FvH4_7g07071

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000217
Physical Location & Seq
Reverse (-)
7058763 .. 7059365
603 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07071.t1

Sequence Viewer

Length: 603 bp
ATGGGAAACCTTCAAATCTGCAAGAGATACACACTCGGTTCCATGGTCGGTTTCACTGCAAATGTCACCAACATGCCAATCTTTGCTCACTTGAGAATTGAAGAGATTGTCAAGTCAAGAATAGTCTATAACGTCAAGTATCGTCTCACGCAAGCAAGGACCTACGACTACCAAAATGAAGTTGAAATTGCTATAGCAGAGGCTGCGAATTTGACCCAAGAAACCACTAGGATGACATTGAAGATGCCATACAAAATGACTAAGAGCATGAGTTGGAATGATGCCAAAACAATGTCTATGAAGTCTGGAGGCGTTAAAACAACCATGCAAGCCGGTGTTCCGGTATTTGGAGACGATGAAAAACTTGTAACTAGTTTAAGTGAGTTTACGAGCAGATCAACAATAATTAAGTGGGGAGAAGTTGAGACTTGGGAAATTGCAGTGCAAAGTGTGTGCAAAGTTGACGTGCCGGCAATGACTAAAGTGAATGTGAGACTTGTGGCAAATAAAGTTTCTTACGAGGTTCCATTCAACTATTCTCGCCGTGACACTCGTACCAATGGTCAAATAAGCAATGACAACGACATGGATGATGGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

201

Amino Acids

22.64

Weight (kDa)

8.78

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 5 cut(s) 14, 101, 185, 241, 532
AhlI ACTAGT 1 cut(s) 371
AjiI CACGTC 1 cut(s) 466
Alw26I GTCTC 4 cut(s) 149, 345, 419, 487
AlwNI CAGNNNCTG 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 159
BaeI ACNNNNGTAYC 2 cut(s) 538, 571
BarI GAAGNNNNNNTAC 2 cut(s) 233, 265
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 528
BcoDI GTCTC 4 cut(s) 149, 345, 419, 487
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 2 cut(s) 228, 372
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 159
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 40, 525
BmsI GCATC 2 cut(s) 234, 271
BpmI CTGGAG 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 2 cut(s) 332, 469
Bse3DI GCAATG 2 cut(s) 480, 580
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 237, 595
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 2 cut(s) 480, 580
BseXI GCAGC 1 cut(s) 190
BsiSI CCGG 3 cut(s) 333, 341, 470
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 4 cut(s) 149, 345, 419, 487
BsmBI CGTCTC 2 cut(s) 149, 345
Bsp143I GATC 1 cut(s) 395
Bsp19I CCATGG 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 40, 525
BsrDI GCAATG 2 cut(s) 480, 580
BsrFI RCCGGY 2 cut(s) 332, 469
BssAI RCCGGY 2 cut(s) 332, 469
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 3 cut(s) 153, 330, 471
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 237, 595
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 4 cut(s) 149, 345, 419, 487
BstMBI GATC 1 cut(s) 395
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 2 cut(s) 237, 595
BtsI GCAGTG 2 cut(s) 54, 447
BtsIMutI CAGTG 2 cut(s) 54, 447
Cac8I GCNNGC 3 cut(s) 153, 330, 471
CaiI CAGNNNCTG 1 cut(s) 203
Cfr10I RCCGGY 2 cut(s) 332, 469
Cfr13I GGNCC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 555
CviAII CATG 5 cut(s) 43, 73, 268, 325, 586
CviJI RGCY 2 cut(s) 203, 332
CviKI_1 RGCY 2 cut(s) 203, 332
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 1 cut(s) 261
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
Esp3I CGTCTC 2 cut(s) 149, 345
FaeI CATG 5 cut(s) 46, 76, 271, 328, 589
FaiI YATR 9 cut(s) 44, 74, 129, 194, 250, 269, 299, 326, 587
FatI CATG 5 cut(s) 42, 72, 267, 324, 585
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 228, 372
GluI GCNGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 327
HapII CCGG 3 cut(s) 333, 341, 470
Hin1II CATG 5 cut(s) 46, 76, 271, 328, 589
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HpaII CCGG 3 cut(s) 333, 341, 470
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 387, 463
Hpy188III TCNNGA 2 cut(s) 117, 306
Hpy8I GTNNAC 2 cut(s) 387, 463
HpyAV CCTTC 1 cut(s) 20
HpyCH4IV ACGT 2 cut(s) 132, 465
HpyCH4V TGCA 6 cut(s) 21, 59, 328, 440, 445, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 2 cut(s) 132, 465
Hsp92II CATG 5 cut(s) 46, 76, 271, 328, 589
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
Kzo9I GATC 1 cut(s) 395
LpnPI CCDG 4 cut(s) 291, 346, 354, 483
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 234, 271
MaeI CTAG 2 cut(s) 228, 372
MaeII ACGT 2 cut(s) 132, 465
MaeIII GTNAC 3 cut(s) 64, 367, 545
MalI GATC 1 cut(s) 397
MboI GATC 1 cut(s) 395
MboII GAAGA 2 cut(s) 113, 253
MluCI AATT 5 cut(s) 96, 186, 208, 405, 435
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 3 cut(s) 193, 302, 514
MroNI GCCGGC 1 cut(s) 469
MseI TTAA 4 cut(s) 315, 377, 408, 601
MslI CAYNNNNRTG 2 cut(s) 71, 230
MspI CCGG 3 cut(s) 333, 341, 470
MwoI GCNNNNNNNGC 1 cut(s) 203
NaeI GCCGGC 1 cut(s) 471
NcoI CCATGG 1 cut(s) 42
NdeII GATC 1 cut(s) 395
NgoMIV GCCGGC 1 cut(s) 469
NlaIII CATG 5 cut(s) 46, 76, 271, 328, 589
NlaIV GGNNCC 2 cut(s) 40, 525
NmuCI GTSAC 2 cut(s) 64, 545
NspI RCATGY 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 471
PkrI GCNGC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 40, 525
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 2 cut(s) 71, 230
SaqAI TTAA 4 cut(s) 315, 377, 408, 601
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 395
Sau96I GGNCC 1 cut(s) 159
SetI ASST 5 cut(s) 12, 135, 164, 468, 525
SfaNI GCATC 2 cut(s) 234, 271
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 71, 230
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 5 cut(s) 96, 186, 208, 405, 435
SspMI CTAG 2 cut(s) 228, 372
StyI CCWWGG 1 cut(s) 42
TaiI ACGT 2 cut(s) 135, 468
TasI AATT 5 cut(s) 96, 186, 208, 405, 435
Tru1I TTAA 4 cut(s) 315, 377, 408, 601
Tru9I TTAA 4 cut(s) 315, 377, 408, 601
TscAI CASTG 2 cut(s) 61, 447
TseFI GTSAC 2 cut(s) 64, 545
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 2 cut(s) 64, 545
TspDTI ATGAA 3 cut(s) 192, 314, 372
TspRI CASTG 2 cut(s) 61, 447
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 76
XspI CTAG 2 cut(s) 228, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.