Rmu_co8232187.1_g000001

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8232187.1
OG0000217
Physical Location & Seq
Reverse (-)
1 .. 758
758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8232187.1_g000001.1.cds

Sequence Viewer

Length: 751 bp
gaaccagaggaggaccaatccaaatggtcgtgtacattatttgagcctcaagtagctgaagatggcaaccccgacaaagctcggttgttccatgtccaatcaaaacaatatgcaacggcatgggacataggtggagcagtaagggtcttgagattaattgctgcgcagaatcaacagaatatctttgatatcatcgacttggagtcattggtgatattgccaaagcatgtggccttcaaaggccacaccggcaattaccttcagcttgtggcggatgctaagctcaggttcatttccaccgataaggggattcctgagtcctggttcgaggtgtccactgatggccatggaagggtacaaatcaaatcttaccacgacaatagctacttttttaacagcagtgacaggatttggtctgacccaagggttgccgccaccgatactagcaccttgttttggccggtgaaggtcgacagtaataaggtcgctctcaaaagcaacaacaagttttgcgcccaaatcagtgatgctaatggaaccgatgccctcaatgcagtctacatcagcattccaaccaactcacgcttcacgctggaagagcttgttctatctaggagaatttacaacaccgactttgaccttaagaatgccataatctacggcgagactccggtcaccatggccaccgcaaacgccagcaacaacacctcagcagacaacactgtggaattcaagttcgcttacacggaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

250

Amino Acids

28.04

Weight (kDa)

5.17

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 165
AccI GTMKAC 2 cut(s) 471, 558
AciI CCGC 3 cut(s) 272, 432, 687
AcoI YGGCCR 3 cut(s) 343, 458, 681
AcsI RAATTY 2 cut(s) 618, 728
AcuI CTGAAG 2 cut(s) 78, 245
AfaI GTAC 2 cut(s) 34, 357
AfiI CCNNNNNNNGG 3 cut(s) 306, 352, 456
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 2 cut(s) 238, 733
AhdI GACNNNNNGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 320
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AloI GAACNNNNNNTCC 2 cut(s) 719, 751
AluBI AGCT 6 cut(s) 56, 80, 265, 283, 384, 601
AluI AGCT 6 cut(s) 56, 80, 265, 283, 384, 601
Alw26I GTCTC 1 cut(s) 659
AoxI GGCC 5 cut(s) 231, 241, 343, 458, 681
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 618, 728
AseI ATTAAT 1 cut(s) 155
AspLEI GCGC 2 cut(s) 166, 515
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 3 cut(s) 223, 475, 667
AvaII GGWCC 1 cut(s) 13
BalI TGGCCA 2 cut(s) 345, 683
BbvCI CCTCAGC 1 cut(s) 709
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 56, 335
BceAI ACGGC 2 cut(s) 132, 676
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 2 cut(s) 444, 612
BfrI CTTAAG 1 cut(s) 641
BglI GCCNNNNNGGC 1 cut(s) 249
BisI GCNGC 2 cut(s) 162, 432
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 2 cut(s) 163, 433
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 13
BmeRI GACNNNNNGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 265, 517, 532
BoxI GACNNNNGTC 1 cut(s) 671
Bpu10I CCTNAGC 2 cut(s) 284, 709
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 33, 169
BsaJI CCNNGG 3 cut(s) 346, 422, 678
BsaWI WCCGGW 1 cut(s) 670
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 352, 456
Bse118I RCCGGY 2 cut(s) 248, 460
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 3 cut(s) 346, 422, 678
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 3 cut(s) 306, 352, 456
BseMII CTCAG 3 cut(s) 298, 306, 723
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 5 cut(s) 233, 243, 345, 460, 683
BsiSI CCGG 3 cut(s) 249, 461, 671
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 306, 352, 456
BsmAI GTCTC 1 cut(s) 659
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 2 cut(s) 567, 652
BsnI GGCC 5 cut(s) 233, 243, 345, 460, 683
Bsp1407I TGTACA 1 cut(s) 32
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 2 cut(s) 346, 678
BspACI CCGC 3 cut(s) 272, 432, 687
BspANI GGCC 5 cut(s) 233, 243, 345, 460, 683
BspCNI CTCAG 3 cut(s) 297, 307, 722
BspLI GGNNCC 1 cut(s) 538
BspQI GCTCTTC 1 cut(s) 591
BspTI CTTAAG 1 cut(s) 641
BsrFI RCCGGY 2 cut(s) 248, 460
BsrGI TGTACA 1 cut(s) 32
BssAI RCCGGY 2 cut(s) 248, 460
BssECI CCNNGG 3 cut(s) 346, 422, 678
BssT1I CCWWGG 3 cut(s) 346, 422, 678
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 476, 724
Bst6I CTCTTC 1 cut(s) 591
BstAFI CTTAAG 1 cut(s) 641
BstAUI TGTACA 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 4 cut(s) 279, 284, 315, 709
BstDSI CCRYGG 2 cut(s) 346, 678
BstEII GGTNACC 1 cut(s) 673
BstF5I GGATG 1 cut(s) 280
BstHHI GCGC 2 cut(s) 166, 515
BstMAI GTCTC 1 cut(s) 659
BstMWI GCNNNNNNNGC 3 cut(s) 249, 551, 598
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 230
BstPAI GACNNNNGTC 1 cut(s) 671
BstPI GGTNACC 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 5 cut(s) 233, 243, 345, 460, 683
BtgI CCRYGG 2 cut(s) 346, 678
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 4 cut(s) 336, 406, 529, 720
Cac8I GCNNGC 1 cut(s) 697
CfoI GCGC 2 cut(s) 166, 515
Cfr10I RCCGGY 2 cut(s) 248, 460
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 33, 356
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 5 cut(s) 92, 120, 227, 347, 679
CviQI GTAC 2 cut(s) 33, 356
DdeI CTNAG 4 cut(s) 279, 284, 315, 709
DriI GACNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 3 cut(s) 343, 458, 681
Eam1104I CTCTTC 1 cut(s) 591
Eam1105I GACNNNNNGTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 591
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 3 cut(s) 346, 422, 678
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 78, 245
Eco91I GGTNACC 1 cut(s) 673
EcoO65I GGTNACC 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 320
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 3 cut(s) 346, 422, 678
ErhI CCWWGG 3 cut(s) 346, 422, 678
FaeI CATG 5 cut(s) 95, 123, 230, 350, 682
FaiI YATR 8 cut(s) 93, 111, 121, 128, 228, 348, 653, 680
FaqI GGGAC 1 cut(s) 137
FatI CATG 5 cut(s) 91, 119, 226, 346, 678
FblI GTMKAC 2 cut(s) 471, 558
Fnu4HI GCNGC 2 cut(s) 162, 432
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 162, 432
FspBI CTAG 2 cut(s) 444, 612
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 2 cut(s) 165, 514
GluI GCNGC 2 cut(s) 162, 432
HaeIII GGCC 5 cut(s) 233, 243, 345, 460, 683
HapII CCGG 3 cut(s) 249, 461, 671
HhaI GCGC 2 cut(s) 166, 515
Hin1II CATG 5 cut(s) 95, 123, 230, 350, 682
Hin6I GCGC 2 cut(s) 164, 513
HinP1I GCGC 2 cut(s) 164, 513
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 5 cut(s) 169, 203, 310, 317, 667
HpaII CCGG 3 cut(s) 249, 461, 671
HphI GGTGA 3 cut(s) 223, 475, 667
Hpy166II GTNNAC 4 cut(s) 33, 336, 472, 559
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 2 cut(s) 148, 314
Hpy8I GTNNAC 4 cut(s) 33, 336, 472, 559
HpyAV CCTTC 4 cut(s) 244, 269, 345, 460
HpyCH4III ACNGT 2 cut(s) 476, 724
HpyCH4V TGCA 2 cut(s) 113, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 249, 551, 598
HpyF3I CTNAG 4 cut(s) 279, 284, 315, 709
Hsp92II CATG 5 cut(s) 95, 123, 230, 350, 682
HspAI GCGC 2 cut(s) 164, 513
LguI GCTCTTC 1 cut(s) 591
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 3 cut(s) 265, 517, 532
MaeI CTAG 2 cut(s) 444, 612
MaeIII GTNAC 2 cut(s) 401, 673
MboII GAAGA 2 cut(s) 71, 608
MlsI TGGCCA 2 cut(s) 345, 683
MluCI AATT 4 cut(s) 156, 253, 618, 728
MluNI TGGCCA 2 cut(s) 345, 683
MlyI GAGTC 3 cut(s) 212, 326, 661
MmeI TCCRAC 1 cut(s) 596
MnlI CCTC 5 cut(s) 4, 57, 322, 557, 718
Mox20I TGGCCA 2 cut(s) 345, 683
MscI TGGCCA 2 cut(s) 345, 683
MseI TTAA 3 cut(s) 155, 393, 642
Msp20I TGGCCA 2 cut(s) 345, 683
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 3 cut(s) 249, 461, 671
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 2 cut(s) 567, 652
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 3 cut(s) 249, 551, 598
NcoI CCATGG 2 cut(s) 346, 678
NlaIII CATG 5 cut(s) 95, 123, 230, 350, 682
NlaIV GGNNCC 1 cut(s) 538
NmuCI GTSAC 2 cut(s) 401, 673
NsbI TGCGCA 1 cut(s) 165
NspI RCATGY 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 591
PctI GAATGC 2 cut(s) 567, 652
PfeI GAWTC 2 cut(s) 169, 310
PkrI GCNGC 2 cut(s) 163, 433
PleI GAGTC 3 cut(s) 211, 325, 661
PpsI GAGTC 3 cut(s) 211, 325, 661
PshAI GACNNNNGTC 1 cut(s) 671
PshBI ATTAAT 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 320
PspEI GGTNACC 1 cut(s) 673
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 1 cut(s) 13
RsaI GTAC 2 cut(s) 34, 357
RsaNI GTAC 2 cut(s) 33, 356
SalI GTCGAC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 3 cut(s) 155, 393, 642
SatI GCNGC 2 cut(s) 162, 432
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 3 cut(s) 212, 326, 661
ScrFI CCNGG 1 cut(s) 322
SfaNI GCATC 3 cut(s) 265, 517, 532
SinI GGWCC 1 cut(s) 13
SmlI CTYRAG 3 cut(s) 48, 148, 641
SmoI CTYRAG 3 cut(s) 48, 148, 641
Sse9I AATT 4 cut(s) 156, 253, 618, 728
SsiI CCGC 3 cut(s) 272, 432, 687
SspMI CTAG 2 cut(s) 444, 612
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 3 cut(s) 346, 422, 678
TaaI ACNGT 2 cut(s) 476, 724
TaqI TCGA 3 cut(s) 195, 327, 471
TasI AATT 4 cut(s) 156, 253, 618, 728
TatI WGTACW 1 cut(s) 32
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 2 cut(s) 169, 310
Tru1I TTAA 3 cut(s) 155, 393, 642
Tru9I TTAA 3 cut(s) 155, 393, 642
TscAI CASTG 4 cut(s) 343, 406, 529, 727
TseFI GTSAC 2 cut(s) 401, 673
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 2 cut(s) 401, 673
TspDTI ATGAA 1 cut(s) 280
TspRI CASTG 4 cut(s) 343, 406, 529, 727
Vha464I CTTAAG 1 cut(s) 641
VpaK11BI GGWCC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 2 cut(s) 618, 728
XceI RCATGY 1 cut(s) 230
XmiI GTMKAC 2 cut(s) 471, 558
XspI CTAG 2 cut(s) 444, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.