Prupe.5G237200_v2.0.a1

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000217
Physical Location & Seq
Reverse (-)
17944812 .. 17945732
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G237200.1

Sequence Viewer

Length: 477 bp
ATGGCAGAATTACCAAAGTTCATTGCTCTTAAATCATTCACGAGCGGTAAATACTTGGTCTACAAAGACCAAGCCACCGAAAAGATGCAAGATATTCTCCAATGCTCCGGAGAGGATGTTCAGAGCAAATACGCAAGGTTCAAAGTGGAGAAGGACGTAAACCTCCCCAGTCTGGTGCATATAAAATCCACCTACAACGACAAATACTGGATAACGGCAAGCCAAGACAGTTCGTGGATTGTGGCCGGGGCTGACGAGAAACAGCCAAATAAAACGCTGTGGTCATGTACACTCTTCAAGCCTGAGGTTGTGAAACCACCAGGACCGTACACCGAAGGCATATACAAGTTCCACCATGAGAAAATGGGAAACCTTTTAAAGCCAAAATCTGGAAACGAGTTCGAAAATGCCCTCATTGCAGAACCTGGAGGCCCCACCCATGAACATTTCTTCATTGTCGAAAAACTTCCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

159

Amino Acids

17.91

Weight (kDa)

6.96

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 389
AccBSI CCGCTC 1 cut(s) 45
AccI GTMKAC 1 cut(s) 60
AccIII TCCGGA 1 cut(s) 107
AciI CCGC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 243
AfaI GTAC 2 cut(s) 289, 329
AfiI CCNNNNNNNGG 2 cut(s) 172, 389
AgsI TTSAA 2 cut(s) 142, 298
AjnI CCWGG 3 cut(s) 319, 424, 469
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
AlwNI CAGNNNCTG 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 2 cut(s) 243, 430
Asp700I GAANNNNTTC 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 323, 431
AsuC2I CCSGG 1 cut(s) 247
AsuII TTCGAA 1 cut(s) 402
AvaII GGWCC 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 303
BauI CACGAG 1 cut(s) 40
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 3 cut(s) 321, 426, 471
BcnI CCSGG 1 cut(s) 247
Bme1390I CCNGG 4 cut(s) 247, 321, 426, 471
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 323, 431
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 4 cut(s) 247, 321, 426, 471
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 389
Bse1I ACTGG 2 cut(s) 168, 212
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 2 cut(s) 21, 414
BseAI TCCGGA 1 cut(s) 107
BseBI CCWGG 3 cut(s) 321, 426, 471
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 2 cut(s) 172, 389
BseMI GCAATG 2 cut(s) 21, 414
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 168, 212
BshFI GGCC 2 cut(s) 245, 432
BsiSI CCGG 2 cut(s) 108, 246
BslI CCNNNNNNNGG 2 cut(s) 172, 389
BsnI GGCC 2 cut(s) 245, 432
Bsp119I TTCGAA 1 cut(s) 402
Bsp13I TCCGGA 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 287
BspACI CCGC 1 cut(s) 45
BspANI GGCC 2 cut(s) 245, 432
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 433
BspT104I TTCGAA 1 cut(s) 402
BsrBI CCGCTC 1 cut(s) 45
BsrDI GCAATG 2 cut(s) 21, 414
BsrGI TGTACA 1 cut(s) 287
BsrI ACTGG 2 cut(s) 168, 212
BssECI CCNNGG 1 cut(s) 246
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst2UI CCWGG 3 cut(s) 321, 426, 471
Bst4CI ACNGT 2 cut(s) 230, 327
Bst6I CTCTTC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 287
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 3 cut(s) 321, 426, 471
BstSCI CCNGG 4 cut(s) 245, 319, 424, 469
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 2 cut(s) 245, 432
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 323, 431
Csp6I GTAC 2 cut(s) 288, 328
CviAII CATG 3 cut(s) 285, 356, 440
CviJI RGCY 8 cut(s) 74, 222, 245, 251, 265, 301, 382, 432
CviKI_1 RGCY 8 cut(s) 74, 222, 245, 251, 265, 301, 382, 432
CviQI GTAC 2 cut(s) 288, 328
DdeI CTNAG 1 cut(s) 303
DraI TTTAAA 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 323
Eco81I CCTNAGG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 319, 424, 469
FaeI CATG 3 cut(s) 288, 359, 443
FaiI YATR 7 cut(s) 180, 182, 286, 341, 343, 357, 441
FatI CATG 3 cut(s) 284, 355, 439
FblI GTMKAC 1 cut(s) 60
FokI GGATG 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 245, 432
HapII CCGG 2 cut(s) 108, 246
Hin1II CATG 3 cut(s) 288, 359, 443
HpaII CCGG 2 cut(s) 108, 246
Hpy166II GTNNAC 4 cut(s) 61, 160, 290, 330
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 40, 108, 390
Hpy8I GTNNAC 4 cut(s) 61, 160, 290, 330
HpyAV CCTTC 2 cut(s) 145, 329
HpyCH4III ACNGT 2 cut(s) 230, 327
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 88, 178, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 3 cut(s) 288, 359, 443
Kpn2I TCCGGA 1 cut(s) 107
LmnI GCTCC 1 cut(s) 110
LweI GCATC 1 cut(s) 75
MaeII ACGT 1 cut(s) 156
MbiI CCGCTC 1 cut(s) 45
MboII GAAGA 2 cut(s) 286, 442
MluCI AATT 1 cut(s) 8
MnlI CCTC 5 cut(s) 106, 173, 298, 422, 422
MroI TCCGGA 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 30, 377
MspI CCGG 2 cut(s) 108, 246
MspR9I CCNGG 4 cut(s) 247, 321, 426, 471
MvaI CCWGG 3 cut(s) 321, 426, 471
MwoI GCNNNNNNNGC 1 cut(s) 416
NciI CCSGG 1 cut(s) 247
NlaIII CATG 3 cut(s) 288, 359, 443
NlaIV GGNNCC 1 cut(s) 433
NspV TTCGAA 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 465
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 469
Psp6I CCWGG 3 cut(s) 319, 424, 469
PspGI CCWGG 3 cut(s) 319, 424, 469
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 2 cut(s) 323, 431
PstNI CAGNNNCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 289, 329
RsaNI GTAC 2 cut(s) 288, 328
SaqAI TTAA 2 cut(s) 30, 377
Sau96I GGNCC 2 cut(s) 323, 431
ScrFI CCNGG 4 cut(s) 247, 321, 426, 471
SetI ASST 7 cut(s) 140, 159, 165, 194, 309, 375, 427
SfaNI GCATC 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 402
SinI GGWCC 1 cut(s) 323
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 245, 319, 424, 469
TaaI ACNGT 2 cut(s) 230, 327
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 402, 459
TasI AATT 1 cut(s) 8
TatI WGTACW 1 cut(s) 287
Tru1I TTAA 2 cut(s) 30, 377
Tru9I TTAA 2 cut(s) 30, 377
TspDTI ATGAA 3 cut(s) 10, 442, 456
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.