Rroxscaffold_2G00087140

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000217
Physical Location & Seq
Reverse (-)
9245530 .. 9247584
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087140.1

Sequence Viewer

Length: 237 bp
ATGTGGCTTTCAAAGGTCACACCGGAATTACCTTCACTTGTGGCGGATGCTAAGCTCAAGTTCATATCCACCGATAAGGGGATTCCCGAGTCCTGGTTTGAGGTGTCCACCGATGGCAATGGAAGGGTGCAAATCAAATCCTACCACGACAATAGCTACTTTTTTAACAACGGTGACGAGATTTGGTCGACCCAAAGGTTGCCGCCACCGATCCTAGCACCTTGTTTTGGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

78

Amino Acids

8.84

Weight (kDa)

5.65

Isoelectric Point (pI)

22.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 188
AciI CCGC 2 cut(s) 44, 203
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 229
AfiI CCNNNNNNNGG 3 cut(s) 78, 93, 227
AgsI TTSAA 1 cut(s) 12
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 2 cut(s) 55, 156
AluI AGCT 2 cut(s) 55, 156
AlwI GGATC 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 86
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 94
BfaI CTAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 203
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 37
Bpu1102I GCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 93, 227
Bse118I RCCGGY 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 3 cut(s) 78, 93, 227
BseMI GCAATG 1 cut(s) 124
BshFI GGCC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 23, 232
BslI CCNNNNNNNGG 3 cut(s) 78, 93, 227
BsnI GGCC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 86
Bsp143I GATC 1 cut(s) 210
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 2 cut(s) 44, 203
BspANI GGCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 231
BssMI GATC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 231
CviJI RGCY 4 cut(s) 7, 55, 156, 231
CviKI_1 RGCY 4 cut(s) 7, 55, 156, 231
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 229
EciI GGCGGA 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 92
FaiI YATR 1 cut(s) 65
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 203
HaeIII GGCC 1 cut(s) 231
HapII CCGG 2 cut(s) 23, 232
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 2 cut(s) 82, 89
HpaII CCGG 2 cut(s) 23, 232
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 108, 189
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 108, 189
HpyAV CCTTC 2 cut(s) 42, 117
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 3 cut(s) 36, 79, 106
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 16, 173
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 94
MseI TTAA 1 cut(s) 165
MspI CCGG 2 cut(s) 23, 232
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
NdeII GATC 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 16, 173
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 1 cut(s) 210
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 94
SetI ASST 7 cut(s) 18, 34, 57, 105, 158, 200, 223
SfaNI GCATC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 26
SsiI CCGC 2 cut(s) 44, 203
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 188
TasI AATT 1 cut(s) 26
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 2 cut(s) 16, 173
Tsp45I GTSAC 2 cut(s) 16, 173
TspDTI ATGAA 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.