Rh1CG141500

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000217
Physical Location & Seq
Forward (+)
30757625 .. 30761069
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG141500.1

Sequence Viewer

Length: 1506 bp
ATGGCAGGGCTTCCAAGATTTGTAGTGCTAAAATCCTTGAACCACAAATGCTTGTGTTTAACAAAAAATGTTCCATGTGAGCCAGCAGGGTTCATGAAGTGCATTAGAGAACAAGTTGTGAGTCCACAGGCAAAGTTTGAAGTGGAGATGGCAAAGAATGTGAATGGACTGGTGCACATAAGATGCTGCTACAACAACAAGTACTGGGTGACAAACCAGGCTGCCAGGGATGATACAGTTTGGATAGTTGCGTCCGCGGACAAACCAGAGGAAGACCAATCAAAAAGCTCCTGCACCTTGTTCAAGCCTAGGTTTGCAGAAGGCCAAACACAAGTCCAATTTATCCACGTCCAACTCTGGATCTCCGTATCCTTGTGGAAGAGTGCTACTACATTCGAGAATGCCTTATATCTAGGAGGACGCGGCGATGTTTTCGAAGTTGTTGACTGGGAATCGCTGGTGATACTTCCCCCACGGGTGGCCTTCAAATCCTTAGAAGATGGCAGTTACCTCTGTTCCCGCTGGATCGAACGACACCCATATCAAAGGTTCGAGTCCAACTTGGATGTTGGAGATCCATTGGTGGCCAAGGAGTTATTCGTTACTGCTGATGGAAGCCTTCGTATAAAGGACGGGCACTACGGCAAATTCTGGAGGCGTAGCCCTAACTGGATCTGGGCTGATGCATCATCCGAAAACACGTCCGACGACACTTTGTTTTGGCCTGTCAAAATCCAAGACAATGTCATTGCTCTTCGCAACTTGGGTAACAAAAATTTTTGCGGTGGACTCACCACCGAATACAAAACCAACTGTCTCAACGCCGCCTACCCTAATATCTGTAAACAGTCAAAGCTGGTGGTGGAAGAGCTTGTTCTTTCAAGGAACATCTACAATATCAATTTCCGACTCTCCGACTCCAGGATCTACCACGAGCAGGTCATAGAAATGGACACAGCTCTCGCCGTTAATGACAGCCCAAACAGAGACTCCACTATCAGCCTCAAGTTTGCGGAAAAAGATTCCAGGACCCGTAGTTGGAATGGCAGCGTTTCATTGAAGTTGGGTGTCAAAACAACTCTCGAAGTCAAATCTGTTCCACTAATTCTTGACGGAAATATCGAACTTTCGGCTGAGGTTACGACAGCATGCCAGTGGGGAGAAACTACCACAGTTGAACATACCAGGGAAGCCAATTATGCTGTTGATGTGCCACCACTATCCAAGATGAAGGTGAGTCTCATAGCTTCAAGGGCTTCATGCGATGTGCCCTTCTCGTACAGTCAGCGTGACATTCTCACTGATGGCCGAACCGTTACCAAAACCATGGATGATGGCCTTTTCACTGGGATTAATGCCTACAAATTTGACTACCAAAACCAGGCATCCTACGATCGCCAGCCTCTCTCTGTCTCTAGCCCATGGAGGCTCCCGCGCGCTGTGTACTTTGGGATTTGTGTGATTCTGGTGTTTAGTGTGTTGCTGCCTTTGCTGCATTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

501

Amino Acids

56.63

Weight (kDa)

7.05

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 3 - 128 1e-17 Agglutinin domain
Agglutinin PF07468 159 - 288 1.8e-08 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 928
AccII CGCG 4 cut(s) 257, 423, 1435, 1437
AciI CCGC 8 cut(s) 255, 257, 423, 520, 783, 825, 1013, 1433
AclWI GGATC 5 cut(s) 368, 533, 569, 680, 932
AcoI YGGCCR 2 cut(s) 585, 1306
AcsI RAATTY 3 cut(s) 647, 775, 1364
AfaI GTAC 3 cut(s) 203, 1280, 1445
AfiI CCNNNNNNNGG 5 cut(s) 478, 921, 937, 1038, 1381
AflIII ACRYGT 1 cut(s) 699
AgsI TTSAA 8 cut(s) 40, 140, 304, 487, 882, 1060, 1178, 1251
AjiI CACGTC 2 cut(s) 349, 702
AjnI CCWGG 6 cut(s) 216, 224, 920, 1025, 1184, 1380
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 5 cut(s) 288, 856, 871, 959, 1247
AluI AGCT 5 cut(s) 288, 856, 871, 959, 1247
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 4 cut(s) 821, 981, 1244, 1417
Alw44I GTGCAC 1 cut(s) 173
AlwI GGATC 5 cut(s) 368, 533, 569, 680, 932
AoxI GGCC 6 cut(s) 322, 480, 585, 722, 1306, 1336
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 5 cut(s) 186, 221, 1047, 1483, 1492
ApoI RAATTY 3 cut(s) 647, 775, 1364
AseI ATTAAT 1 cut(s) 1353
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 2 cut(s) 1437, 1439
AspS9I GGNCC 1 cut(s) 1029
AsuHPI GGTGA 4 cut(s) 220, 472, 784, 1246
AsuII TTCGAA 1 cut(s) 435
AvaII GGWCC 1 cut(s) 1029
AvrII CCTAGG 1 cut(s) 308
BaeGI GKGCMC 3 cut(s) 177, 639, 1272
BalI TGGCCA 1 cut(s) 587
BauI CACGAG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 1134
BbvI GCAGC 5 cut(s) 173, 208, 1059, 1470, 1479
BccI CCATC 5 cut(s) 142, 494, 605, 1298, 1328
BceAI ACGGC 2 cut(s) 658, 950
BciT130I CCWGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 4 cut(s) 821, 981, 1244, 1417
BfaI CTAG 3 cut(s) 309, 413, 1416
BfuAI ACCTGC 1 cut(s) 928
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1484, 1493
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 7 cut(s) 188, 223, 425, 826, 1049, 1485, 1494
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
Bme18I GGWCC 1 cut(s) 1029
BmgBI CACGTC 2 cut(s) 349, 702
BmgT120I GGNCC 1 cut(s) 1029
BmiI GGNNCC 2 cut(s) 1031, 1430
BmrFI CCNGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
BmrI ACTGGG 3 cut(s) 214, 457, 1356
BmsI GCATC 4 cut(s) 173, 673, 695, 1394
BmuI ACTGGG 3 cut(s) 214, 457, 1356
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 2 cut(s) 673, 904
Bpu10I CCTNAGC 1 cut(s) 1134
Bpu14I TTCGAA 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 989
BsaJI CCNNGG 8 cut(s) 225, 255, 308, 473, 588, 1185, 1326, 1421
BsaXI ACNNNNNCTCC 2 cut(s) 974, 1004
Bsc4I CCNNNNNNNGG 5 cut(s) 478, 921, 937, 1038, 1381
Bse1I ACTGG 6 cut(s) 174, 209, 452, 674, 1153, 1351
Bse3DI GCAATG 1 cut(s) 747
BseBI CCWGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
BseDI CCNNGG 8 cut(s) 225, 255, 308, 473, 588, 1185, 1326, 1421
BseGI GGATG 5 cut(s) 235, 571, 689, 1336, 1385
BseLI CCNNNNNNNGG 5 cut(s) 478, 921, 937, 1038, 1381
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 1 cut(s) 1125
BseNI ACTGG 6 cut(s) 174, 209, 452, 674, 1153, 1351
BsePI GCGCGC 1 cut(s) 1435
BseSI GKGCMC 3 cut(s) 177, 639, 1272
BseXI GCAGC 5 cut(s) 173, 208, 1059, 1470, 1479
BsgI GTGCAG 1 cut(s) 277
Bsh1236I CGCG 4 cut(s) 257, 423, 1435, 1437
Bsh1285I CGRYCG 1 cut(s) 1396
BshFI GGCC 6 cut(s) 324, 482, 587, 724, 1308, 1338
BsiEI CGRYCG 1 cut(s) 1396
BsiHKAI GWGCWC 1 cut(s) 177
BslI CCNNNNNNNGG 5 cut(s) 478, 921, 937, 1038, 1381
BsmAI GTCTC 4 cut(s) 821, 981, 1244, 1417
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 6 cut(s) 324, 482, 587, 724, 1308, 1338
Bsp119I TTCGAA 1 cut(s) 435
Bsp1286I GDGCHC 3 cut(s) 177, 639, 1272
Bsp143I GATC 6 cut(s) 360, 525, 574, 672, 924, 1393
Bsp19I CCATGG 2 cut(s) 1326, 1421
BspACI CCGC 8 cut(s) 255, 257, 423, 520, 783, 825, 1013, 1433
BspANI GGCC 6 cut(s) 324, 482, 587, 724, 1308, 1338
BspCNI CTCAG 1 cut(s) 1126
BspFNI CGCG 4 cut(s) 257, 423, 1435, 1437
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 1031, 1430
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 5 cut(s) 368, 533, 569, 680, 932
BspQI GCTCTTC 2 cut(s) 759, 861
BspT104I TTCGAA 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 747
BsrI ACTGG 6 cut(s) 174, 209, 452, 674, 1153, 1351
BssECI CCNNGG 8 cut(s) 225, 255, 308, 473, 588, 1185, 1326, 1421
BssHII GCGCGC 1 cut(s) 1435
BssMI GATC 6 cut(s) 360, 525, 574, 672, 924, 1393
BssSI CACGAG 1 cut(s) 932
BssT1I CCWWGG 4 cut(s) 308, 588, 1326, 1421
Bst2BI CACGAG 1 cut(s) 932
Bst2UI CCWGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
Bst4CI ACNGT 6 cut(s) 238, 815, 849, 1174, 1283, 1315
Bst6I CTCTTC 3 cut(s) 374, 759, 861
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 4 cut(s) 84, 1150, 1400, 1437
BstDEI CTNAG 2 cut(s) 493, 1134
BstDSI CCRYGG 4 cut(s) 255, 473, 1326, 1421
BstF5I GGATG 5 cut(s) 235, 571, 689, 1336, 1385
BstFNI CGCG 4 cut(s) 257, 423, 1435, 1437
BstHHI GCGC 2 cut(s) 1437, 1439
BstKTI GATC 6 cut(s) 363, 528, 577, 675, 927, 1396
BstMAI GTCTC 4 cut(s) 821, 981, 1244, 1417
BstMBI GATC 6 cut(s) 360, 525, 574, 672, 924, 1393
BstMCI CGRYCG 1 cut(s) 1396
BstMWI GCNNNNNNNGC 4 cut(s) 1199, 1253, 1489, 1492
BstNI CCWGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
BstNSI RCATGY 1 cut(s) 1152
BstSCI CCNGG 6 cut(s) 216, 224, 920, 1025, 1184, 1380
BstSLI GKGCMC 3 cut(s) 177, 639, 1272
BstUI CGCG 4 cut(s) 257, 423, 1435, 1437
BstV1I GCAGC 5 cut(s) 173, 208, 1059, 1470, 1479
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 4 cut(s) 360, 574, 672, 924
BstXI CCANNNNNNTGG 1 cut(s) 1327
BstYI RGATCY 4 cut(s) 360, 574, 672, 924
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 6 cut(s) 324, 482, 587, 724, 1308, 1338
BtgI CCRYGG 4 cut(s) 255, 473, 1326, 1421
BtgZI GCGATG 2 cut(s) 441, 1278
BtrI CACGTC 2 cut(s) 349, 702
BtsCI GGATG 5 cut(s) 235, 571, 689, 1336, 1385
BtsIMutI CAGTG 3 cut(s) 1160, 1299, 1344
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 4 cut(s) 84, 1150, 1400, 1437
CciI TCATGA 1 cut(s) 93
CfoI GCGC 2 cut(s) 1437, 1439
Cfr13I GGNCC 1 cut(s) 1029
Cfr42I CCGCGG 1 cut(s) 258
CseI GACGC 2 cut(s) 240, 429
Csp6I GTAC 3 cut(s) 202, 1279, 1444
CspCI CAANNNNNGTGG 2 cut(s) 840, 875
CviAII CATG 6 cut(s) 75, 94, 1149, 1260, 1327, 1422
CviQI GTAC 3 cut(s) 202, 1279, 1444
DdeI CTNAG 2 cut(s) 493, 1134
DpnI GATC 6 cut(s) 362, 527, 576, 674, 926, 1395
DpnII GATC 6 cut(s) 360, 525, 574, 672, 924, 1393
EaeI YGGCCR 2 cut(s) 585, 1306
Eam1104I CTCTTC 3 cut(s) 374, 759, 861
EarI CTCTTC 3 cut(s) 374, 759, 861
Eco130I CCWWGG 4 cut(s) 308, 588, 1326, 1421
Eco47I GGWCC 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 1029
EcoRII CCWGG 6 cut(s) 216, 224, 920, 1025, 1184, 1380
EcoT14I CCWWGG 4 cut(s) 308, 588, 1326, 1421
EcoT22I ATGCAT 1 cut(s) 688
ErhI CCWWGG 4 cut(s) 308, 588, 1326, 1421
FaeI CATG 6 cut(s) 78, 97, 1152, 1263, 1330, 1425
FatI CATG 6 cut(s) 74, 93, 1148, 1259, 1326, 1421
FauI CCCGC 2 cut(s) 527, 1440
Fnu4HI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1484, 1493
FokI GGATG 5 cut(s) 242, 578, 676, 1343, 1372
Fsp4HI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1484, 1493
FspBI CTAG 3 cut(s) 309, 413, 1416
GlaI GCGC 2 cut(s) 1436, 1438
GluI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1484, 1493
GsuI CTGGAG 2 cut(s) 673, 904
HaeIII GGCC 6 cut(s) 324, 482, 587, 724, 1308, 1338
HgaI GACGC 2 cut(s) 240, 429
HhaI GCGC 2 cut(s) 1437, 1439
Hin1II CATG 6 cut(s) 78, 97, 1152, 1263, 1330, 1425
Hin6I GCGC 2 cut(s) 1435, 1437
HinP1I GCGC 2 cut(s) 1435, 1437
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HphI GGTGA 4 cut(s) 220, 472, 784, 1246
Hpy166II GTNNAC 6 cut(s) 125, 175, 445, 788, 845, 1444
Hpy188I TCNGA 4 cut(s) 694, 706, 908, 916
Hpy188III TCNNGA 6 cut(s) 94, 358, 397, 652, 1082, 1109
Hpy8I GTNNAC 6 cut(s) 125, 175, 445, 788, 845, 1444
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 5 cut(s) 314, 493, 629, 1225, 1282
HpyCH4III ACNGT 6 cut(s) 238, 815, 849, 1174, 1283, 1315
HpyCH4IV ACGT 2 cut(s) 348, 701
HpyCH4V TGCA 6 cut(s) 102, 175, 294, 317, 686, 1495
HpyF10VI GCNNNNNNNGC 4 cut(s) 1199, 1253, 1489, 1492
HpyF3I CTNAG 2 cut(s) 493, 1134
HpySE526I ACGT 2 cut(s) 348, 701
Hsp92II CATG 6 cut(s) 78, 97, 1152, 1263, 1330, 1425
HspAI GCGC 2 cut(s) 1435, 1437
KspI CCGCGG 1 cut(s) 258
Kzo9I GATC 6 cut(s) 360, 525, 574, 672, 924, 1393
LguI GCTCTTC 2 cut(s) 759, 861
LmnI GCTCC 2 cut(s) 293, 1434
Lsp1109I GCAGC 5 cut(s) 173, 208, 1059, 1470, 1479
LweI GCATC 4 cut(s) 173, 673, 695, 1394
MaeI CTAG 3 cut(s) 309, 413, 1416
MaeII ACGT 2 cut(s) 348, 701
MaeIII GTNAC 7 cut(s) 208, 506, 601, 767, 1138, 1289, 1315
MalI GATC 6 cut(s) 362, 527, 576, 674, 926, 1395
MboI GATC 6 cut(s) 360, 525, 574, 672, 924, 1393
MboII GAAGA 5 cut(s) 284, 391, 509, 746, 878
MflI RGATCY 4 cut(s) 360, 574, 672, 924
MhlI GDGCHC 3 cut(s) 177, 639, 1272
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 7 cut(s) 338, 647, 775, 901, 1104, 1195, 1364
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 7 cut(s) 130, 563, 783, 903, 911, 983, 1246
MmeI TCCRAC 7 cut(s) 376, 550, 582, 729, 931, 939, 1019
MnlI CCTC 8 cut(s) 262, 410, 521, 648, 1013, 1129, 1413, 1419
Mox20I TGGCCA 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 688
MscI TGGCCA 1 cut(s) 587
MseI TTAA 3 cut(s) 59, 969, 1353
MslI CAYNNNNRTG 2 cut(s) 947, 1153
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 2 cut(s) 257, 522
MspR9I CCNGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
MvnI CGCG 4 cut(s) 257, 423, 1435, 1437
MwoI GCNNNNNNNGC 4 cut(s) 1199, 1253, 1489, 1492
NcoI CCATGG 2 cut(s) 1326, 1421
NdeII GATC 6 cut(s) 360, 525, 574, 672, 924, 1393
NlaIII CATG 6 cut(s) 78, 97, 1152, 1263, 1330, 1425
NlaIV GGNNCC 2 cut(s) 1031, 1430
NmuCI GTSAC 2 cut(s) 208, 1289
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 1152
NspV TTCGAA 1 cut(s) 435
PaeI GCATGC 1 cut(s) 1152
PagI TCATGA 1 cut(s) 93
PauI GCGCGC 1 cut(s) 1435
PciSI GCTCTTC 2 cut(s) 759, 861
PcsI WCGNNNNNNNCGW 1 cut(s) 1119
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 452, 1022, 1462
PflFI GACNNNGTC 1 cut(s) 743
PfoI TCCNGGA 2 cut(s) 920, 1025
PkrI GCNGC 7 cut(s) 188, 223, 425, 826, 1049, 1485, 1494
Ple19I CGATCG 1 cut(s) 1396
PleI GAGTC 7 cut(s) 129, 562, 783, 903, 911, 983, 1245
PpsI GAGTC 7 cut(s) 129, 562, 783, 903, 911, 983, 1245
PpuMI RGGWCCY 1 cut(s) 1029
PshBI ATTAAT 1 cut(s) 1353
Psp5II RGGWCCY 1 cut(s) 1029
Psp6I CCWGG 6 cut(s) 216, 224, 920, 1025, 1184, 1380
PspGI CCWGG 6 cut(s) 216, 224, 920, 1025, 1184, 1380
PspN4I GGNNCC 2 cut(s) 1031, 1430
PspPI GGNCC 1 cut(s) 1029
PspPPI RGGWCCY 1 cut(s) 1029
PsuI RGATCY 4 cut(s) 360, 574, 672, 924
PsyI GACNNNGTC 1 cut(s) 743
PteI GCGCGC 1 cut(s) 1435
PvuI CGATCG 1 cut(s) 1396
RsaI GTAC 3 cut(s) 203, 1280, 1445
RsaNI GTAC 3 cut(s) 202, 1279, 1444
RseI CAYNNNNRTG 2 cut(s) 947, 1153
SacII CCGCGG 1 cut(s) 258
SapI GCTCTTC 2 cut(s) 759, 861
SaqAI TTAA 3 cut(s) 59, 969, 1353
SatI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1484, 1493
Sau3AI GATC 6 cut(s) 360, 525, 574, 672, 924, 1393
Sau96I GGNCC 1 cut(s) 1029
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 7 cut(s) 130, 563, 783, 903, 911, 983, 1246
ScrFI CCNGG 6 cut(s) 218, 226, 922, 1027, 1186, 1382
SduI GDGCHC 3 cut(s) 177, 639, 1272
SfaNI GCATC 4 cut(s) 173, 673, 695, 1394
Sfr303I CCGCGG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 435
SgrBI CCGCGG 1 cut(s) 258
SinI GGWCC 1 cut(s) 1029
SmiMI CAYNNNNRTG 2 cut(s) 947, 1153
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
SphI GCATGC 1 cut(s) 1152
Sse9I AATT 7 cut(s) 338, 647, 775, 901, 1104, 1195, 1364
SsiI CCGC 8 cut(s) 255, 257, 423, 520, 783, 825, 1013, 1433
SspMI CTAG 3 cut(s) 309, 413, 1416
StyD4I CCNGG 6 cut(s) 216, 224, 920, 1025, 1184, 1380
StyI CCWWGG 4 cut(s) 308, 588, 1326, 1421
TaaI ACNGT 6 cut(s) 238, 815, 849, 1174, 1283, 1315
TaiI ACGT 2 cut(s) 351, 704
TaqI TCGA 6 cut(s) 396, 435, 528, 552, 1083, 1122
TasI AATT 7 cut(s) 338, 647, 775, 901, 1104, 1195, 1364
TatI WGTACW 2 cut(s) 201, 1443
TauI GCSGC 2 cut(s) 426, 827
TfiI GAWTC 3 cut(s) 452, 1022, 1462
Tru1I TTAA 3 cut(s) 59, 969, 1353
Tru9I TTAA 3 cut(s) 59, 969, 1353
TscAI CASTG 3 cut(s) 1160, 1306, 1351
TseFI GTSAC 2 cut(s) 208, 1289
TseI GCWGC 5 cut(s) 186, 221, 1047, 1483, 1492
Tsp45I GTSAC 2 cut(s) 208, 1289
TspDTI ATGAA 5 cut(s) 82, 110, 1044, 1244, 1248
TspGWI ACGGA 2 cut(s) 355, 1128
TspRI CASTG 3 cut(s) 1160, 1306, 1351
Tth111I GACNNNGTC 1 cut(s) 743
VneI GTGCAC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 1029
VspI ATTAAT 1 cut(s) 1353
XapI RAATTY 3 cut(s) 647, 775, 1364
XceI RCATGY 1 cut(s) 1152
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 3 cut(s) 309, 413, 1416
ZrmI AGTACT 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.