Rh1AG151300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000217
Physical Location & Seq
Reverse (-)
28363527 .. 28371503
7977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG151300.1

Sequence Viewer

Length: 633 bp
ATGACGGAGGTCGAGATTAATAGAACGGAGAATCCGAGTGATGAAACCACATTACCAAGATTGGTGGTTCTGAAATCAAACAACAACAACAAATACTTGAGCTACACAAAGATTAATGAGGAAAATGTTGATCAGATTAACAATGGCAACCCAAGATTAGATGAAGGTTTTCAAGATCAACATCATGGTAGAGATGAATCAAACATCCCTGAGGAACACCAAGCAAATGAATTAGTGAATCACGGTGATGATGAGGAGATCAACAACGACGACGAAGAAGATGATAATAATAATAATCGTCGTGCTCGTGCTCATCCTCGTCCTCCACGAAACGAAATGGATAGGAAGAGAATATTAGTCCGTCTTCGCCATGTCCAACTTGGACACTACGTAGGCTTGCAGAGGGACAATGTCGACGCACAACACTTCATGGGAGGCTTATCCACTTCACCTGACAATGATACCAACAGCAGTATGGATGAGAATAATATTAGTACTAATGAACAAACTAACCGTACAGAGAATGACAATGATTTCATAAATGATGATGCTGACGTTATGGAGGATGATGAACCATCATCAAATAAAAATGAAGATATAGTTGGTAGTGAGGCAGATAGTGATTTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

24.11

Weight (kDa)

4.35

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AfaI GTAC 2 cut(s) 496, 517
AgsI TTSAA 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AloI GAACNNNNNNTCC 2 cut(s) 16, 48
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw21I GWGCWC 2 cut(s) 307, 313
AseI ATTAAT 2 cut(s) 18, 114
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 257, 441
AxyI CCTNAGG 1 cut(s) 210
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 2 cut(s) 307, 313
BccI CCATC 1 cut(s) 583
BclI TGATCA 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 496
BmsI GCATC 1 cut(s) 538
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 180
Bse21I CCTNAGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 180
BseGI GGATG 4 cut(s) 204, 313, 484, 571
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 269
BsiHKAI GWGCWC 2 cut(s) 307, 313
BslFI GGGAC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 307, 313
Bsp143I GATC 3 cut(s) 130, 175, 258
BspCNI CTCAG 1 cut(s) 202
BssMI GATC 3 cut(s) 130, 175, 258
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 245, 515
Bst6I CTCTTC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 4 cut(s) 204, 313, 484, 571
BstKTI GATC 3 cut(s) 133, 178, 261
BstMBI GATC 3 cut(s) 130, 175, 258
BstPAI GACNNNNGTC 1 cut(s) 8
BstSNI TACGTA 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 356
Bsu36I CCTNAGG 1 cut(s) 210
BtsCI GGATG 4 cut(s) 204, 313, 484, 571
Cac8I GCNNGC 1 cut(s) 398
CseI GACGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 495, 516
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 3 cut(s) 185, 371, 430
CviJI RGCY 3 cut(s) 102, 396, 438
CviKI_1 RGCY 3 cut(s) 102, 396, 438
CviQI GTAC 2 cut(s) 495, 516
DdeI CTNAG 1 cut(s) 210
DpnI GATC 3 cut(s) 132, 177, 260
DpnII GATC 3 cut(s) 130, 175, 258
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco105I TACGTA 1 cut(s) 391
Eco81I CCTNAGG 1 cut(s) 210
FaeI CATG 3 cut(s) 188, 374, 433
FaiI YATR 7 cut(s) 186, 372, 431, 476, 539, 560, 599
FaqI GGGAC 1 cut(s) 419
FatI CATG 3 cut(s) 184, 370, 429
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 1 cut(s) 414
FokI GGATG 4 cut(s) 191, 300, 491, 578
HgaI GACGC 1 cut(s) 425
Hin1II CATG 3 cut(s) 188, 374, 433
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 3 cut(s) 31, 197, 238
HphI GGTGA 2 cut(s) 257, 441
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 36, 72, 135
Hpy188III TCNNGA 2 cut(s) 13, 173
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 4 cut(s) 272, 275, 303, 419
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 245, 515
HpyCH4IV ACGT 2 cut(s) 390, 555
HpyCH4V TGCA 1 cut(s) 400
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 2 cut(s) 390, 555
Hsp92II CATG 3 cut(s) 188, 374, 433
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 175, 258
LpnPI CCDG 2 cut(s) 222, 465
LweI GCATC 1 cut(s) 538
MaeII ACGT 2 cut(s) 390, 555
MalI GATC 3 cut(s) 132, 177, 260
MboI GATC 3 cut(s) 130, 175, 258
MboII GAAGA 5 cut(s) 287, 290, 356, 358, 605
MhlI GDGCHC 2 cut(s) 307, 313
MluCI AATT 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 9 cut(s) 112, 205, 247, 327, 333, 396, 428, 556, 604
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 3 cut(s) 18, 114, 138
MslI CAYNNNNRTG 1 cut(s) 246
NdeII GATC 3 cut(s) 130, 175, 258
NlaIII CATG 3 cut(s) 188, 374, 433
PcsI WCGNNNNNNNCGW 3 cut(s) 32, 304, 325
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 31, 197, 238
PflFI GACNNNGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 391
PshAI GACNNNNGTC 1 cut(s) 8
PshBI ATTAAT 2 cut(s) 18, 114
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 2 cut(s) 496, 517
RsaNI GTAC 2 cut(s) 495, 516
RseI CAYNNNNRTG 1 cut(s) 246
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 3 cut(s) 18, 114, 138
Sau3AI GATC 3 cut(s) 130, 175, 258
ScaI AGTACT 1 cut(s) 496
SduI GDGCHC 2 cut(s) 307, 313
SetI ASST 6 cut(s) 12, 104, 169, 393, 454, 558
SfaNI GCATC 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SnaBI TACGTA 1 cut(s) 391
Sse9I AATT 1 cut(s) 230
SspI AATATT 2 cut(s) 354, 490
TaaI ACNGT 2 cut(s) 245, 515
TaiI ACGT 2 cut(s) 393, 558
TaqI TCGA 2 cut(s) 12, 414
TasI AATT 1 cut(s) 230
TatI WGTACW 1 cut(s) 494
TfiI GAWTC 3 cut(s) 31, 197, 238
Tru1I TTAA 3 cut(s) 18, 114, 138
Tru9I TTAA 3 cut(s) 18, 114, 138
TspDTI ATGAA 9 cut(s) 57, 177, 210, 243, 418, 516, 526, 585, 606
TspGWI ACGGA 3 cut(s) 20, 41, 350
Tth111I GACNNNGTC 1 cut(s) 410
VspI ATTAAT 2 cut(s) 18, 114
XcmI CCANNNNNNNNNTGG 2 cut(s) 377, 472
XmiI GTMKAC 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.