 455
Ksp22I TGATCA 3 cut(s) 321, 342, 367
Kzo9I GATC 7 cut(s) 12, 193, 321, 342, 367, 381, 454
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 2 cut(s) 202, 535
LweI GCATC 2 cut(s) 227, 530
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 175
MalI GATC 7 cut(s) 14, 195, 323, 344, 369, 383, 456
MboI GATC 7 cut(s) 12, 193, 321, 342, 367, 381, 454
MboII GAAGA 3 cut(s) 31, 309, 506
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 193
MluCI AATT 5 cut(s) 156, 240, 317, 414, 468
MlyI GAGTC 2 cut(s) 38, 145
MnlI CCTC 7 cut(s) 39, 124, 127, 412, 477, 483, 486
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 2 cut(s) 251, 506
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 414
MwoI GCNNNNNNNGC 4 cut(s) 215, 262, 419, 554
NciI CCSGG 1 cut(s) 128
NdeII GATC 7 cut(s) 12, 193, 321, 342, 367, 381, 454
NlaIII CATG 1 cut(s) 455
NlaIV GGNNCC 1 cut(s) 235
PagI TCATGA 1 cut(s) 451
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 105
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 3 cut(s) 164, 169, 535
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 4 cut(s) 115, 217, 412, 550
PleI GAGTC 2 cut(s) 37, 145
PpsI GAGTC 2 cut(s) 37, 145
PshBI ATTAAT 1 cut(s) 251
Psp1406I AACGTT 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 41, 229, 591
RsaNI GTAC 3 cut(s) 40, 228, 590
SaqAI TTAA 2 cut(s) 251, 506
SatI GCNGC 4 cut(s) 114, 216, 411, 549
Sau3AI GATC 7 cut(s) 12, 193, 321, 342, 367, 381, 454
Sau96I GGNCC 1 cut(s) 234
ScaI AGTACT 3 cut(s) 41, 229, 591
SchI GAGTC 2 cut(s) 38, 145
ScrFI CCNGG 1 cut(s) 128
SetI ASST 4 cut(s) 178, 376, 429, 450
SfaNI GCATC 2 cut(s) 227, 530
SinI GGWCC 1 cut(s) 234
Sse9I AATT 5 cut(s) 156, 240, 317, 414, 468
SsiI CCGC 4 cut(s) 5, 114, 209, 410
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 178
TaqI TCGA 8 cut(s) 84, 93, 154, 162, 167, 380, 457, 538
TasI AATT 5 cut(s) 156, 240, 317, 414, 468
TatI WGTACW 3 cut(s) 39, 227, 589
TauI GCSGC 2 cut(s) 116, 413
TfiI GAWTC 3 cut(s) 164, 169, 535
Tru1I TTAA 2 cut(s) 251, 506
Tru9I TTAA 2 cut(s) 251, 506
TscAI CASTG 3 cut(s) 67, 295, 559
TseI GCWGC 2 cut(s) 215, 548
TspDTI ATGAA 3 cut(s) 324, 420, 440
TspRI CASTG 3 cut(s) 67, 295, 559
VpaK11BI GGWCC 1 cut(s) 234
VspI ATTAAT 1 cut(s) 251
XapI RAATTY 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 1 cut(s) 197
ZrmI AGTACT 3 cut(s) 41, 229, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.