Rmu_sc0003462.1_g000002

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003462.1
OG0000217
Physical Location & Seq
Reverse (-)
6877 .. 7722
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003462.1_g000002.1.cds

Sequence Viewer

Length: 846 bp
atgttgatgtctagttctataaggctttacaccgaaaacacgtccgacgacactttgttttggcctgtcaaaatccaagacaatgtcattgctcttctcaacttgggtaacaaaaatttttgcggtggactcaccaccgaatacaaaaccaactgtctcaacgccgcctaccctaatatctgtaaacagtcaaagctggtggtggaagagcttgttctttcaaggaacatctacaatatcaatttccgactctccgactccaggatctaccacgagcaggtcatagaaatgggcacagcactcgccgttaatgacagcccaaacagagactccactatcagcctcaagtttgcggaaaaagattccaggacccgtagttggaatggcagcgtttcattgaagttgggtgtcaaaacaactctcgaagtcaaatctgttccactaattcttaacggaaatatcgaactttcggctgaggttacgacagcatgccagtggggagaaactaccacagttgaacataccagggaagccaattatgctgttgttgtgccaccactatccaagatgaaggtgagtctcatagcttcaagggcttcatgcgatgtgcccttctcgtacagtcaacgtgacattctcactgatggccgaaccgttaccaaaaccatggatgatggccctttcactgggattaatgcctacaaatttgactaccaaaaccaggcatcctacgatggccagcctctctctgtctctagcccatggaggctcccgcgcgctgtgtactttgggatttgtgtgattctggtgtttagtgtgttgctgcctttgctgcatttggtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

281

Amino Acids

31.31

Weight (kDa)

6.82

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccII CGCG 2 cut(s) 775, 777
AciI CCGC 4 cut(s) 123, 165, 353, 773
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 2 cut(s) 646, 736
AcsI RAATTY 2 cut(s) 115, 704
AfaI GTAC 2 cut(s) 620, 785
AfiI CCNNNNNNNGG 5 cut(s) 261, 277, 378, 686, 721
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 4 cut(s) 222, 400, 518, 591
AjiI CACGTC 1 cut(s) 42
AjnI CCWGG 4 cut(s) 260, 365, 524, 720
AluBI AGCT 3 cut(s) 196, 211, 587
AluI AGCT 3 cut(s) 196, 211, 587
Alw26I GTCTC 4 cut(s) 161, 321, 584, 757
AlwI GGATC 1 cut(s) 272
AoxI GGCC 4 cut(s) 62, 646, 676, 736
ApeKI GCWGC 3 cut(s) 387, 823, 832
ApoI RAATTY 2 cut(s) 115, 704
AseI ATTAAT 1 cut(s) 693
AspLEI GCGC 2 cut(s) 777, 779
AspS9I GGNCC 2 cut(s) 369, 677
AsuHPI GGTGA 2 cut(s) 124, 586
AvaII GGWCC 1 cut(s) 369
BaeGI GKGCMC 2 cut(s) 296, 612
BalI TGGCCA 1 cut(s) 738
BauI CACGAG 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 399, 810, 819
BccI CCATC 3 cut(s) 638, 668, 728
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 4 cut(s) 262, 367, 526, 722
BcoDI GTCTC 4 cut(s) 161, 321, 584, 757
BfaI CTAG 2 cut(s) 12, 756
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 4 cut(s) 165, 388, 824, 833
BlsI GCNGC 4 cut(s) 166, 389, 825, 834
Bme1390I CCNGG 4 cut(s) 262, 367, 526, 722
Bme18I GGWCC 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 369, 677
BmiI GGNNCC 2 cut(s) 371, 770
BmrFI CCNGG 4 cut(s) 262, 367, 526, 722
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 1 cut(s) 734
BmuI ACTGGG 1 cut(s) 696
BpmI CTGGAG 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 525, 666, 761
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 5 cut(s) 261, 277, 378, 686, 721
Bse1I ACTGG 2 cut(s) 493, 691
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 4 cut(s) 262, 367, 526, 722
BseDI CCNNGG 3 cut(s) 525, 666, 761
BseGI GGATG 2 cut(s) 676, 725
BseLI CCNNNNNNNGG 5 cut(s) 261, 277, 378, 686, 721
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 493, 691
BsePI GCGCGC 1 cut(s) 775
BseSI GKGCMC 2 cut(s) 296, 612
BseXI GCAGC 3 cut(s) 399, 810, 819
Bsh1236I CGCG 2 cut(s) 775, 777
BshFI GGCC 4 cut(s) 64, 648, 678, 738
BslI CCNNNNNNNGG 5 cut(s) 261, 277, 378, 686, 721
BsmAI GTCTC 4 cut(s) 161, 321, 584, 757
BsnI GGCC 4 cut(s) 64, 648, 678, 738
Bsp1286I GDGCHC 2 cut(s) 296, 612
Bsp143I GATC 1 cut(s) 264
Bsp19I CCATGG 2 cut(s) 666, 761
BspACI CCGC 4 cut(s) 123, 165, 353, 773
BspANI GGCC 4 cut(s) 64, 648, 678, 738
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 2 cut(s) 775, 777
BspLI GGNNCC 2 cut(s) 371, 770
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 2 cut(s) 99, 201
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 2 cut(s) 493, 691
BssECI CCNNGG 3 cut(s) 525, 666, 761
BssHII GCGCGC 1 cut(s) 775
BssMI GATC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 2 cut(s) 666, 761
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 4 cut(s) 262, 367, 526, 722
Bst4CI ACNGT 5 cut(s) 155, 189, 514, 623, 655
Bst6I CTCTTC 2 cut(s) 99, 201
BstC8I GCNNGC 3 cut(s) 490, 740, 777
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 2 cut(s) 666, 761
BstF5I GGATG 2 cut(s) 676, 725
BstFNI CGCG 2 cut(s) 775, 777
BstHHI GCGC 2 cut(s) 777, 779
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 4 cut(s) 161, 321, 584, 757
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 4 cut(s) 539, 593, 829, 832
BstNI CCWGG 4 cut(s) 262, 367, 526, 722
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 4 cut(s) 260, 365, 524, 720
BstSLI GKGCMC 2 cut(s) 296, 612
BstUI CGCG 2 cut(s) 775, 777
BstV1I GCAGC 3 cut(s) 399, 810, 819
BstX2I RGATCY 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 4 cut(s) 64, 648, 678, 738
BtgI CCRYGG 2 cut(s) 666, 761
BtgZI GCGATG 1 cut(s) 618
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 2 cut(s) 676, 725
BtsIMutI CAGTG 3 cut(s) 500, 639, 684
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 490, 740, 777
CfoI GCGC 2 cut(s) 777, 779
Cfr13I GGNCC 2 cut(s) 369, 677
Csp6I GTAC 2 cut(s) 619, 784
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 4 cut(s) 489, 600, 667, 762
CviQI GTAC 2 cut(s) 619, 784
DdeI CTNAG 1 cut(s) 474
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 2 cut(s) 646, 736
Eam1104I CTCTTC 2 cut(s) 99, 201
EarI CTCTTC 2 cut(s) 99, 201
Eco130I CCWWGG 2 cut(s) 666, 761
Eco47I GGWCC 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 369
EcoRII CCWGG 4 cut(s) 260, 365, 524, 720
EcoT14I CCWWGG 2 cut(s) 666, 761
ErhI CCWWGG 2 cut(s) 666, 761
FaeI CATG 4 cut(s) 492, 603, 670, 765
FaiI YATR 9 cut(s) 20, 284, 490, 522, 540, 584, 601, 668, 763
FatI CATG 4 cut(s) 488, 599, 666, 761
FauI CCCGC 1 cut(s) 780
Fnu4HI GCNGC 4 cut(s) 165, 388, 824, 833
FokI GGATG 2 cut(s) 683, 712
Fsp4HI GCNGC 4 cut(s) 165, 388, 824, 833
FspBI CTAG 2 cut(s) 12, 756
GlaI GCGC 2 cut(s) 776, 778
GluI GCNGC 4 cut(s) 165, 388, 824, 833
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 4 cut(s) 64, 648, 678, 738
HhaI GCGC 2 cut(s) 777, 779
Hin1II CATG 4 cut(s) 492, 603, 670, 765
Hin6I GCGC 2 cut(s) 775, 777
HinP1I GCGC 2 cut(s) 775, 777
HincII GTYRAC 1 cut(s) 626
HindII GTYRAC 1 cut(s) 626
HinfI GANTC 7 cut(s) 129, 249, 257, 329, 362, 577, 802
HphI GGTGA 2 cut(s) 124, 586
Hpy166II GTNNAC 4 cut(s) 128, 185, 626, 784
Hpy188I TCNGA 3 cut(s) 46, 248, 256
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 4 cut(s) 128, 185, 626, 784
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 565, 622
HpyCH4III ACNGT 5 cut(s) 155, 189, 514, 623, 655
HpyCH4IV ACGT 2 cut(s) 41, 628
HpyCH4V TGCA 1 cut(s) 835
HpyF10VI GCNNNNNNNGC 4 cut(s) 539, 593, 829, 832
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 2 cut(s) 41, 628
Hsp92II CATG 4 cut(s) 492, 603, 670, 765
HspAI GCGC 2 cut(s) 775, 777
Kzo9I GATC 1 cut(s) 264
LguI GCTCTTC 2 cut(s) 99, 201
LmnI GCTCC 1 cut(s) 774
Lsp1109I GCAGC 3 cut(s) 399, 810, 819
LweI GCATC 1 cut(s) 734
MaeI CTAG 2 cut(s) 12, 756
MaeII ACGT 2 cut(s) 41, 628
MaeIII GTNAC 4 cut(s) 107, 478, 629, 655
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 86, 218
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 2 cut(s) 296, 612
MlsI TGGCCA 1 cut(s) 738
MluCI AATT 5 cut(s) 115, 241, 444, 535, 704
MluNI TGGCCA 1 cut(s) 738
MlyI GAGTC 5 cut(s) 123, 243, 251, 323, 586
MmeI TCCRAC 4 cut(s) 69, 271, 279, 359
MnlI CCTC 4 cut(s) 353, 469, 753, 759
Mox20I TGGCCA 1 cut(s) 738
MscI TGGCCA 1 cut(s) 738
MseI TTAA 3 cut(s) 309, 450, 693
MslI CAYNNNNRTG 2 cut(s) 287, 493
Msp20I TGGCCA 1 cut(s) 738
MspR9I CCNGG 4 cut(s) 262, 367, 526, 722
MvaI CCWGG 4 cut(s) 262, 367, 526, 722
MvnI CGCG 2 cut(s) 775, 777
MwoI GCNNNNNNNGC 4 cut(s) 539, 593, 829, 832
NcoI CCATGG 2 cut(s) 666, 761
NdeII GATC 1 cut(s) 264
NlaIII CATG 4 cut(s) 492, 603, 670, 765
NlaIV GGNNCC 2 cut(s) 371, 770
NmuCI GTSAC 1 cut(s) 629
NspI RCATGY 1 cut(s) 492
PaeI GCATGC 1 cut(s) 492
PauI GCGCGC 1 cut(s) 775
PciSI GCTCTTC 2 cut(s) 99, 201
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 2 cut(s) 362, 802
PflFI GACNNNGTC 1 cut(s) 83
PfoI TCCNGGA 2 cut(s) 260, 365
PkrI GCNGC 4 cut(s) 166, 389, 825, 834
PleI GAGTC 5 cut(s) 123, 243, 251, 323, 585
PpsI GAGTC 5 cut(s) 123, 243, 251, 323, 585
PpuMI RGGWCCY 1 cut(s) 369
PshBI ATTAAT 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 4 cut(s) 260, 365, 524, 720
PspGI CCWGG 4 cut(s) 260, 365, 524, 720
PspN4I GGNNCC 2 cut(s) 371, 770
PspPI GGNCC 2 cut(s) 369, 677
PspPPI RGGWCCY 1 cut(s) 369
PsuI RGATCY 1 cut(s) 264
PsyI GACNNNGTC 1 cut(s) 83
PteI GCGCGC 1 cut(s) 775
RsaI GTAC 2 cut(s) 620, 785
RsaNI GTAC 2 cut(s) 619, 784
RseI CAYNNNNRTG 2 cut(s) 287, 493
SapI GCTCTTC 2 cut(s) 99, 201
SaqAI TTAA 3 cut(s) 309, 450, 693
SatI GCNGC 4 cut(s) 165, 388, 824, 833
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 2 cut(s) 369, 677
SchI GAGTC 5 cut(s) 123, 243, 251, 323, 586
ScrFI CCNGG 4 cut(s) 262, 367, 526, 722
SduI GDGCHC 2 cut(s) 296, 612
SetI ASST 8 cut(s) 44, 198, 213, 282, 480, 576, 589, 631
SfaNI GCATC 1 cut(s) 734
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 287, 493
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 492
Sse9I AATT 5 cut(s) 115, 241, 444, 535, 704
SsiI CCGC 4 cut(s) 123, 165, 353, 773
SspMI CTAG 2 cut(s) 12, 756
StyD4I CCNGG 4 cut(s) 260, 365, 524, 720
StyI CCWWGG 2 cut(s) 666, 761
TaaI ACNGT 5 cut(s) 155, 189, 514, 623, 655
TaiI ACGT 2 cut(s) 44, 631
TaqI TCGA 2 cut(s) 423, 462
TasI AATT 5 cut(s) 115, 241, 444, 535, 704
TatI WGTACW 1 cut(s) 783
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 362, 802
Tru1I TTAA 3 cut(s) 309, 450, 693
Tru9I TTAA 3 cut(s) 309, 450, 693
TscAI CASTG 3 cut(s) 500, 646, 691
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 3 cut(s) 387, 823, 832
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 3 cut(s) 384, 584, 588
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 3 cut(s) 500, 646, 691
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 369
VspI ATTAAT 1 cut(s) 693
XapI RAATTY 2 cut(s) 115, 704
XceI RCATGY 1 cut(s) 492
XspI CTAG 2 cut(s) 12, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.