pycom06g20700

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000217
Physical Location & Seq
Reverse (-)
23611954 .. 23612595
642 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g20700.1

Sequence Viewer

Length: 642 bp
ATGGGACGTCTTGCAGAGGGAGCCGCTGCTAACAACTTCAATCAATGCCTCTACGCAGACGAGAGAGGCACCAACCTTGAAAACCGTGTGGTTCAGTTCACAGTCATAGACTTGGATCCACTCGCACTACCTGACACTTTTGTATTGAAATCAAACAGCTGCGACAAATACTTGAGCAACATACTTGATGAAGAAAACCAAAATCATGAGATTGTTCAATTCGCCGGAGAGGATCCTAAGAGGGAGCATTCAATCTTCCAAGTAGAGCAGGCAAACAGTAAGGACTATCAAGAGAATCATTACGCGCACATCAAATGCTTGTACAACAAGTATTTGAGAAGGATGGACCTAGACAAGCAATTGATCATGGCAGTGGCTGACCGACGAGATGAAAGCACAAAAATTTGGGGTTGCACGTTGTTCAAGCCTAGCGTGTCGGACAGGCCAGCAAAAACCACAACAACATGCTCTGCTATTTGCGCCACGTGCAAAGCGGCCTCTACACAAGGCCATTCGTCGAGAATAGATTCGAATTACGCCTCAGCGACGAAAAACCTGACTCCCATGAAGCGGATGTCTACACAGCCATCCGCAGCCTTCCATGATAATTATTCATCATTATCATTTGATGTTTGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

214

Amino Acids

23.92

Weight (kDa)

6.07

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 42 - 145 3e-10 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 578
AccII CGCG 1 cut(s) 305
AciI CCGC 4 cut(s) 24, 494, 571, 591
AclWI GGATC 4 cut(s) 110, 123, 227, 240
AcsI RAATTY 1 cut(s) 402
AcvI CACGTG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 570
AgsI TTSAA 6 cut(s) 40, 80, 148, 218, 252, 424
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
AlwI GGATC 4 cut(s) 110, 123, 227, 240
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 3 cut(s) 443, 495, 508
ApeKI GCWGC 3 cut(s) 26, 159, 593
ApoI RAATTY 1 cut(s) 402
Asp700I GAANNNNTTC 1 cut(s) 526
AspLEI GCGC 2 cut(s) 307, 482
AspS9I GGNCC 1 cut(s) 346
AsuII TTCGAA 1 cut(s) 530
AvaII GGWCC 1 cut(s) 346
BamHI GGATCC 2 cut(s) 115, 232
BanI GGYRCC 1 cut(s) 68
BbrPI CACGTG 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 541
BbvI GCAGC 3 cut(s) 13, 146, 605
BccI CCATC 2 cut(s) 337, 595
BclI TGATCA 1 cut(s) 363
BfaI CTAG 2 cut(s) 350, 429
BisI GCNGC 5 cut(s) 24, 27, 160, 495, 594
BlsI GCNGC 5 cut(s) 25, 28, 161, 496, 595
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 4 cut(s) 22, 70, 117, 234
Bpu10I CCTNAGC 1 cut(s) 541
Bpu14I TTCGAA 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 570
BseGI GGATG 3 cut(s) 348, 579, 587
BseLI CCNNNNNNNGG 1 cut(s) 570
BseMII CTCAG 1 cut(s) 555
BseXI GCAGC 3 cut(s) 13, 146, 605
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 3 cut(s) 445, 497, 510
BshNI GGYRCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 570
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 3 cut(s) 445, 497, 510
Bsp119I TTCGAA 1 cut(s) 530
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 115, 232, 363
BspACI CCGC 4 cut(s) 24, 494, 571, 591
BspANI GGCC 3 cut(s) 445, 497, 510
BspCNI CTCAG 1 cut(s) 554
BspFNI CGCG 1 cut(s) 305
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 4 cut(s) 22, 70, 117, 234
BspPI GGATC 4 cut(s) 110, 123, 227, 240
BspT104I TTCGAA 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 321
BssMI GATC 3 cut(s) 115, 232, 363
BssNI GRCGYC 1 cut(s) 7
Bst4CI ACNGT 3 cut(s) 86, 103, 278
BstACI GRCGYC 1 cut(s) 7
BstAUI TGTACA 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 270, 447
BstDEI CTNAG 2 cut(s) 237, 541
BstF5I GGATG 3 cut(s) 348, 579, 587
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 2 cut(s) 307, 482
BstKTI GATC 3 cut(s) 118, 235, 366
BstMBI GATC 3 cut(s) 115, 232, 363
BstMWI GCNNNNNNNGC 3 cut(s) 20, 479, 486
BstNSI RCATGY 1 cut(s) 468
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 13, 146, 605
BstX2I RGATCY 2 cut(s) 115, 232
BstYI RGATCY 2 cut(s) 115, 232
BsuRI GGCC 3 cut(s) 445, 497, 510
BtsCI GGATG 3 cut(s) 348, 579, 587
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 2 cut(s) 270, 447
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 307, 482
Cfr13I GGNCC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 322
CviAII CATG 5 cut(s) 206, 367, 465, 565, 602
CviJI RGCY 9 cut(s) 23, 159, 377, 427, 445, 497, 510, 586, 596
CviKI_1 RGCY 9 cut(s) 23, 159, 377, 427, 445, 497, 510, 586, 596
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 237, 541
DpnI GATC 3 cut(s) 117, 234, 365
DpnII GATC 3 cut(s) 115, 232, 363
Eco47I GGWCC 1 cut(s) 346
Eco72I CACGTG 1 cut(s) 486
FaeI CATG 5 cut(s) 209, 370, 468, 568, 605
FaiI YATR 7 cut(s) 107, 182, 207, 368, 466, 566, 603
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 205, 366, 464, 564, 601
FbaI TGATCA 1 cut(s) 363
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 5 cut(s) 24, 27, 160, 495, 594
FokI GGATG 3 cut(s) 355, 574, 586
Fsp4HI GCNGC 5 cut(s) 24, 27, 160, 495, 594
FspBI CTAG 2 cut(s) 350, 429
GlaI GCGC 2 cut(s) 306, 481
GluI GCNGC 5 cut(s) 24, 27, 160, 495, 594
HaeIII GGCC 3 cut(s) 445, 497, 510
HapII CCGG 1 cut(s) 225
HhaI GCGC 2 cut(s) 307, 482
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 5 cut(s) 209, 370, 468, 568, 605
Hin6I GCGC 2 cut(s) 305, 480
HinP1I GCGC 2 cut(s) 305, 480
HinfI GANTC 3 cut(s) 295, 527, 559
HpaII CCGG 1 cut(s) 225
Hpy166II GTNNAC 2 cut(s) 99, 579
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 3 cut(s) 206, 290, 519
Hpy8I GTNNAC 2 cut(s) 99, 579
Hpy99I CGWCG 3 cut(s) 387, 520, 550
HpyAV CCTTC 2 cut(s) 333, 607
HpyCH4III ACNGT 3 cut(s) 86, 103, 278
HpyCH4IV ACGT 3 cut(s) 7, 416, 485
HpyCH4V TGCA 3 cut(s) 14, 414, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 479, 486
HpyF3I CTNAG 2 cut(s) 237, 541
HpySE526I ACGT 3 cut(s) 7, 416, 485
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 5 cut(s) 209, 370, 468, 568, 605
HspAI GCGC 2 cut(s) 305, 480
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 3 cut(s) 115, 232, 363
LmnI GCTCC 2 cut(s) 20, 244
LpnPI CCDG 6 cut(s) 144, 238, 254, 427, 459, 569
Lsp1109I GCAGC 3 cut(s) 13, 146, 605
MaeI CTAG 2 cut(s) 350, 429
MaeII ACGT 3 cut(s) 7, 416, 485
MalI GATC 3 cut(s) 117, 234, 365
MboI GATC 3 cut(s) 115, 232, 363
MboII GAAGA 2 cut(s) 203, 247
MfeI CAATTG 1 cut(s) 359
MflI RGATCY 2 cut(s) 115, 232
MluCI AATT 5 cut(s) 218, 359, 402, 532, 607
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 7 cut(s) 10, 59, 59, 223, 234, 508, 550
MroXI GAANNNNTTC 1 cut(s) 526
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 2 cut(s) 26, 159
MspI CCGG 1 cut(s) 225
MunI CAATTG 1 cut(s) 359
Mva1269I GAATGC 1 cut(s) 247
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 3 cut(s) 20, 479, 486
NdeII GATC 3 cut(s) 115, 232, 363
NlaIII CATG 5 cut(s) 209, 370, 468, 568, 605
NlaIV GGNNCC 4 cut(s) 22, 70, 117, 234
NspI RCATGY 1 cut(s) 468
NspV TTCGAA 1 cut(s) 530
PagI TCATGA 1 cut(s) 205
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 2 cut(s) 295, 527
PkrI GCNGC 5 cut(s) 25, 28, 161, 496, 595
PleI GAGTC 1 cut(s) 553
PmaCI CACGTG 1 cut(s) 486
PmlI CACGTG 1 cut(s) 486
PpsI GAGTC 1 cut(s) 553
Ppu21I YACGTR 1 cut(s) 486
PspCI CACGTG 1 cut(s) 486
PspN4I GGNNCC 4 cut(s) 22, 70, 117, 234
PspPI GGNCC 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 2 cut(s) 115, 232
PvuII CAGCTG 1 cut(s) 159
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 371
SatI GCNGC 5 cut(s) 24, 27, 160, 495, 594
Sau3AI GATC 3 cut(s) 115, 232, 363
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 1 cut(s) 553
SetI ASST 8 cut(s) 10, 78, 133, 161, 351, 419, 488, 558
SfuI TTCGAA 1 cut(s) 530
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 5 cut(s) 218, 359, 402, 532, 607
SsiI CCGC 4 cut(s) 24, 494, 571, 591
SspMI CTAG 2 cut(s) 350, 429
TaaI ACNGT 3 cut(s) 86, 103, 278
TaiI ACGT 3 cut(s) 10, 419, 488
TaqI TCGA 2 cut(s) 518, 530
TaqII GACCGA 1 cut(s) 396
TasI AATT 5 cut(s) 218, 359, 402, 532, 607
TatI WGTACW 1 cut(s) 321
TauI GCSGC 2 cut(s) 26, 497
TfiI GAWTC 2 cut(s) 295, 527
TscAI CASTG 1 cut(s) 378
TseI GCWGC 3 cut(s) 26, 159, 593
TspDTI ATGAA 4 cut(s) 204, 405, 581, 603
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 1 cut(s) 402
XceI RCATGY 1 cut(s) 468
XmiI GTMKAC 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 2 cut(s) 350, 429
ZraI GACGTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.