FvH4_7g07080

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000217
Physical Location & Seq
Reverse (-)
7060190 .. 7060762
573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07080.t1

Sequence Viewer

Length: 573 bp
ATGATAGAGGTTGAGATTGATAGAAGAGAGAATCCGAGTGATGAAATCATAATACCAAGATTTGTGGTTTTGAAATCAAACAACAACAAATACCTGAGCTACACAAAAGTTAGTGAGGGAACTGTTGATCAGGCGCCCACAGGATTTCTCAAGTTCTTTGGAGAAGAAGTTGGGAGCCATTATGCAAAGTTCGAAGTGGAAATGGCAAAGAGCAGTGAGAACCAAGGACTAGTCCAAATAAAATGTTGCTACAACAATAAATACTTGGTAAGGCTTCTTGGGACAAATACGCTAGACCATGATCGTTGGATTGTTGCGCAAGCTGAGAAGCCGGAGGAGAATAGGTCGAAGAGTTCGTGTACCTTGTTTGAGCCTATTATCACTATAGAAGAATTAAGTAATCCAACTGTTGATAAGGACGATGATGATCATGCCACTAGTGATGGTGGTGATGGTGAGAATGATGATATTGTCGAACAACGTCAAGATCCGGAAGTCATCAATACTCATCTTGATTCTGATGTCATTGAGCACCTTCAAGATCATGATGCCACTGAAAAACACTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

191

Amino Acids

21.6

Weight (kDa)

4.58

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 19 - 127 3.7e-16 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 133
AccIII TCCGGA 1 cut(s) 490
AclWI GGATC 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 361
AgsI TTSAA 2 cut(s) 73, 539
AhlI ACTAGT 2 cut(s) 229, 437
AluBI AGCT 2 cut(s) 99, 323
AluI AGCT 2 cut(s) 99, 323
Alw21I GWGCWC 1 cut(s) 534
AlwI GGATC 1 cut(s) 482
Aor13HI TCCGGA 1 cut(s) 490
AspLEI GCGC 2 cut(s) 136, 319
AsuHPI GGTGA 2 cut(s) 461, 467
AsuII TTCGAA 1 cut(s) 192
BanI GGYRCC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 534
BccI CCATC 2 cut(s) 437, 446
BclI TGATCA 2 cut(s) 127, 427
BcuI ACTAGT 2 cut(s) 229, 437
BfaI CTAG 3 cut(s) 230, 293, 438
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 135, 176
BmsI GCATC 1 cut(s) 538
Bpu10I CCTNAGC 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 329, 359
Bse8I GATNNNNATC 1 cut(s) 426
BseAI TCCGGA 1 cut(s) 490
BseDI CCNNGG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 426
BseMII CTCAG 2 cut(s) 86, 315
BseRI GAGGAG 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 2 cut(s) 332, 491
BslFI GGGAC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 534
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 5 cut(s) 127, 301, 427, 487, 541
BspCNI CTCAG 2 cut(s) 87, 316
BspEI TCCGGA 1 cut(s) 490
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 135, 176
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 5 cut(s) 127, 301, 427, 487, 541
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 124, 409
Bst6I CTCTTC 2 cut(s) 19, 344
BstACI GRCGYC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 95, 324
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 2 cut(s) 136, 319
BstKTI GATC 5 cut(s) 130, 304, 430, 490, 544
BstMBI GATC 5 cut(s) 127, 301, 427, 487, 541
BstSFI CTRYAG 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 220, 552
Cac8I GCNNGC 1 cut(s) 321
CciI TCATGA 1 cut(s) 544
CfoI GCGC 2 cut(s) 136, 319
Csp6I GTAC 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 3 cut(s) 299, 431, 545
CviJI RGCY 6 cut(s) 99, 177, 274, 323, 331, 373
CviKI_1 RGCY 6 cut(s) 99, 177, 274, 323, 331, 373
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 2 cut(s) 95, 324
DinI GGCGCC 1 cut(s) 135
DpnI GATC 5 cut(s) 129, 303, 429, 489, 543
DpnII GATC 5 cut(s) 127, 301, 427, 487, 541
Eam1104I CTCTTC 2 cut(s) 19, 344
EarI CTCTTC 2 cut(s) 19, 344
Eco130I CCWWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 223
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 3 cut(s) 302, 434, 548
FaiI YATR 6 cut(s) 50, 183, 300, 386, 432, 546
FaqI GGGAC 1 cut(s) 295
FatI CATG 3 cut(s) 298, 430, 544
FbaI TGATCA 2 cut(s) 127, 427
FspBI CTAG 3 cut(s) 230, 293, 438
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 2 cut(s) 135, 318
HaeII RGCGCY 1 cut(s) 137
HapII CCGG 2 cut(s) 332, 491
HhaI GCGC 2 cut(s) 136, 319
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 302, 434, 548
Hin6I GCGC 2 cut(s) 134, 317
HinP1I GCGC 2 cut(s) 134, 317
HinfI GANTC 2 cut(s) 31, 515
HpaII CCGG 2 cut(s) 332, 491
HphI GGTGA 2 cut(s) 461, 467
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 2 cut(s) 36, 520
Hpy188III TCNNGA 5 cut(s) 485, 491, 512, 539, 545
Hpy8I GTNNAC 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 2 cut(s) 124, 409
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 95, 324
HpySE526I ACGT 1 cut(s) 481
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 302, 434, 548
HspAI GCGC 2 cut(s) 134, 317
KasI GGCGCC 1 cut(s) 133
Kpn2I TCCGGA 1 cut(s) 490
Ksp22I TGATCA 2 cut(s) 127, 427
Kzo9I GATC 5 cut(s) 127, 301, 427, 487, 541
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 5 cut(s) 107, 116, 126, 345, 504
LweI GCATC 1 cut(s) 538
MaeI CTAG 3 cut(s) 230, 293, 438
MaeII ACGT 1 cut(s) 481
MalI GATC 5 cut(s) 129, 303, 429, 489, 543
MboI GATC 5 cut(s) 127, 301, 427, 487, 541
MboII GAAGA 4 cut(s) 36, 176, 361, 401
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 1 cut(s) 392
Mly113I GGCGCC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 287, 428
MnlI CCTC 2 cut(s) 109, 328
MroI TCCGGA 1 cut(s) 490
MseI TTAA 1 cut(s) 395
MspI CCGG 2 cut(s) 332, 491
NarI GGCGCC 1 cut(s) 134
NdeII GATC 5 cut(s) 127, 301, 427, 487, 541
NlaIII CATG 3 cut(s) 302, 434, 548
NlaIV GGNNCC 2 cut(s) 135, 176
NsbI TGCGCA 1 cut(s) 318
NspV TTCGAA 1 cut(s) 192
PagI TCATGA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PfeI GAWTC 2 cut(s) 31, 515
PluTI GGCGCC 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 135, 176
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 395
Sau3AI GATC 5 cut(s) 127, 301, 427, 487, 541
SduI GDGCHC 1 cut(s) 534
SetI ASST 8 cut(s) 12, 96, 101, 325, 347, 365, 484, 537
SfaNI GCATC 1 cut(s) 538
SfcI CTRYAG 1 cut(s) 384
SfoI GGCGCC 1 cut(s) 135
SfuI TTCGAA 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SpeI ACTAGT 2 cut(s) 229, 437
Sse9I AATT 1 cut(s) 392
SspDI GGCGCC 1 cut(s) 133
SspMI CTAG 3 cut(s) 230, 293, 438
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 124, 409
TaiI ACGT 1 cut(s) 484
TaqI TCGA 3 cut(s) 192, 347, 474
TasI AATT 1 cut(s) 392
TfiI GAWTC 2 cut(s) 31, 515
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 2 cut(s) 220, 559
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 2 cut(s) 220, 559
XspI CTAG 3 cut(s) 230, 293, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.