Rroxscaffold_4G00302080

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000217
Physical Location & Seq
Reverse (-)
22434327 .. 22435697
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302080.1

Sequence Viewer

Length: 1371 bp
ATGTTATCAGAAATTAAATTAAAATTTCGGGGTATTATACTCATCCTAAATGACTCTCCGGTGTACAATATTGCATTTGTACATGTCCAATCAGGACGTTATGTATATGCATCTGCCACTGACCTCAGCGACATGATACGCCTTCAATTACAGCTCGTTTCACTGACTATAGCCAGTGACAATGCCTTCAAGATCATCGACGTGGAGTCCATGGTGATATTGCCTAAGCATGTCGCGTTCAAAGGTGCTAACGGCAAATACCTTCAGGTGCAGATGGTGAACGACCGACCGTATCTGACATTCACATCCCCCGACAAGGGACTTCCAGAATCGTGGTTCGAGGTCTCTACAGATGGACACGGCAGGGTGCAAATATTGTCTTACACCAACAAAAACTTCTGGAGGTACGACGAAGCTAAGAATTGGATTTTGGCTGACAGCAGGGCCACCACTACTGTGGATGACGCGGTACTGTTTTGGCCGGTAAAGATCAACCAAAATGCCTTCGCTCTCAGATCCTTCAGCAGCGACAATTTTTGTGCACAATTGAGCTATGATGGCATGATAGCCGGTCTCAATGCTGCCTACCCCACCATTGCAGCAGAGACACGCCTGTTATTGGAAGAACTCGTGCTCTCAAGGAGAATTTACAATGCCGATTTCAACCTTTCCAATGCCATAATCTATGGCGAGACTCCAATCACAATGGCCACTGCGAACGCTAGTAATAACACCTCGGCAGACAACACTGTGGAGTTCAAGTTCACGTATACAGATACCAGGAGTAGTACGTGGAGTACCAGCCACTCATGGATGGTGGGTATGAGTGTCACCGCTAGCTTCAGAATTATTTTTGTTGGAAGTACCGAGGTGGAGGCTTCTGCTGAGTATTCCGGATCTTACGAGTGGGGAGAAGCTGTAACATCCGAAAATACATTAGAGACCACCTACACAGTTGTTGTGCCGGCAAACACTTCTATATCGGTGAGCCTGATGGCAACAAAGGGTTTCTGCGATGTTCCATTCACTTACTACCAACGAGATGTTCTATACAACGGCAAAACCGTTCTATACATGAAAGAGGATGGACTCTATACGGGGATCAATTCCTATAATTTTAGGTATGAGACCACAACCTTAACTCAAGCGAGATCTGAGCCTGAGACCAAGGAGCAGAAGCTTCCAGACCCATTGACTGACCCATCCACACAACAAAATCTCCCATTACCATTCGGAGCAACCCAAGTACAAAAACTTTCGCTGTCATCTGAGGCGGATACGACCCAAGAACCAAAGCTAACGCTGCCGTTAGAACAGGAGACCACTCGAGAGGTAGCATTGCCATCGGCAGAGACTCTAGAGGTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

456

Amino Acids

50.95

Weight (kDa)

4.76

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 77 - 168 6e-07 Agglutinin domain
Aerolysin PF01117 221 - 344 8.4e-07 Aerolysin toxin
ETX_MTX2 PF03318 230 - 341 6.3e-06 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 770
AccII CGCG 2 cut(s) 236, 467
AccIII TCCGGA 1 cut(s) 893
AciI CCGC 3 cut(s) 467, 834, 1274
AclWI GGATC 3 cut(s) 510, 904, 1109
AcoI YGGCCR 2 cut(s) 479, 708
AcsI RAATTY 2 cut(s) 23, 645
AcuI CTGAAG 3 cut(s) 248, 505, 826
AfaI GTAC 9 cut(s) 65, 81, 407, 471, 790, 799, 865, 1248, 1365
AfiI CCNNNNNNNGG 3 cut(s) 316, 317, 619
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 5 cut(s) 146, 190, 241, 664, 760
AhdI GACNNNNNGTC 1 cut(s) 205
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 779
AjuI GAANNNNNNNTTGG 6 cut(s) 380, 412, 413, 445, 1029, 1061
AleI CACNNNNGTG 1 cut(s) 455
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
AluBI AGCT 7 cut(s) 154, 416, 552, 840, 917, 1180, 1297
AluI AGCT 7 cut(s) 154, 416, 552, 840, 917, 1180, 1297
Alw21I GWGCWC 2 cut(s) 544, 636
Alw26I GTCTC 9 cut(s) 349, 578, 599, 686, 935, 1121, 1157, 1313, 1346
Alw44I GTGCAC 1 cut(s) 540
AlwI GGATC 3 cut(s) 510, 904, 1109
Ama87I CYCGRG 1 cut(s) 1326
Aor13HI TCCGGA 1 cut(s) 893
AoxI GGCC 3 cut(s) 444, 479, 708
ApaLI GTGCAC 1 cut(s) 540
ApeKI GCWGC 4 cut(s) 525, 581, 599, 1303
ApoI RAATTY 2 cut(s) 23, 645
AspS9I GGNCC 1 cut(s) 444
AsuHPI GGTGA 4 cut(s) 226, 289, 823, 997
AsuNHI GCTAGC 1 cut(s) 836
AvaI CYCGRG 1 cut(s) 1326
BaeGI GKGCMC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 710
BauI CACGAG 1 cut(s) 629
Bbv12I GWGCWC 2 cut(s) 544, 636
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 4 cut(s) 537, 568, 611, 1290
BccI CCATC 8 cut(s) 268, 347, 551, 808, 988, 1079, 1210, 1351
BceAI ACGGC 4 cut(s) 268, 376, 1072, 1291
BcgI CGANNNNNNTGC 2 cut(s) 1326, 1360
BciT130I CCWGG 1 cut(s) 781
BciVI GTATCC 1 cut(s) 1270
BcoDI GTCTC 9 cut(s) 349, 578, 599, 686, 935, 1121, 1157, 1313, 1346
BfaI CTAG 3 cut(s) 723, 837, 1358
BfmI CTRYAG 2 cut(s) 168, 348
BfuI GTATCC 1 cut(s) 1270
BglII AGATCT 1 cut(s) 1151
BisI GCNGC 4 cut(s) 526, 582, 600, 1304
BlsI GCNGC 4 cut(s) 527, 583, 601, 1305
Bme1390I CCNGG 1 cut(s) 781
BmeRI GACNNNNNGTC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 1326
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 781
BmsI GCATC 1 cut(s) 119
BmtI GCTAGC 1 cut(s) 840
BpmI CTGGAG 1 cut(s) 421
Bpu10I CCTNAGC 2 cut(s) 125, 225
BpuEI CTTGAG 2 cut(s) 622, 1128
BsaAI YACGTR 2 cut(s) 768, 792
BsaI GGTCTC 6 cut(s) 349, 578, 935, 1121, 1157, 1313
BsaJI CCNNGG 4 cut(s) 210, 735, 867, 1167
BsaWI WCCGGW 2 cut(s) 58, 893
BsaXI ACNNNNNCTCC 6 cut(s) 746, 776, 903, 933, 1203, 1233
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 317, 619
Bse118I RCCGGY 3 cut(s) 481, 569, 964
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 2 cut(s) 594, 1337
BseAI TCCGGA 1 cut(s) 893
BseBI CCWGG 1 cut(s) 781
BseDI CCNNGG 4 cut(s) 210, 735, 867, 1167
BseGI GGATG 7 cut(s) 42, 305, 466, 819, 923, 1090, 1202
BseLI CCNNNNNNNGG 3 cut(s) 316, 317, 619
BseMI GCAATG 2 cut(s) 594, 1337
BseMII CTCAG 6 cut(s) 139, 526, 876, 1146, 1152, 1260
BseNI ACTGG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 4 cut(s) 537, 568, 611, 1290
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 2 cut(s) 236, 467
Bsh1285I CGRYCG 2 cut(s) 286, 290
BshFI GGCC 3 cut(s) 446, 481, 710
BsiEI CGRYCG 2 cut(s) 286, 290
BsiHKAI GWGCWC 2 cut(s) 544, 636
BsiHKCI CYCGRG 1 cut(s) 1326
BsiSI CCGG 5 cut(s) 59, 482, 570, 894, 965
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 3 cut(s) 316, 317, 619
BsmAI GTCTC 9 cut(s) 349, 578, 599, 686, 935, 1121, 1157, 1313, 1346
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 3 cut(s) 446, 481, 710
Bso31I GGTCTC 6 cut(s) 349, 578, 935, 1121, 1157, 1313
BsoBI CYCGRG 1 cut(s) 1326
Bsp1286I GDGCHC 2 cut(s) 544, 636
Bsp13I TCCGGA 1 cut(s) 893
Bsp1407I TGTACA 2 cut(s) 63, 79
Bsp143I GATC 6 cut(s) 192, 489, 515, 896, 1101, 1151
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 3 cut(s) 467, 834, 1274
BspANI GGCC 3 cut(s) 446, 481, 710
BspCNI CTCAG 6 cut(s) 138, 525, 877, 1147, 1153, 1261
BspEI TCCGGA 1 cut(s) 893
BspFNI CGCG 2 cut(s) 236, 467
BspOI GCTAGC 1 cut(s) 840
BspPI GGATC 3 cut(s) 510, 904, 1109
BspTNI GGTCTC 6 cut(s) 349, 578, 935, 1121, 1157, 1313
BsrDI GCAATG 2 cut(s) 594, 1337
BsrFI RCCGGY 3 cut(s) 481, 569, 964
BsrGI TGTACA 2 cut(s) 63, 79
BsrI ACTGG 1 cut(s) 174
BssAI RCCGGY 3 cut(s) 481, 569, 964
BssECI CCNNGG 4 cut(s) 210, 735, 867, 1167
BssMI GATC 6 cut(s) 192, 489, 515, 896, 1101, 1151
BssNAI GTATAC 1 cut(s) 771
BssSI CACGAG 1 cut(s) 629
BssT1I CCWWGG 2 cut(s) 210, 1167
Bst1107I GTATAC 1 cut(s) 771
Bst2BI CACGAG 1 cut(s) 629
Bst2UI CCWGG 1 cut(s) 781
Bst4CI ACNGT 6 cut(s) 291, 457, 474, 751, 955, 1066
BstAUI TGTACA 2 cut(s) 63, 79
BstBAI YACGTR 2 cut(s) 768, 792
BstC8I GCNNGC 2 cut(s) 838, 966
BstDEI CTNAG 8 cut(s) 125, 225, 417, 512, 885, 1155, 1161, 1269
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 7 cut(s) 42, 305, 466, 819, 923, 1090, 1202
BstFNI CGCG 2 cut(s) 236, 467
BstKTI GATC 6 cut(s) 195, 492, 518, 899, 1104, 1154
BstMAI GTCTC 9 cut(s) 349, 578, 599, 686, 935, 1121, 1157, 1313, 1346
BstMBI GATC 6 cut(s) 192, 489, 515, 896, 1101, 1151
BstMCI CGRYCG 2 cut(s) 286, 290
BstMWI GCNNNNNNNGC 2 cut(s) 558, 1303
BstNI CCWGG 1 cut(s) 781
BstNSI RCATGY 2 cut(s) 86, 233
BstSCI CCNGG 1 cut(s) 779
BstSFI CTRYAG 2 cut(s) 168, 348
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 2 cut(s) 236, 467
BstV1I GCAGC 4 cut(s) 537, 568, 611, 1290
BstX2I RGATCY 3 cut(s) 515, 896, 1151
BstXI CCANNNNNNTGG 2 cut(s) 333, 457
BstYI RGATCY 3 cut(s) 515, 896, 1151
BstZ17I GTATAC 1 cut(s) 771
BsuI GTATCC 1 cut(s) 1270
BsuRI GGCC 3 cut(s) 446, 481, 710
BtgI CCRYGG 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 1029
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 7 cut(s) 42, 305, 466, 819, 923, 1090, 1202
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 5 cut(s) 117, 161, 181, 711, 747
Cac8I GCNNGC 2 cut(s) 838, 966
Cfr10I RCCGGY 3 cut(s) 481, 569, 964
Cfr13I GGNCC 1 cut(s) 444
CseI GACGC 1 cut(s) 473
Csp6I GTAC 9 cut(s) 64, 80, 406, 470, 789, 798, 864, 1247, 1364
CviAII CATG 7 cut(s) 83, 133, 211, 230, 562, 810, 1075
CviQI GTAC 9 cut(s) 64, 80, 406, 470, 789, 798, 864, 1247, 1364
DdeI CTNAG 8 cut(s) 125, 225, 417, 512, 885, 1155, 1161, 1269
DpnI GATC 6 cut(s) 194, 491, 517, 898, 1103, 1153
DpnII GATC 6 cut(s) 192, 489, 515, 896, 1101, 1151
DriI GACNNNNNGTC 1 cut(s) 205
EaeI YGGCCR 2 cut(s) 479, 708
Eam1105I GACNNNNNGTC 1 cut(s) 205
EciI GGCGGA 1 cut(s) 1289
Eco130I CCWWGG 2 cut(s) 210, 1167
Eco31I GGTCTC 6 cut(s) 349, 578, 935, 1121, 1157, 1313
Eco57I CTGAAG 3 cut(s) 248, 505, 826
Eco88I CYCGRG 1 cut(s) 1326
EcoRII CCWGG 1 cut(s) 779
EcoT14I CCWWGG 2 cut(s) 210, 1167
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 2 cut(s) 210, 1167
FaeI CATG 7 cut(s) 86, 136, 214, 233, 565, 813, 1078
FaqI GGGAC 1 cut(s) 333
FatI CATG 7 cut(s) 82, 132, 210, 229, 561, 809, 1074
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 4 cut(s) 526, 582, 600, 1304
FokI GGATG 7 cut(s) 29, 292, 473, 826, 910, 1097, 1189
Fsp4HI GCNGC 4 cut(s) 526, 582, 600, 1304
FspBI CTAG 3 cut(s) 723, 837, 1358
GluI GCNGC 4 cut(s) 526, 582, 600, 1304
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 3 cut(s) 446, 481, 710
HapII CCGG 5 cut(s) 59, 482, 570, 894, 965
HgaI GACGC 1 cut(s) 473
Hin1II CATG 7 cut(s) 86, 136, 214, 233, 565, 813, 1078
HindIII AAGCTT 1 cut(s) 1178
HinfI GANTC 6 cut(s) 53, 206, 329, 694, 1089, 1354
HpaII CCGG 5 cut(s) 59, 482, 570, 894, 965
HphI GGTGA 4 cut(s) 226, 289, 823, 997
Hpy166II GTNNAC 5 cut(s) 64, 280, 542, 765, 771
Hpy188I TCNGA 8 cut(s) 10, 297, 515, 845, 928, 1156, 1235, 1270
Hpy188III TCNNGA 8 cut(s) 93, 190, 326, 400, 894, 1184, 1328, 1358
Hpy8I GTNNAC 5 cut(s) 64, 280, 542, 765, 771
Hpy99I CGWCG 2 cut(s) 203, 413
HpyAV CCTTC 5 cut(s) 152, 196, 272, 514, 529
HpyCH4III ACNGT 6 cut(s) 291, 457, 474, 751, 955, 1066
HpyCH4IV ACGT 4 cut(s) 97, 201, 767, 791
HpyCH4V TGCA 6 cut(s) 74, 110, 271, 370, 542, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 558, 1303
HpyF3I CTNAG 8 cut(s) 125, 225, 417, 512, 885, 1155, 1161, 1269
HpySE526I ACGT 4 cut(s) 97, 201, 767, 791
Hsp92II CATG 7 cut(s) 86, 136, 214, 233, 565, 813, 1078
Kpn2I TCCGGA 1 cut(s) 893
KroI GCCGGC 1 cut(s) 964
KroNI GCCGGC 1 cut(s) 966
Kzo9I GATC 6 cut(s) 192, 489, 515, 896, 1101, 1151
LmnI GCTCC 2 cut(s) 1171, 1235
Lsp1109I GCAGC 4 cut(s) 537, 568, 611, 1290
LweI GCATC 1 cut(s) 119
MaeI CTAG 3 cut(s) 723, 837, 1358
MaeII ACGT 4 cut(s) 97, 201, 767, 791
MaeIII GTNAC 3 cut(s) 176, 829, 919
MalI GATC 6 cut(s) 194, 491, 517, 898, 1103, 1153
MboI GATC 6 cut(s) 192, 489, 515, 896, 1101, 1151
MboII GAAGA 1 cut(s) 635
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 3 cut(s) 515, 896, 1151
MhlI GDGCHC 2 cut(s) 544, 636
MlsI TGGCCA 1 cut(s) 710
MluNI TGGCCA 1 cut(s) 710
MlyI GAGTC 5 cut(s) 47, 215, 688, 1083, 1348
MmeI TCCRAC 1 cut(s) 838
Mox20I TGGCCA 1 cut(s) 710
Mph1103I ATGCAT 1 cut(s) 112
MroI TCCGGA 1 cut(s) 893
MroNI GCCGGC 1 cut(s) 964
MscI TGGCCA 1 cut(s) 710
MseI TTAA 3 cut(s) 15, 20, 1139
MslI CAYNNNNRTG 2 cut(s) 200, 455
Msp20I TGGCCA 1 cut(s) 710
MspI CCGG 5 cut(s) 59, 482, 570, 894, 965
MspR9I CCNGG 1 cut(s) 781
MunI CAATTG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 781
MvnI CGCG 2 cut(s) 236, 467
MwoI GCNNNNNNNGC 2 cut(s) 558, 1303
NaeI GCCGGC 1 cut(s) 966
NcoI CCATGG 1 cut(s) 210
NdeII GATC 6 cut(s) 192, 489, 515, 896, 1101, 1151
NgoMIV GCCGGC 1 cut(s) 964
NheI GCTAGC 1 cut(s) 836
NlaIII CATG 7 cut(s) 86, 136, 214, 233, 565, 813, 1078
NmeAIII GCCGAG 1 cut(s) 716
NmuCI GTSAC 2 cut(s) 176, 829
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 2 cut(s) 86, 233
OliI CACNNNNGTG 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 1326
PciI ACATGT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 1062
PdiI GCCGGC 1 cut(s) 966
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 527, 583, 601, 1305
PleI GAGTC 5 cut(s) 47, 214, 688, 1083, 1348
PpsI GAGTC 5 cut(s) 47, 214, 688, 1083, 1348
Ppu21I YACGTR 2 cut(s) 768, 792
PscI ACATGT 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 779
PspGI CCWGG 1 cut(s) 779
PspPI GGNCC 1 cut(s) 444
PsuI RGATCY 3 cut(s) 515, 896, 1151
RsaI GTAC 9 cut(s) 65, 81, 407, 471, 790, 799, 865, 1248, 1365
RsaNI GTAC 9 cut(s) 64, 80, 406, 470, 789, 798, 864, 1247, 1364
RseI CAYNNNNRTG 2 cut(s) 200, 455
SaqAI TTAA 3 cut(s) 15, 20, 1139
SatI GCNGC 4 cut(s) 526, 582, 600, 1304
Sau3AI GATC 6 cut(s) 192, 489, 515, 896, 1101, 1151
Sau96I GGNCC 1 cut(s) 444
SchI GAGTC 5 cut(s) 47, 215, 688, 1083, 1348
ScrFI CCNGG 1 cut(s) 781
SduI GDGCHC 2 cut(s) 544, 636
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 2 cut(s) 168, 348
Sfr274I CTCGAG 1 cut(s) 1326
SlaI CTCGAG 1 cut(s) 1326
SmiMI CAYNNNNRTG 2 cut(s) 200, 455
SmlI CTYRAG 3 cut(s) 637, 1143, 1326
SmoI CTYRAG 3 cut(s) 637, 1143, 1326
SsiI CCGC 3 cut(s) 467, 834, 1274
SspI AATATT 2 cut(s) 70, 375
SspMI CTAG 3 cut(s) 723, 837, 1358
StyD4I CCNGG 1 cut(s) 779
StyI CCWWGG 2 cut(s) 210, 1167
TaaI ACNGT 6 cut(s) 291, 457, 474, 751, 955, 1066
TaiI ACGT 4 cut(s) 100, 204, 770, 794
TaqI TCGA 3 cut(s) 198, 339, 1327
TaqII GACCGA 1 cut(s) 300
TatI WGTACW 3 cut(s) 63, 79, 1246
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 15, 20, 1139
Tru9I TTAA 3 cut(s) 15, 20, 1139
TscAI CASTG 5 cut(s) 124, 168, 181, 718, 754
TseFI GTSAC 2 cut(s) 176, 829
TseI GCWGC 4 cut(s) 525, 581, 599, 1303
Tsp45I GTSAC 2 cut(s) 176, 829
TspDTI ATGAA 1 cut(s) 1091
TspRI CASTG 5 cut(s) 124, 168, 181, 718, 754
VneI GTGCAC 1 cut(s) 540
XapI RAATTY 2 cut(s) 23, 645
XbaI TCTAGA 1 cut(s) 1357
XceI RCATGY 2 cut(s) 86, 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 1326
XmiI GTMKAC 1 cut(s) 770
XspI CTAG 3 cut(s) 723, 837, 1358
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.