MD03G1201400.v1.1

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000217
Physical Location & Seq
Forward (+)
27533845 .. 27534453
609 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1201400.v1.1.491

Sequence Viewer

Length: 609 bp
ATGGTGCCAGAATTGCCAAGGTATGTGGTGTTACAATCAAGGTACAATGCCAAATACTTGAGCTACGTAAAAGAAGATGATAAGATCCATGACTTTCTCAAATTCTCCGAAGAAGAGGTGGTGAGTCTGTATGCAAAGTTCCATGTAGAGATGGCAAAGAGTAGTGGAGCTACTAAGGGACTGGAGCACATAAGATGCTGCTACAACAATAAATACTGGGTCAGGAGGTCGCAAACCCATAATTGGATCGTCGCCGGCGCTGACGAACCCCAGGAGGATGAATCCAAATGGTCATGCACCTTGTTCGAGCCAGTCTACGTGGACGAACACAATTCTGCTCAAGACGTCCGTTTTGGTCATGTCCAGCTTCAGAACTATGCGTGCTTATGGTGCAATGACCCACCCTACAAGTCCTGCTTAATTGCAGCAAGTGGGGCCAGCAGCGAGTTGTGCGATGCATGTTTGATCGTTGATTGGGAGTCGTTGTTGGTATTGCCCAAACATATAGTTCTCAAGGGAAACAACAGGAAGTACCTCAACACAGGTGGATCTGGCAACACCCTTACTTGCAGTTCTCGTCTGATGACATTGGAGATCCCACAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

203

Amino Acids

23.16

Weight (kDa)

5.97

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 4 - 146 1.1e-27 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 315
AclWI GGATC 4 cut(s) 79, 254, 556, 589
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 2 cut(s) 44, 533
AfiI CCNNNNNNNGG 1 cut(s) 243
AjnI CCWGG 1 cut(s) 270
AleI CACNNNNGTG 1 cut(s) 604
AluBI AGCT 3 cut(s) 63, 170, 367
AluI AGCT 3 cut(s) 63, 170, 367
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 4 cut(s) 79, 254, 556, 589
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 3 cut(s) 198, 425, 441
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 133
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 185, 437, 453
BccI CCATC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 261
BisI GCNGC 3 cut(s) 199, 426, 442
BlsI GCNGC 3 cut(s) 200, 427, 443
Bme1390I CCNGG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 6, 436
BmrFI CCNGG 1 cut(s) 272
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 185, 445
BmuI ACTGGG 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 3 cut(s) 79, 324, 497
BsaAI YACGTR 2 cut(s) 67, 319
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 2 cut(s) 17, 270
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 186, 221, 311
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 17, 270
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 400
BseNI ACTGG 3 cut(s) 186, 221, 311
BseXI GCAGC 3 cut(s) 185, 437, 453
BshFI GGCC 1 cut(s) 437
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 5 cut(s) 84, 246, 465, 548, 594
BspANI GGCC 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 6, 436
BspPI GGATC 4 cut(s) 79, 254, 556, 589
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 3 cut(s) 186, 221, 311
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 17, 270
BssMI GATC 5 cut(s) 84, 246, 465, 548, 594
BssNI GRCGYC 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 603
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 345
BstBAI YACGTR 2 cut(s) 67, 319
BstC8I GCNNGC 3 cut(s) 256, 382, 439
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 5 cut(s) 87, 249, 468, 551, 597
BstMBI GATC 5 cut(s) 84, 246, 465, 548, 594
BstMWI GCNNNNNNNGC 4 cut(s) 13, 390, 434, 450
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 270
BstSNI TACGTA 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 185, 437, 453
BstX2I RGATCY 3 cut(s) 84, 548, 594
BstYI RGATCY 3 cut(s) 84, 548, 594
BsuRI GGCC 1 cut(s) 437
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 608
Cac8I GCNNGC 3 cut(s) 256, 382, 439
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 43, 532
CspCI CAANNNNNGTGG 4 cut(s) 6, 41, 526, 561
CviAII CATG 5 cut(s) 89, 143, 294, 359, 459
CviJI RGCY 5 cut(s) 63, 170, 310, 367, 437
CviKI_1 RGCY 5 cut(s) 63, 170, 310, 367, 437
CviQI GTAC 2 cut(s) 43, 532
DdeI CTNAG 1 cut(s) 174
DpnI GATC 5 cut(s) 86, 248, 467, 550, 596
DpnII GATC 5 cut(s) 84, 246, 465, 548, 594
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco105I TACGTA 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 17
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 5 cut(s) 92, 146, 297, 362, 462
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 192
FatI CATG 5 cut(s) 88, 142, 293, 358, 458
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 199, 426, 442
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 199, 426, 442
GlaI GCGC 1 cut(s) 259
GluI GCNGC 3 cut(s) 199, 426, 442
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 1 cut(s) 437
HapII CCGG 1 cut(s) 255
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 5 cut(s) 92, 146, 297, 362, 462
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 3 cut(s) 124, 281, 479
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 316, 322
Hpy188I TCNGA 3 cut(s) 109, 372, 582
Hpy188III TCNNGA 2 cut(s) 223, 341
Hpy8I GTNNAC 2 cut(s) 316, 322
Hpy99I CGWCG 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 603
HpyCH4IV ACGT 3 cut(s) 66, 318, 345
HpyCH4V TGCA 6 cut(s) 134, 297, 393, 425, 458, 570
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 390, 434, 450
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 3 cut(s) 66, 318, 345
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 5 cut(s) 92, 146, 297, 362, 462
HspAI GCGC 1 cut(s) 258
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
Kzo9I GATC 5 cut(s) 84, 246, 465, 548, 594
LmnI GCTCC 2 cut(s) 167, 184
Lsp1109I GCAGC 3 cut(s) 185, 437, 453
LweI GCATC 2 cut(s) 185, 445
MaeII ACGT 3 cut(s) 66, 318, 345
MaeIII GTNAC 1 cut(s) 30
MalI GATC 5 cut(s) 86, 248, 467, 550, 596
MboI GATC 5 cut(s) 84, 246, 465, 548, 594
MboII GAAGA 3 cut(s) 86, 122, 125
MflI RGATCY 3 cut(s) 84, 548, 594
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 5 cut(s) 11, 101, 241, 331, 420
MlyI GAGTC 2 cut(s) 133, 488
MnlI CCTC 4 cut(s) 109, 219, 268, 545
Mph1103I ATGCAT 1 cut(s) 460
MreI CGCCGGCG 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 254
MseI TTAA 1 cut(s) 419
MslI CAYNNNNRTG 1 cut(s) 604
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 4 cut(s) 13, 390, 434, 450
NaeI GCCGGC 1 cut(s) 256
NdeII GATC 5 cut(s) 84, 246, 465, 548, 594
NgoMIV GCCGGC 1 cut(s) 254
NlaIII CATG 5 cut(s) 92, 146, 297, 362, 462
NlaIV GGNNCC 2 cut(s) 6, 436
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 462
OliI CACNNNNGTG 1 cut(s) 604
PdiI GCCGGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 3 cut(s) 200, 427, 443
PleI GAGTC 2 cut(s) 132, 487
PpsI GAGTC 2 cut(s) 132, 487
Ppu21I YACGTR 2 cut(s) 67, 319
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 6, 436
PspPI GGNCC 1 cut(s) 435
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PsuI RGATCY 3 cut(s) 84, 548, 594
RsaI GTAC 2 cut(s) 44, 533
RsaNI GTAC 2 cut(s) 43, 532
RseI CAYNNNNRTG 1 cut(s) 604
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 3 cut(s) 199, 426, 442
Sau3AI GATC 5 cut(s) 84, 246, 465, 548, 594
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 2 cut(s) 133, 488
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 2 cut(s) 185, 445
SgrAI CRCCGGYG 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 604
SmlI CTYRAG 3 cut(s) 58, 339, 512
SmoI CTYRAG 3 cut(s) 58, 339, 512
SnaBI TACGTA 1 cut(s) 67
Sse9I AATT 5 cut(s) 11, 101, 241, 331, 420
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 603
TaiI ACGT 3 cut(s) 69, 321, 348
TaqI TCGA 1 cut(s) 306
TasI AATT 5 cut(s) 11, 101, 241, 331, 420
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 1 cut(s) 608
TseI GCWGC 3 cut(s) 198, 425, 441
TspDTI ATGAA 1 cut(s) 294
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 608
XapI RAATTY 1 cut(s) 101
XceI RCATGY 1 cut(s) 462
XmiI GTMKAC 1 cut(s) 315
ZraI GACGTC 1 cut(s) 346
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.