Rh2CG553000

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000217
Physical Location & Seq
Forward (+)
73223762 .. 73224016
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG553000.1

Sequence Viewer

Length: 255 bp
ATGCCGGCAAAAACTTCAATATCTGTGAGCCTGATGGCGACTAAGGGAACTTGCGACGTGCCTTACTCTTATTATCAGCGGGACGTCCTTTATAACGGTAAAATCATTGTCTATAAGAAAGATGACGGGCTGTACACGGGTGTTAATTCATATAACTTCCACTATGAGGTTACAACACTGAAAGAGCCAGAACCTAGAGCTGATTTGCCGACCAAACAGCATAAGTTGCCGGACCCATCGGTCGACCTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

84

Amino Acids

9.51

Weight (kDa)

6.71

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 1 cut(s) 87
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 18
AjiI CACGTC 1 cut(s) 58
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 232
AvaII GGWCC 1 cut(s) 232
BccI CCATC 2 cut(s) 28, 244
BfaI CTAG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 4
BseLI CCNNNNNNNGG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 5, 230
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 132
BspACI CCGC 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 4
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 42
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 226
BtrI CACGTC 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 4 cut(s) 30, 130, 187, 200
CviKI_1 RGCY 4 cut(s) 30, 130, 187, 200
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 42
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 232
FaiI YATR 7 cut(s) 93, 114, 151, 153, 165, 222, 253
FaqI GGGAC 1 cut(s) 95
FauI CCCGC 1 cut(s) 72
FblI GTMKAC 1 cut(s) 243
FspBI CTAG 1 cut(s) 195
HapII CCGG 2 cut(s) 5, 230
Hin1I GRCGYC 1 cut(s) 84
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HpaII CCGG 2 cut(s) 5, 230
Hpy166II GTNNAC 2 cut(s) 135, 244
Hpy8I GTNNAC 2 cut(s) 135, 244
Hpy99I CGWCG 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 57, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 2 cut(s) 57, 84
Hsp92I GRCGYC 1 cut(s) 84
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 18, 44, 201, 243
MaeI CTAG 1 cut(s) 195
MaeII ACGT 2 cut(s) 57, 84
MaeIII GTNAC 1 cut(s) 169
MluCI AATT 1 cut(s) 145
MnlI CCTC 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 2 cut(s) 5, 230
MwoI GCNNNNNNNGC 1 cut(s) 226
NaeI GCCGGC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 4
NlaIV GGNNCC 1 cut(s) 234
PdiI GCCGGC 1 cut(s) 6
PsiI TTATAA 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 232
SetI ASST 6 cut(s) 60, 87, 171, 196, 202, 249
SinI GGWCC 1 cut(s) 232
Sse9I AATT 1 cut(s) 145
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 2 cut(s) 60, 87
TaqI TCGA 1 cut(s) 243
TaqII GACCGA 1 cut(s) 229
TasI AATT 1 cut(s) 145
TatI WGTACW 1 cut(s) 132
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 1 cut(s) 195
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.