Rh1AG151100

Agglutinin domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
28342766 .. 28352366
9601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG151100.1

Sequence Viewer

Length: 405 bp
ATGTCTATCAAGTCTGGCGGTGTTAAAACAACCATGCAAGCTAGTGTTCCGGTAATTGGAGATGACGAAAAGCTTGTAATTAGTTCAAGTGAGTTTACAAGTGGATCAACAATATTTAAGTGGGGAGAAGTTGAGACATGGGAAACTCCAGTGCAGAGCGTGTGTAGAGTTGACGTGCCGGCAATGACCAAGTTGAATGTGAGTCTTGTGGCGAATAAAGCTTCATTTGAAGTTCCATTTAACTATTCTCGCCGCGACACTCGTACCAACGGTCAAATAAGCAACGACAACGACATGGATGATGGCATTTACATTGGGTTCAATTTCTATAACTTCAAGTACAACAGCAAGCAAAAAAATCTGTTGAAAAAGAGTGGGAGCGTTTCTCAGTTCATCTATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

134

Amino Acids

15.02

Weight (kDa)

8.66

Isoelectric Point (pI)

27.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 255
AciI CCGC 2 cut(s) 18, 253
AclWI GGATC 1 cut(s) 112
AfaI GTAC 2 cut(s) 265, 341
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 6 cut(s) 87, 196, 230, 322, 337, 367
AjiI CACGTC 1 cut(s) 175
AluBI AGCT 3 cut(s) 41, 73, 221
AluI AGCT 3 cut(s) 41, 73, 221
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 112
BaeI ACNNNNGTAYC 2 cut(s) 247, 280
BccI CCATC 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 397
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 370, 402
BpmI CTGGAG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 189
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 50, 179
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 2 cut(s) 18, 253
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 255
BspPI GGATC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 178
BssMI GATC 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 39, 180, 350
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 397
BstUI CGCG 1 cut(s) 255
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 39, 180, 350
Cfr10I RCCGGY 1 cut(s) 178
Csp6I GTAC 2 cut(s) 264, 340
CviAII CATG 3 cut(s) 34, 138, 295
CviJI RGCY 3 cut(s) 41, 73, 221
CviKI_1 RGCY 3 cut(s) 41, 73, 221
CviQI GTAC 2 cut(s) 264, 340
DdeI CTNAG 1 cut(s) 387
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
FaeI CATG 3 cut(s) 37, 141, 298
FaiI YATR 5 cut(s) 35, 139, 296, 330, 399
FatI CATG 3 cut(s) 33, 137, 294
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 132
HapII CCGG 2 cut(s) 50, 179
Hin1II CATG 3 cut(s) 37, 141, 298
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 71, 219
HinfI GANTC 1 cut(s) 202
HpaII CCGG 2 cut(s) 50, 179
Hpy166II GTNNAC 2 cut(s) 96, 172
Hpy8I GTNNAC 2 cut(s) 96, 172
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 37, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 3 cut(s) 37, 141, 298
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 3 cut(s) 63, 162, 192
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MluCI AATT 3 cut(s) 54, 78, 322
MlyI GAGTC 1 cut(s) 211
MroNI GCCGGC 1 cut(s) 178
MseI TTAA 3 cut(s) 24, 117, 240
MspI CCGG 2 cut(s) 50, 179
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 218
NaeI GCCGGC 1 cut(s) 180
NdeII GATC 1 cut(s) 104
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 3 cut(s) 37, 141, 298
PdiI GCCGGC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
RsaI GTAC 2 cut(s) 265, 341
RsaNI GTAC 2 cut(s) 264, 340
SaqAI TTAA 3 cut(s) 24, 117, 240
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 1 cut(s) 104
SchI GAGTC 1 cut(s) 211
SetI ASST 5 cut(s) 43, 75, 177, 223, 404
SfcI CTRYAG 1 cut(s) 397
Sse9I AATT 3 cut(s) 54, 78, 322
SsiI CCGC 2 cut(s) 18, 253
SspI AATATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 177
TasI AATT 3 cut(s) 54, 78, 322
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 255
Tru1I TTAA 3 cut(s) 24, 117, 240
Tru9I TTAA 3 cut(s) 24, 117, 240
TscAI CASTG 1 cut(s) 156
TspDTI ATGAA 2 cut(s) 213, 382
TspRI CASTG 1 cut(s) 156
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.