Prupe.3G153300_v2.0.a1

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000217
Physical Location & Seq
Reverse (-)
16697447 .. 16698235
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G153300.1

Sequence Viewer

Length: 480 bp
ATGGCAGACTTACCAAAGTTTTTTGCTCTTAAATCAGCCAAGAACCAGAAATACGTGGTCTTCAAAGACCAATCCACCGCAGAGCTGCCAAATAGGCTCGAATGCTCCGGAGAGGAAAGTCACAGCAAATACGCAAGGTTCAAAGCGGAGAAGGACGTAAACCAACCCAGTCTGGTGCATATGAAATCCACCTACAGCGACAAATACCTGAGAACGGCAAGCGAAGACAGTCCGTGGATTGTGGCCGAGGCTGACGAGAAACAGCCAAATAAAAACCTGTGGTCATGTACACTCTTCAAGCCTGTTGTTTTGCAAAAACCGGCACCGTACGTCGACGGCGTATACCAGTTCGTCCACGTGCGATTGGGAAACCTTACAGAGCCAAAATCTGGAACCGACTTCGAGGATGATGCCCTCGCTGCCGCAAATGCAAAACCCACCAGTACCCCTGCCTTCACTGTCGAAAAACTTCCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

160

Amino Acids

17.77

Weight (kDa)

6.83

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 389
AccI GTMKAC 2 cut(s) 333, 342
AccIII TCCGGA 1 cut(s) 107
AciI CCGC 3 cut(s) 78, 146, 423
AcoI YGGCCR 1 cut(s) 243
AcvI CACGTG 1 cut(s) 358
AfaI GTAC 3 cut(s) 289, 329, 445
AfiI CCNNNNNNNGG 2 cut(s) 214, 389
AgsI TTSAA 3 cut(s) 64, 142, 298
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 85, 419
Asp700I GAANNNNTTC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 322
BbrPI CACGTG 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 52, 231
BbvI GCAGC 2 cut(s) 72, 406
BceAI ACGGC 2 cut(s) 231, 352
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 3 cut(s) 86, 420, 423
BlsI GCNGC 3 cut(s) 87, 421, 424
Bme1390I CCNGG 1 cut(s) 474
BmiI GGNNCC 2 cut(s) 324, 394
BmrFI CCNGG 1 cut(s) 474
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 400
BmuI ACTGGG 1 cut(s) 162
BpiI GAAGAC 2 cut(s) 52, 231
BsaAI YACGTR 2 cut(s) 55, 358
BsaJI CCNNGG 2 cut(s) 233, 246
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 389
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 3 cut(s) 168, 346, 441
BseAI TCCGGA 1 cut(s) 107
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 233, 246
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 214, 389
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 168, 346, 441
BseXI GCAGC 2 cut(s) 72, 406
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 322
BsiSI CCGG 2 cut(s) 108, 320
BsiWI CGTACG 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 214, 389
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 1 cut(s) 245
Bsp13I TCCGGA 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 287
BspACI CCGC 3 cut(s) 78, 146, 423
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 324, 394
BspT107I GGYRCC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 287
BsrI ACTGG 3 cut(s) 168, 346, 441
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 2 cut(s) 233, 246
BssNAI GTATAC 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 230, 327, 460
Bst6I CTCTTC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 287
BstBAI YACGTR 2 cut(s) 55, 358
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 209
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 1 cut(s) 412
BstMWI GCNNNNNNNGC 3 cut(s) 94, 419, 428
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 72, 406
BstV2I GAAGAC 2 cut(s) 52, 231
BstZ17I GTATAC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 319
Csp6I GTAC 3 cut(s) 288, 328, 444
CviAII CATG 1 cut(s) 285
CviJI RGCY 8 cut(s) 38, 85, 97, 245, 251, 265, 301, 382
CviKI_1 RGCY 8 cut(s) 38, 85, 97, 245, 251, 265, 301, 382
CviQI GTAC 3 cut(s) 288, 328, 444
DdeI CTNAG 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco72I CACGTG 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 472
FaeI CATG 1 cut(s) 288
FaiI YATR 4 cut(s) 180, 182, 286, 343
FatI CATG 1 cut(s) 284
FauNDI CATATG 1 cut(s) 180
FblI GTMKAC 2 cut(s) 333, 342
Fnu4HI GCNGC 3 cut(s) 86, 420, 423
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 3 cut(s) 86, 420, 423
GluI GCNGC 3 cut(s) 86, 420, 423
HaeIII GGCC 1 cut(s) 245
HapII CCGG 2 cut(s) 108, 320
Hin1II CATG 1 cut(s) 288
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HpaII CCGG 2 cut(s) 108, 320
Hpy166II GTNNAC 5 cut(s) 160, 290, 334, 343, 355
Hpy188III TCNNGA 2 cut(s) 108, 390
Hpy8I GTNNAC 5 cut(s) 160, 290, 334, 343, 355
Hpy99I CGWCG 2 cut(s) 335, 338
HpyAV CCTTC 2 cut(s) 145, 463
HpyCH4III ACNGT 3 cut(s) 230, 327, 460
HpyCH4IV ACGT 4 cut(s) 54, 156, 330, 357
HpyCH4V TGCA 3 cut(s) 178, 313, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 419, 428
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 4 cut(s) 54, 156, 330, 357
Hsp92II CATG 1 cut(s) 288
Kpn2I TCCGGA 1 cut(s) 107
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 2 cut(s) 72, 406
LweI GCATC 1 cut(s) 400
MaeII ACGT 4 cut(s) 54, 156, 330, 357
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 3 cut(s) 52, 236, 286
MnlI CCTC 4 cut(s) 106, 241, 397, 425
MroI TCCGGA 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 1 cut(s) 30
MspI CCGG 2 cut(s) 108, 320
MspR9I CCNGG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 3 cut(s) 94, 419, 428
NdeI CATATG 1 cut(s) 180
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 2 cut(s) 324, 394
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 468
Pfl23II CGTACG 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 3 cut(s) 87, 421, 424
PmaCI CACGTG 1 cut(s) 358
PmlI CACGTG 1 cut(s) 358
Ppu21I YACGTR 2 cut(s) 55, 358
Psp6I CCWGG 1 cut(s) 472
PspCI CACGTG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 472
PspLI CGTACG 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 324, 394
PsrI GAACNNNNNNTAC 2 cut(s) 35, 67
RsaI GTAC 3 cut(s) 289, 329, 445
RsaNI GTAC 3 cut(s) 288, 328, 444
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 3 cut(s) 86, 420, 423
ScrFI CCNGG 1 cut(s) 474
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 193
SgrDI CGTCGACG 1 cut(s) 332
SsiI CCGC 3 cut(s) 78, 146, 423
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 3 cut(s) 230, 327, 460
TaiI ACGT 4 cut(s) 57, 159, 333, 360
TaqI TCGA 4 cut(s) 99, 333, 402, 462
TatI WGTACW 1 cut(s) 287
TauI GCSGC 1 cut(s) 425
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 85, 419
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 463
Van91I CCANNNNNTGG 1 cut(s) 389
XmiI GTMKAC 2 cut(s) 333, 342
XmnI GAANNNNTTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.