RLG00000010009

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000217
Physical Location & Seq
Forward (+)
61718633 .. 61720596
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010009

Sequence Viewer

Length: 405 bp
ATGGCATTGCTTCCAAGGTTTGCGGTGCTCAAATCCTCCTGGAACGACAGACTCCAGAAGTTCGCATCCTTGTGGAAGAGTAATACAACTGGTCCGTTCCTAAATGCCTTATACCTAGGAGCAGGCGATGTTTTCAAAGTCGTTGACTGGGAAGCGCTGGTGATACTTCCCTCACGAGTCGCCTTCAAATCCGAAGATAATGGCTATTACCTCTGTTCCCGCGGGATCGAAGGATACCCATATCAGATGTTCGAGTCCAACTTAAATGTTGGAGATCCACTGGTGGCCAAGGAGTTGTTCGTCACTGCTGAAGGAAACCTTCGTATAAAGGACGGGCACTATGCCAAATTCTGGAGGCATGAACGATTCCCCGGTGCTGAGTACAACAGCAAAATAAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

135

Amino Acids

15.3

Weight (kDa)

9.01

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 351
AccII CGCG 1 cut(s) 222
AciI CCGC 3 cut(s) 23, 220, 222
AclWI GGATC 2 cut(s) 233, 269
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 383
AfeI AGCGCT 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 2 cut(s) 136, 187
AjnI CCWGG 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 2 cut(s) 233, 269
Aor51HI AGCGCT 1 cut(s) 156
AoxI GGCC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 347
AspA2I CCTAGG 1 cut(s) 115
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 339
BalI TGGCCA 1 cut(s) 287
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 40
BciVI GTATCC 1 cut(s) 227
BcnI CCSGG 1 cut(s) 372
BfaI CTAG 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 158
BfuI GTATCC 1 cut(s) 227
BlnI CCTAGG 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 40, 372
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 40, 372
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 157
BpmI CTGGAG 2 cut(s) 38, 373
BpuMI CCSGG 1 cut(s) 372
BsaJI CCNNGG 5 cut(s) 14, 115, 220, 288, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse1I ACTGG 3 cut(s) 94, 152, 285
Bse3DI GCAATG 1 cut(s) 5
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 5 cut(s) 14, 115, 220, 288, 370
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 3 cut(s) 94, 152, 285
BseSI GKGCMC 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 351
BsnI GGCC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 30, 339
Bsp143I GATC 2 cut(s) 225, 274
BspACI CCGC 3 cut(s) 23, 220, 222
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 222
BspPI GGATC 2 cut(s) 233, 269
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 3 cut(s) 94, 152, 285
BssECI CCNNGG 5 cut(s) 14, 115, 220, 288, 370
BssMI GATC 2 cut(s) 225, 274
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 3 cut(s) 14, 115, 288
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 2 cut(s) 228, 277
BstMBI GATC 2 cut(s) 225, 274
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 38, 370
BstSLI GKGCMC 1 cut(s) 339
BstUI CGCG 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 278, 303
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 92
Cfr42I CCGCGG 1 cut(s) 223
Csp6I GTAC 1 cut(s) 382
CviAII CATG 1 cut(s) 359
CviJI RGCY 3 cut(s) 204, 287, 401
CviKI_1 RGCY 3 cut(s) 204, 287, 401
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 227, 276
DpnII GATC 2 cut(s) 225, 274
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco130I CCWWGG 3 cut(s) 14, 115, 288
Eco47I GGWCC 1 cut(s) 92
Eco47III AGCGCT 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 3 cut(s) 14, 115, 288
ErhI CCWWGG 3 cut(s) 14, 115, 288
FaeI CATG 1 cut(s) 362
FaiI YATR 5 cut(s) 112, 241, 326, 342, 360
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FatI CATG 1 cut(s) 358
FauI CCCGC 2 cut(s) 215, 227
FokI GGATG 1 cut(s) 52
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 38, 373
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 372
HhaI GCGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 362
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 4 cut(s) 51, 177, 254, 366
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 193, 246
Hpy188III TCNNGA 3 cut(s) 55, 174, 352
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 4 cut(s) 193, 224, 305, 329
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 1 cut(s) 362
HspAI GCGC 1 cut(s) 155
KspI CCGCGG 1 cut(s) 223
Kzo9I GATC 2 cut(s) 225, 274
LmnI GCTCC 1 cut(s) 119
LweI GCATC 1 cut(s) 74
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 227, 276
MboI GATC 2 cut(s) 225, 274
MboII GAAGA 2 cut(s) 88, 206
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 2 cut(s) 30, 339
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 1 cut(s) 347
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 3 cut(s) 45, 186, 263
MmeI TCCRAC 2 cut(s) 250, 282
MnlI CCTC 4 cut(s) 46, 181, 221, 348
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 2 cut(s) 263, 403
MslI CAYNNNNRTG 1 cut(s) 70
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 40, 372
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 222
NciI CCSGG 1 cut(s) 372
NdeII GATC 2 cut(s) 225, 274
NlaIII CATG 1 cut(s) 362
NmuCI GTSAC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 351
PfoI TCCNGGA 1 cut(s) 38
PleI GAGTC 3 cut(s) 45, 185, 262
PpsI GAGTC 3 cut(s) 45, 185, 262
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspPI GGNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 70
SacII CCGCGG 1 cut(s) 223
SaqAI TTAA 2 cut(s) 263, 403
Sau3AI GATC 2 cut(s) 225, 274
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 3 cut(s) 45, 186, 263
ScrFI CCNGG 2 cut(s) 40, 372
SduI GDGCHC 2 cut(s) 30, 339
SetI ASST 5 cut(s) 20, 117, 213, 321, 403
SfaNI GCATC 1 cut(s) 74
Sfr303I CCGCGG 1 cut(s) 223
SgrBI CCGCGG 1 cut(s) 223
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 1 cut(s) 347
SsiI CCGC 3 cut(s) 23, 220, 222
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 38, 370
StyI CCWWGG 3 cut(s) 14, 115, 288
TaqI TCGA 2 cut(s) 228, 252
TasI AATT 1 cut(s) 347
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 2 cut(s) 263, 403
Tru9I TTAA 2 cut(s) 263, 403
TscAI CASTG 2 cut(s) 285, 310
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 2 cut(s) 285, 310
Van91I CCANNNNNTGG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 347
XmaJI CCTAGG 1 cut(s) 115
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.