Rh2AG570800

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000217
Physical Location & Seq
Forward (+)
80092487 .. 80093938
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG570800.1

Sequence Viewer

Length: 1452 bp
ATGGCCAATACTGGGAAGGGACTAGTCCATATACGATGCTTTCATAACAGAAAGTTCCTACGAACAAGAATTGAGGGTGATGTGCACCTTTCTCCGGAGGCTGATGAACCAGAGGAGGACCAATCCAAATGGTCGTGTACACTGTTTGAACCTCAAGTAGCTGTAGATGGCAACCCCGACAAAGCCCGGTTCTTGCATGTCCAATCAAAACGATATGCAACGGCATGGGACGAAGGTGGAGTACGGTTCTTGAGATTATATGACAATCCTCATCCTCAGAACATCTATGATATCACTGACGTGGAGTCACTGGTGATATTGCCAAAGCATGTGGCTTTCAAAGGCGACAACGGCAATTACCTTATGGTGGAAGCCACGACTACGTCGAACCCGACCTTCTCGTCCACCGACAAGGGGATGCCTGAGTCATGGTTCGAGGTCTCCACGGATGGCCATGGTAGGGTGCAAATCAAGTCGTTCAACACCAATAGGTACTTGAGGAACGACGCTGTCCGCAACTGGATTTTAGCTGACTCAGCCGGCAACGCCACCGACCTGACTACCTTATTTTGGCCAGTCAAGGTCGACAATAGTACGGTCGCTCTCAAAAGCTTAAGCAACGACAAATTTTGCTCCCGATACACCGATCATGGTATAATAAGCGGTCTGAACGCAAGGCTGACCAGTATTACAGTACACTCACGCATCGCGCTGGAAGAGCTTGTTCTCTCTAGGAGAATCTACGATGTTGATTTTGACCTCGCTAATGCTGTAATCTACGGCGAGACCCCAGTCACCATGGCCACAGCAAATGCCAGCAACAACACCTCAGCAGACAACAAAGTGGAATTCAAGTTCATGTACACGGAGGGTAAGAGCAGCACTTGGAGTTCCAGCCACTCGTGGATGGTAGGGGTACAAGTCAAAGCCAGCTTAAATATTCCATTCGGGATCGGTGGTATTGAAACTACATATTCCGGGCAGTATAACGGATCCTACAAATGGGGAGAAACAATTACAACCAAAAACACATTGGAGACTACCTACACCGCCACTGTGCCGGCAAACACTTCTATATCTGTGAGGCTGATGGCGACCAAGGGATATTGCGACGTGCCTTACTCTTATTATCAGCGGGACGTGCTTTATGACGGTAAAACCGTTGTCTACAAGAAGGATGATGGGCTGTACACGGGAATTAATTCATACAACTTCCGCTACGAGGTTACAACTCTCAAAGAGCCAAAACCTAGAGCTCATTTGCTAACCAGACAGCAAAAGTTGCCGGACCCATCGGTCGACGCCACCATAGAACAAAAGCTACCTCAGCCCGTGCCATCTGAATCAACCACCAGAGTGAAAAACCAGGTGACTTCAACCACCACCCCAGAAGAAGAGCTGTCAATGCTGGGATTAGAAGATGCAGCAGCTCAATCTGCCATGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

483

Amino Acids

54.01

Weight (kDa)

6.04

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 3 - 85 5.9e-10 Agglutinin domain
Agglutinin PF07468 110 - 231 1.4e-06 Agglutinin domain
Aerolysin PF01117 250 - 376 4.4e-08 Aerolysin toxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 400, 1295
AccI GTMKAC 3 cut(s) 585, 1167, 1299
AccII CGCG 1 cut(s) 710
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 5 cut(s) 514, 663, 1050, 1135, 1216
AclWI GGATC 3 cut(s) 959, 987, 1000
AcoI YGGCCR 4 cut(s) 3, 451, 572, 801
AcsI RAATTY 2 cut(s) 626, 848
AcyI GRCGYC 1 cut(s) 1302
AfaI GTAC 8 cut(s) 139, 243, 494, 595, 696, 863, 918, 1190
AfiI CCNNNNNNNGG 8 cut(s) 12, 94, 367, 414, 460, 570, 1002, 1222
AflII CTTAAG 1 cut(s) 613
AgsI TTSAA 6 cut(s) 149, 340, 481, 853, 965, 1377
AhdI GACNNNNNGTC 1 cut(s) 304
AhlI ACTAGT 1 cut(s) 22
AjiI CACGTC 3 cut(s) 301, 1114, 1141
AjnI CCWGG 1 cut(s) 1365
AleI CACNNNNGTG 2 cut(s) 299, 1355
AloI GAACNNNNNNTCC 2 cut(s) 839, 871
AluBI AGCT 9 cut(s) 161, 530, 612, 721, 933, 1256, 1321, 1399, 1430
AluI AGCT 9 cut(s) 161, 530, 612, 721, 933, 1256, 1321, 1399, 1430
Alw21I GWGCWC 2 cut(s) 87, 1258
Alw26I GTCTC 3 cut(s) 445, 779, 1031
Alw44I GTGCAC 1 cut(s) 83
AlwI GGATC 3 cut(s) 959, 987, 1000
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 4 cut(s) 3, 451, 572, 801
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 879, 1424, 1427
ApoI RAATTY 2 cut(s) 626, 848
AseI ATTAAT 1 cut(s) 1200
Asp700I GAANNNNTTC 1 cut(s) 1201
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 2 cut(s) 118, 1288
AsuC2I CCSGG 2 cut(s) 187, 979
AsuHPI GGTGA 4 cut(s) 89, 325, 787, 1381
AvaII GGWCC 2 cut(s) 118, 1288
BaeGI GKGCMC 1 cut(s) 87
BalI TGGCCA 4 cut(s) 5, 453, 574, 803
BamHI GGATCC 1 cut(s) 992
BanII GRGCYC 1 cut(s) 1258
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BauI CACGAG 1 cut(s) 901
Bbv12I GWGCWC 2 cut(s) 87, 1258
BbvCI CCTCAGC 2 cut(s) 829, 1326
BbvI GCAGC 3 cut(s) 891, 1436, 1439
BccI CCATC 7 cut(s) 161, 443, 901, 1084, 1175, 1300, 1345
BceAI ACGGC 3 cut(s) 237, 367, 796
BciT130I CCWGG 1 cut(s) 1367
BcnI CCSGG 2 cut(s) 187, 979
BcoDI GTCTC 3 cut(s) 445, 779, 1031
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 4 cut(s) 23, 732, 1251, 1450
BfmI CTRYAG 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 613
BisI GCNGC 3 cut(s) 880, 1425, 1428
BlsI GCNGC 3 cut(s) 881, 1426, 1429
Bme1390I CCNGG 3 cut(s) 187, 979, 1367
Bme18I GGWCC 2 cut(s) 118, 1288
BmeRI GACNNNNNGTC 1 cut(s) 304
BmgBI CACGTC 3 cut(s) 301, 1114, 1141
BmgT120I GGNCC 2 cut(s) 118, 1288
BmiI GGNNCC 2 cut(s) 994, 1290
BmrFI CCNGG 3 cut(s) 187, 979, 1367
BmrI ACTGGG 2 cut(s) 21, 785
BmsI GCATC 4 cut(s) 26, 408, 714, 1411
BmuI ACTGGG 2 cut(s) 21, 785
BoxI GACNNNNGTC 1 cut(s) 791
Bpu10I CCTNAGC 2 cut(s) 829, 1326
BpuEI CTTGAG 3 cut(s) 138, 271, 517
BpuMI CCSGG 2 cut(s) 187, 979
BsaHI GRCGYC 1 cut(s) 1302
BsaI GGTCTC 2 cut(s) 445, 779
BsaJI CCNNGG 4 cut(s) 444, 454, 798, 1098
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 8 cut(s) 12, 94, 367, 414, 460, 570, 1002, 1222
Bse118I RCCGGY 2 cut(s) 539, 1060
Bse1I ACTGG 6 cut(s) 16, 315, 524, 575, 684, 791
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 1367
BseDI CCNNGG 4 cut(s) 444, 454, 798, 1098
BseGI GGATG 5 cut(s) 271, 423, 454, 912, 1183
BseLI CCNNNNNNNGG 8 cut(s) 12, 94, 367, 414, 460, 570, 1002, 1222
BseMII CTCAG 5 cut(s) 290, 414, 549, 843, 1340
BseNI ACTGG 6 cut(s) 16, 315, 524, 575, 684, 791
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 3 cut(s) 891, 1436, 1439
BseYI CCCAGC 1 cut(s) 1408
Bsh1236I CGCG 1 cut(s) 710
Bsh1285I CGRYCG 2 cut(s) 600, 1299
BshFI GGCC 4 cut(s) 5, 453, 574, 803
BsiEI CGRYCG 2 cut(s) 600, 1299
BsiHKAI GWGCWC 2 cut(s) 87, 1258
BsiSI CCGG 6 cut(s) 95, 187, 540, 978, 1061, 1286
BslFI GGGAC 3 cut(s) 33, 242, 1151
BslI CCNNNNNNNGG 8 cut(s) 12, 94, 367, 414, 460, 570, 1002, 1222
BsmAI GTCTC 3 cut(s) 445, 779, 1031
BsmFI GGGAC 3 cut(s) 33, 242, 1151
BsnI GGCC 4 cut(s) 5, 453, 574, 803
Bso31I GGTCTC 2 cut(s) 445, 779
Bsp1286I GDGCHC 2 cut(s) 87, 1258
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 3 cut(s) 137, 861, 1188
Bsp143I GATC 3 cut(s) 646, 951, 992
Bsp19I CCATGG 2 cut(s) 454, 798
BspACI CCGC 5 cut(s) 514, 663, 1050, 1135, 1216
BspANI GGCC 4 cut(s) 5, 453, 574, 803
BspCNI CTCAG 5 cut(s) 289, 415, 548, 842, 1339
BspEI TCCGGA 1 cut(s) 94
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 2 cut(s) 994, 1290
BspPI GGATC 3 cut(s) 959, 987, 1000
BspQI GCTCTTC 2 cut(s) 711, 1389
BspTI CTTAAG 1 cut(s) 613
BspTNI GGTCTC 2 cut(s) 445, 779
BsrFI RCCGGY 2 cut(s) 539, 1060
BsrGI TGTACA 3 cut(s) 137, 861, 1188
BsrI ACTGG 6 cut(s) 16, 315, 524, 575, 684, 791
BssAI RCCGGY 2 cut(s) 539, 1060
BssECI CCNNGG 4 cut(s) 444, 454, 798, 1098
BssMI GATC 3 cut(s) 646, 951, 992
BssNI GRCGYC 1 cut(s) 1302
BssSI CACGAG 1 cut(s) 901
BssT1I CCWWGG 3 cut(s) 454, 798, 1098
Bst2BI CACGAG 1 cut(s) 901
Bst2UI CCWGG 1 cut(s) 1367
Bst4CI ACNGT 7 cut(s) 144, 246, 598, 694, 1057, 1154, 1162
Bst6I CTCTTC 2 cut(s) 711, 1389
BstACI GRCGYC 1 cut(s) 1302
BstAFI CTTAAG 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 1282
BstAUI TGTACA 3 cut(s) 137, 861, 1188
BstC8I GCNNGC 4 cut(s) 541, 817, 931, 1062
BstDEI CTNAG 5 cut(s) 276, 423, 535, 829, 1326
BstDSI CCRYGG 3 cut(s) 444, 454, 798
BstF5I GGATG 5 cut(s) 271, 423, 454, 912, 1183
BstFNI CGCG 1 cut(s) 710
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 3 cut(s) 649, 954, 995
BstMAI GTCTC 3 cut(s) 445, 779, 1031
BstMBI GATC 3 cut(s) 646, 951, 992
BstMCI CGRYCG 2 cut(s) 600, 1299
BstMWI GCNNNNNNNGC 9 cut(s) 351, 536, 545, 718, 1141, 1282, 1327, 1405, 1436
BstNI CCWGG 1 cut(s) 1367
BstNSI RCATGY 2 cut(s) 200, 332
BstPAI GACNNNNGTC 1 cut(s) 791
BstSCI CCNGG 3 cut(s) 185, 977, 1365
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 3 cut(s) 891, 1436, 1439
BstX2I RGATCY 1 cut(s) 992
BstYI RGATCY 1 cut(s) 992
BsuRI GGCC 4 cut(s) 5, 453, 574, 803
BtgI CCRYGG 3 cut(s) 444, 454, 798
BtgZI GCGATG 1 cut(s) 691
BtrI CACGTC 3 cut(s) 301, 1114, 1141
BtsCI GGATG 5 cut(s) 271, 423, 454, 912, 1183
BtsIMutI CAGTG 4 cut(s) 140, 294, 308, 1053
Cac8I GCNNGC 4 cut(s) 541, 817, 931, 1062
CfoI GCGC 1 cut(s) 712
Cfr10I RCCGGY 2 cut(s) 539, 1060
Cfr13I GGNCC 2 cut(s) 118, 1288
CseI GACGC 2 cut(s) 515, 1310
CsiI ACCWGGT 1 cut(s) 1365
Csp6I GTAC 8 cut(s) 138, 242, 493, 594, 695, 862, 917, 1189
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 9 cut(s) 197, 225, 329, 429, 455, 650, 799, 859, 1441
CviQI GTAC 8 cut(s) 138, 242, 493, 594, 695, 862, 917, 1189
DdeI CTNAG 5 cut(s) 276, 423, 535, 829, 1326
DpnI GATC 3 cut(s) 648, 953, 994
DpnII GATC 3 cut(s) 646, 951, 992
DrdI GACNNNNNNGTC 2 cut(s) 400, 1295
DriI GACNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 2 cut(s) 400, 1295
EaeI YGGCCR 4 cut(s) 3, 451, 572, 801
Eam1104I CTCTTC 2 cut(s) 711, 1389
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 2 cut(s) 711, 1389
Ecl136II GAGCTC 1 cut(s) 1256
Eco130I CCWWGG 3 cut(s) 454, 798, 1098
Eco24I GRGCYC 1 cut(s) 1258
Eco31I GGTCTC 2 cut(s) 445, 779
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 118, 1288
Eco53kI GAGCTC 1 cut(s) 1256
EcoICRI GAGCTC 1 cut(s) 1256
EcoRI GAATTC 1 cut(s) 848
EcoRII CCWGG 1 cut(s) 1365
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 3 cut(s) 454, 798, 1098
EcoT38I GRGCYC 1 cut(s) 1258
ErhI CCWWGG 3 cut(s) 454, 798, 1098
FaeI CATG 9 cut(s) 200, 228, 332, 432, 458, 653, 802, 862, 1444
FaqI GGGAC 3 cut(s) 33, 242, 1151
FatI CATG 9 cut(s) 196, 224, 328, 428, 454, 649, 798, 858, 1440
FauI CCCGC 1 cut(s) 1128
FblI GTMKAC 3 cut(s) 585, 1167, 1299
Fnu4HI GCNGC 3 cut(s) 880, 1425, 1428
FokI GGATG 5 cut(s) 258, 430, 461, 919, 1190
FriOI GRGCYC 1 cut(s) 1258
Fsp4HI GCNGC 3 cut(s) 880, 1425, 1428
FspBI CTAG 4 cut(s) 23, 732, 1251, 1450
GlaI GCGC 1 cut(s) 711
GluI GCNGC 3 cut(s) 880, 1425, 1428
GsaI CCCAGC 1 cut(s) 1412
HaeIII GGCC 4 cut(s) 5, 453, 574, 803
HapII CCGG 6 cut(s) 95, 187, 540, 978, 1061, 1286
HgaI GACGC 2 cut(s) 515, 1310
HhaI GCGC 1 cut(s) 712
Hin1I GRCGYC 1 cut(s) 1302
Hin1II CATG 9 cut(s) 200, 228, 332, 432, 458, 653, 802, 862, 1444
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HincII GTYRAC 2 cut(s) 586, 1300
HindII GTYRAC 2 cut(s) 586, 1300
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 5 cut(s) 305, 425, 533, 738, 1343
HpaII CCGG 6 cut(s) 95, 187, 540, 978, 1061, 1286
HphI GGTGA 4 cut(s) 89, 325, 787, 1381
Hpy188I TCNGA 3 cut(s) 279, 669, 1342
Hpy188III TCNNGA 4 cut(s) 95, 250, 636, 949
Hpy99I CGWCG 4 cut(s) 388, 509, 1115, 1304
HpyAV CCTTC 4 cut(s) 10, 227, 406, 1168
HpyCH4III ACNGT 7 cut(s) 144, 246, 598, 694, 1057, 1154, 1162
HpyCH4IV ACGT 4 cut(s) 300, 383, 1113, 1140
HpyCH4V TGCA 5 cut(s) 85, 196, 218, 466, 1424
HpyF10VI GCNNNNNNNGC 9 cut(s) 351, 536, 545, 718, 1141, 1282, 1327, 1405, 1436
HpyF3I CTNAG 5 cut(s) 276, 423, 535, 829, 1326
HpySE526I ACGT 4 cut(s) 300, 383, 1113, 1140
Hsp92I GRCGYC 1 cut(s) 1302
Hsp92II CATG 9 cut(s) 200, 228, 332, 432, 458, 653, 802, 862, 1444
HspAI GCGC 1 cut(s) 710
Kpn2I TCCGGA 1 cut(s) 94
KroI GCCGGC 2 cut(s) 539, 1060
KroNI GCCGGC 2 cut(s) 541, 1062
Kzo9I GATC 3 cut(s) 646, 951, 992
LguI GCTCTTC 2 cut(s) 711, 1389
LmnI GCTCC 1 cut(s) 638
Lsp1109I GCAGC 3 cut(s) 891, 1436, 1439
LweI GCATC 4 cut(s) 26, 408, 714, 1411
MabI ACCWGGT 1 cut(s) 1365
MaeI CTAG 4 cut(s) 23, 732, 1251, 1450
MaeII ACGT 4 cut(s) 300, 383, 1113, 1140
MaeIII GTNAC 4 cut(s) 306, 793, 1225, 1369
MalI GATC 3 cut(s) 648, 953, 994
MboI GATC 3 cut(s) 646, 951, 992
MboII GAAGA 4 cut(s) 728, 1403, 1406, 1430
MflI RGATCY 1 cut(s) 992
MhlI GDGCHC 2 cut(s) 87, 1258
MlsI TGGCCA 4 cut(s) 5, 453, 574, 803
MluCI AATT 7 cut(s) 69, 355, 626, 848, 1014, 1197, 1201
MluNI TGGCCA 4 cut(s) 5, 453, 574, 803
MlyI GAGTC 3 cut(s) 314, 434, 527
Mox20I TGGCCA 4 cut(s) 5, 453, 574, 803
MroI TCCGGA 1 cut(s) 94
MroNI GCCGGC 2 cut(s) 539, 1060
MroXI GAANNNNTTC 1 cut(s) 1201
MscI TGGCCA 4 cut(s) 5, 453, 574, 803
MseI TTAA 3 cut(s) 614, 935, 1200
MslI CAYNNNNRTG 2 cut(s) 299, 1355
Msp20I TGGCCA 4 cut(s) 5, 453, 574, 803
MspA1I CMGCKG 1 cut(s) 1135
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 6 cut(s) 95, 187, 540, 978, 1061, 1286
MspR9I CCNGG 3 cut(s) 187, 979, 1367
MvaI CCWGG 1 cut(s) 1367
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 9 cut(s) 351, 536, 545, 718, 1141, 1282, 1327, 1405, 1436
NaeI GCCGGC 2 cut(s) 541, 1062
NciI CCSGG 2 cut(s) 187, 979
NcoI CCATGG 2 cut(s) 454, 798
NdeII GATC 3 cut(s) 646, 951, 992
NgoMIV GCCGGC 2 cut(s) 539, 1060
NlaIII CATG 9 cut(s) 200, 228, 332, 432, 458, 653, 802, 862, 1444
NlaIV GGNNCC 2 cut(s) 994, 1290
NmuCI GTSAC 3 cut(s) 306, 793, 1369
NspI RCATGY 2 cut(s) 200, 332
OliI CACNNNNGTG 2 cut(s) 299, 1355
PciSI GCTCTTC 2 cut(s) 711, 1389
PcsI WCGNNNNNNNCGW 3 cut(s) 383, 389, 1158
PdiI GCCGGC 2 cut(s) 541, 1062
PdmI GAANNNNTTC 1 cut(s) 1201
PfeI GAWTC 2 cut(s) 738, 1343
PflFI GACNNNGTC 2 cut(s) 382, 509
PkrI GCNGC 3 cut(s) 881, 1426, 1429
PleI GAGTC 3 cut(s) 313, 433, 527
PpsI GAGTC 3 cut(s) 313, 433, 527
PshAI GACNNNNGTC 1 cut(s) 791
PshBI ATTAAT 1 cut(s) 1200
Psp124BI GAGCTC 1 cut(s) 1258
Psp6I CCWGG 1 cut(s) 1365
PspFI CCCAGC 1 cut(s) 1408
PspGI CCWGG 1 cut(s) 1365
PspN4I GGNNCC 2 cut(s) 994, 1290
PspPI GGNCC 2 cut(s) 118, 1288
PsrI GAACNNNNNNTAC 2 cut(s) 1305, 1337
PsuI RGATCY 1 cut(s) 992
PsyI GACNNNGTC 2 cut(s) 382, 509
RsaI GTAC 8 cut(s) 139, 243, 494, 595, 696, 863, 918, 1190
RsaNI GTAC 8 cut(s) 138, 242, 493, 594, 695, 862, 917, 1189
RseI CAYNNNNRTG 2 cut(s) 299, 1355
SacI GAGCTC 1 cut(s) 1258
SalI GTCGAC 2 cut(s) 584, 1298
SapI GCTCTTC 2 cut(s) 711, 1389
SaqAI TTAA 3 cut(s) 614, 935, 1200
SatI GCNGC 3 cut(s) 880, 1425, 1428
Sau3AI GATC 3 cut(s) 646, 951, 992
Sau96I GGNCC 2 cut(s) 118, 1288
SchI GAGTC 3 cut(s) 314, 434, 527
ScrFI CCNGG 3 cut(s) 187, 979, 1367
SduI GDGCHC 2 cut(s) 87, 1258
SexAI ACCWGGT 1 cut(s) 1365
SfaNI GCATC 4 cut(s) 26, 408, 714, 1411
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 118, 1288
SmiMI CAYNNNNRTG 2 cut(s) 299, 1355
SmlI CTYRAG 4 cut(s) 153, 250, 496, 613
SmoI CTYRAG 4 cut(s) 153, 250, 496, 613
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 7 cut(s) 69, 355, 626, 848, 1014, 1197, 1201
SsiI CCGC 5 cut(s) 514, 663, 1050, 1135, 1216
SspI AATATT 1 cut(s) 940
SspMI CTAG 4 cut(s) 23, 732, 1251, 1450
SstI GAGCTC 1 cut(s) 1258
StyD4I CCNGG 3 cut(s) 185, 977, 1365
StyI CCWWGG 3 cut(s) 454, 798, 1098
TaaI ACNGT 7 cut(s) 144, 246, 598, 694, 1057, 1154, 1162
TaiI ACGT 4 cut(s) 303, 386, 1116, 1143
TaqI TCGA 4 cut(s) 386, 435, 585, 1299
TaqII GACCGA 1 cut(s) 1285
TasI AATT 7 cut(s) 69, 355, 626, 848, 1014, 1197, 1201
TatI WGTACW 4 cut(s) 137, 694, 861, 1188
TfiI GAWTC 2 cut(s) 738, 1343
Tru1I TTAA 3 cut(s) 614, 935, 1200
Tru9I TTAA 3 cut(s) 614, 935, 1200
TscAI CASTG 4 cut(s) 147, 301, 315, 1060
TseFI GTSAC 3 cut(s) 306, 793, 1369
TseI GCWGC 3 cut(s) 879, 1424, 1427
Tsp45I GTSAC 3 cut(s) 306, 793, 1369
TspDTI ATGAA 4 cut(s) 32, 120, 847, 1194
TspGWI ACGGA 3 cut(s) 461, 881, 1005
TspRI CASTG 4 cut(s) 147, 301, 315, 1060
Tth111I GACNNNGTC 2 cut(s) 382, 509
Vha464I CTTAAG 1 cut(s) 613
VneI GTGCAC 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 118, 1288
VspI ATTAAT 1 cut(s) 1200
XapI RAATTY 2 cut(s) 626, 848
XceI RCATGY 2 cut(s) 200, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 1030
XmiI GTMKAC 3 cut(s) 585, 1167, 1299
XmnI GAANNNNTTC 1 cut(s) 1201
XspI CTAG 4 cut(s) 23, 732, 1251, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.