RchiOBHm_Chr5g0011831

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000217
Physical Location & Seq
Forward (+)
7875826 .. 7877068
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29244

Sequence Viewer

Length: 1191 bp
ATGGGACTAGTCCATATAAGGTGCTCCCAGAATAGAAAGTTCCTGCGAACGAGAATTGAGGGTGATGTGTACCTTTCTCCGGAGGCTGATGAACCAGAGGAGGACCAATCCAAATGGTCGTGCACACTATTTGAGCCTCAAGCAGCTGTAGATGGCAACCCCGACAAAGCCCGGTTGTTCCATGTCCAAGCAAAGCGATATGCAACGGTATTGGACGATGGTGGAGTAAGGTTCTTCAAATTAGATGACGGTCAGAGTGATCAGGGTATCTTCGATATCACTGACTGGCAGTCATTGGTGATATTGCCAAAGCATGTGGCCTTCAAAGCCAACAACAACCTTTACCTTCAGCTTGGGGAAAGTAATCAGCTCAGGTTCGTGTCCACCGATAAGGGGATTCCTGCTTCGTGGTTCGAAGTGTCCACAGATGGCGATGGAATGGTGAAAATCAAATGCTACAAGAACAATTCCTACCTGAGGTTCGGCGGCAGTGACTACAGCAACTGGATTTTTGCTGACGGAGGCAGCGCATCGAAACCTCCCACCTTGTTTTTGCCAATCAAGGTCGACACTAGTGCGGCCGCTCTCAAATGCTTGGGCAACGACAAATTTTGCGCCCTACACACCTATGAGTATGATTATACAGACGGTCTGAACGCGCCTGACACTAGTACAAGCATTTCAAACTTGTCACGCTGGGGGCTGGAAGAGCTTGTTCTCTCTAGGAGAATCTATAATGCCGACTTTGACCTTAAGAATGCCATAATCTACGGCGAGACCCCGGTCACCATGGCCACCGCAAACGCGAGCAACAATACCTCAGCAGAAAACACTGTGGAATTCAAGTTTGCATACAAGGATGGTAAGAGCAGCACGTGGAAGGCCAGCCACTCGTGGATGATAGGCATGAGTGTCTCTGCCAGCTTCAAAATTCCATTCATCGGCGGTACTGACGTCACTGCTCAAGCAGAGTATTCCGGATCCTATGAGTGGGGAGAGACCATTACATCTGAAAACACATTGGAGACCACCTACAAGGCTACAGTGCCGGCAAACACTTCTATAACTGTGAGCCTGATGGCGACCAAGGGAAGTTGTGACGTGCCTTACTCGATGATGGGGTGTACACGGGTGTCAATTCATACAATTTCCGCTACGAGACTACAGCACGGAAAGAGCCGGTATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

396

Amino Acids

43.84

Weight (kDa)

5.59

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 2 - 80 1.4e-08 Agglutinin domain
Aerolysin PF01117 252 - 372 2.3e-09 Aerolysin toxin
ETX_MTX2 PF03318 259 - 374 1.5e-09 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 957
AccBSI CCGCTC 1 cut(s) 584
AccI GTMKAC 1 cut(s) 567
AccII CGCG 2 cut(s) 659, 806
AccIII TCCGGA 2 cut(s) 79, 977
AciI CCGC 6 cut(s) 486, 578, 582, 798, 945, 1152
AclWI GGATC 2 cut(s) 975, 988
AcoI YGGCCR 2 cut(s) 579, 792
AcsI RAATTY 3 cut(s) 608, 839, 930
AcuI CTGAAG 1 cut(s) 332
AcvI CACGTG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 954
AfaI GTAC 4 cut(s) 71, 673, 949, 1126
AfiI CCNNNNNNNGG 5 cut(s) 79, 393, 477, 941, 990
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 5 cut(s) 238, 325, 684, 844, 928
AhdI GACNNNNNGTC 1 cut(s) 289
AhlI ACTAGT 3 cut(s) 7, 572, 668
AjiI CACGTC 1 cut(s) 1102
AluBI AGCT 5 cut(s) 146, 352, 370, 712, 924
AluI AGCT 5 cut(s) 146, 352, 370, 712, 924
Alw21I GWGCWC 2 cut(s) 26, 125
Alw26I GTCTC 5 cut(s) 770, 919, 992, 1019, 1153
Alw44I GTGCAC 1 cut(s) 121
AlwI GGATC 2 cut(s) 975, 988
AlwNI CAGNNNCTG 1 cut(s) 504
Aor13HI TCCGGA 2 cut(s) 79, 977
AoxI GGCC 4 cut(s) 318, 579, 792, 882
ApaLI GTGCAC 1 cut(s) 121
ApeKI GCWGC 3 cut(s) 143, 525, 870
ApoI RAATTY 3 cut(s) 608, 839, 930
AspLEI GCGC 3 cut(s) 530, 617, 661
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 2 cut(s) 172, 782
AsuHPI GGTGA 4 cut(s) 74, 310, 454, 778
AsuII TTCGAA 1 cut(s) 414
AvaII GGWCC 1 cut(s) 103
AxyI CCTNAGG 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 939, 972
BalI TGGCCA 1 cut(s) 794
BamHI GGATCC 1 cut(s) 980
BauI CACGAG 1 cut(s) 892
BbrPI CACGTG 1 cut(s) 876
Bbv12I GWGCWC 2 cut(s) 26, 125
BbvCI CCTCAGC 1 cut(s) 820
BbvI GCAGC 3 cut(s) 155, 537, 882
BccI CCATC 7 cut(s) 146, 212, 422, 428, 854, 1072, 1111
BceAI ACGGC 1 cut(s) 787
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 2 cut(s) 172, 782
BcoDI GTCTC 5 cut(s) 770, 919, 992, 1019, 1153
BcuI ACTAGT 3 cut(s) 7, 572, 668
BfaI CTAG 4 cut(s) 8, 573, 669, 723
BfmI CTRYAG 5 cut(s) 147, 496, 1041, 1163, 1187
BfrI CTTAAG 1 cut(s) 752
BisI GCNGC 6 cut(s) 144, 487, 526, 579, 582, 871
BlsI GCNGC 6 cut(s) 145, 488, 527, 580, 583, 872
Bme1390I CCNGG 2 cut(s) 172, 782
Bme18I GGWCC 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 289
BmgBI CACGTC 1 cut(s) 1102
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 982
BmrFI CCNGG 2 cut(s) 172, 782
BmsI GCATC 1 cut(s) 539
BoxI GACNNNNGTC 1 cut(s) 782
Bpu10I CCTNAGC 2 cut(s) 371, 820
Bpu14I TTCGAA 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 123, 948
BpuMI CCSGG 2 cut(s) 172, 782
BsaAI YACGTR 1 cut(s) 876
BsaHI GRCGYC 1 cut(s) 954
BsaI GGTCTC 3 cut(s) 770, 992, 1019
BsaJI CCNNGG 3 cut(s) 780, 789, 1086
BsaWI WCCGGW 2 cut(s) 79, 977
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 393, 477, 941, 990
Bse118I RCCGGY 2 cut(s) 1048, 1179
Bse1I ACTGG 2 cut(s) 290, 509
Bse21I CCTNAGG 1 cut(s) 476
BseAI TCCGGA 2 cut(s) 79, 977
BseDI CCNNGG 3 cut(s) 780, 789, 1086
BseGI GGATG 2 cut(s) 865, 903
BseLI CCNNNNNNNGG 5 cut(s) 79, 393, 477, 941, 990
BseMII CTCAG 3 cut(s) 385, 467, 834
BseNI ACTGG 2 cut(s) 290, 509
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 125
BseX3I CGGCCG 1 cut(s) 579
BseXI GCAGC 3 cut(s) 155, 537, 882
BseYI CCCAGC 1 cut(s) 696
Bsh1236I CGCG 2 cut(s) 659, 806
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 4 cut(s) 320, 581, 794, 884
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 2 cut(s) 26, 125
BsiSI CCGG 6 cut(s) 80, 172, 782, 978, 1049, 1180
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 5 cut(s) 79, 393, 477, 941, 990
BsmAI GTCTC 5 cut(s) 770, 919, 992, 1019, 1153
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 4 cut(s) 320, 581, 794, 884
Bso31I GGTCTC 3 cut(s) 770, 992, 1019
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 26, 125
Bsp13I TCCGGA 2 cut(s) 79, 977
Bsp1407I TGTACA 1 cut(s) 1124
Bsp143I GATC 2 cut(s) 259, 980
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 6 cut(s) 486, 578, 582, 798, 945, 1152
BspANI GGCC 4 cut(s) 320, 581, 794, 884
BspCNI CTCAG 3 cut(s) 384, 468, 833
BspEI TCCGGA 2 cut(s) 79, 977
BspFNI CGCG 2 cut(s) 659, 806
BspLI GGNNCC 1 cut(s) 982
BspPI GGATC 2 cut(s) 975, 988
BspQI GCTCTTC 1 cut(s) 702
BspT104I TTCGAA 1 cut(s) 414
BspTI CTTAAG 1 cut(s) 752
BspTNI GGTCTC 3 cut(s) 770, 992, 1019
BsrBI CCGCTC 1 cut(s) 584
BsrFI RCCGGY 2 cut(s) 1048, 1179
BsrGI TGTACA 1 cut(s) 1124
BsrI ACTGG 2 cut(s) 290, 509
BssAI RCCGGY 2 cut(s) 1048, 1179
BssECI CCNNGG 3 cut(s) 780, 789, 1086
BssMI GATC 2 cut(s) 259, 980
BssNI GRCGYC 1 cut(s) 954
BssSI CACGAG 1 cut(s) 892
BssT1I CCWWGG 2 cut(s) 789, 1086
Bst2BI CACGAG 1 cut(s) 892
Bst4CI ACNGT 6 cut(s) 208, 251, 650, 835, 1045, 1069
Bst6I CTCTTC 1 cut(s) 702
BstACI GRCGYC 1 cut(s) 954
BstAFI CTTAAG 1 cut(s) 752
BstAUI TGTACA 1 cut(s) 1124
BstBAI YACGTR 1 cut(s) 876
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 4 cut(s) 808, 886, 922, 1050
BstDEI CTNAG 3 cut(s) 371, 476, 820
BstDSI CCRYGG 1 cut(s) 789
BstEII GGTNACC 1 cut(s) 784
BstENI CCTNNNNNAGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 865, 903
BstFNI CGCG 2 cut(s) 659, 806
BstHHI GCGC 3 cut(s) 530, 617, 661
BstKTI GATC 2 cut(s) 262, 983
BstMAI GTCTC 5 cut(s) 770, 919, 992, 1019, 1153
BstMBI GATC 2 cut(s) 259, 980
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 2 cut(s) 326, 709
BstNSI RCATGY 1 cut(s) 317
BstPAI GACNNNNGTC 1 cut(s) 782
BstPI GGTNACC 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 170, 780
BstSFI CTRYAG 5 cut(s) 147, 496, 1041, 1163, 1187
BstSLI GKGCMC 1 cut(s) 125
BstUI CGCG 2 cut(s) 659, 806
BstV1I GCAGC 3 cut(s) 155, 537, 882
BstX2I RGATCY 1 cut(s) 980
BstYI RGATCY 1 cut(s) 980
BstZI CGGCCG 1 cut(s) 579
Bsu36I CCTNAGG 1 cut(s) 476
BsuRI GGCC 4 cut(s) 320, 581, 794, 884
BtgI CCRYGG 1 cut(s) 789
BtgZI GCGATG 1 cut(s) 447
BtrI CACGTC 1 cut(s) 1102
BtsCI GGATG 2 cut(s) 865, 903
BtsI GCAGTG 2 cut(s) 496, 957
BtsIMutI CAGTG 5 cut(s) 279, 496, 831, 957, 1050
Cac8I GCNNGC 4 cut(s) 808, 886, 922, 1050
CaiI CAGNNNCTG 1 cut(s) 504
CciNI GCGGCCGC 1 cut(s) 579
CfoI GCGC 3 cut(s) 530, 617, 661
Cfr10I RCCGGY 2 cut(s) 1048, 1179
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 4 cut(s) 70, 672, 948, 1125
CspCI CAANNNNNGTGG 2 cut(s) 297, 332
CviAII CATG 4 cut(s) 182, 314, 790, 907
CviQI GTAC 4 cut(s) 70, 672, 948, 1125
DdeI CTNAG 3 cut(s) 371, 476, 820
DpnI GATC 2 cut(s) 261, 982
DpnII GATC 2 cut(s) 259, 980
DriI GACNNNNNGTC 1 cut(s) 289
EaeI YGGCCR 2 cut(s) 579, 792
EagI CGGCCG 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 702
Eam1105I GACNNNNNGTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 702
EclXI CGGCCG 1 cut(s) 579
Eco130I CCWWGG 2 cut(s) 789, 1086
Eco31I GGTCTC 3 cut(s) 770, 992, 1019
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 332
Eco72I CACGTG 1 cut(s) 876
Eco81I CCTNAGG 1 cut(s) 476
Eco91I GGTNACC 1 cut(s) 784
EcoNI CCTNNNNNAGG 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 839
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 789, 1086
ErhI CCWWGG 2 cut(s) 789, 1086
FaeI CATG 4 cut(s) 185, 317, 793, 910
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 181, 313, 789, 906
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 6 cut(s) 144, 487, 526, 579, 582, 871
FokI GGATG 2 cut(s) 872, 910
Fsp4HI GCNGC 6 cut(s) 144, 487, 526, 579, 582, 871
FspBI CTAG 4 cut(s) 8, 573, 669, 723
GlaI GCGC 3 cut(s) 529, 616, 660
GluI GCNGC 6 cut(s) 144, 487, 526, 579, 582, 871
GsaI CCCAGC 1 cut(s) 700
HaeIII GGCC 4 cut(s) 320, 581, 794, 884
HapII CCGG 6 cut(s) 80, 172, 782, 978, 1049, 1180
HhaI GCGC 3 cut(s) 530, 617, 661
Hin1I GRCGYC 1 cut(s) 954
Hin1II CATG 4 cut(s) 185, 317, 793, 910
Hin6I GCGC 3 cut(s) 528, 615, 659
HinP1I GCGC 3 cut(s) 528, 615, 659
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 2 cut(s) 397, 729
HpaII CCGG 6 cut(s) 80, 172, 782, 978, 1049, 1180
HphI GGTGA 4 cut(s) 74, 310, 454, 778
Hpy166II GTNNAC 7 cut(s) 70, 123, 384, 423, 568, 1125, 1127
Hpy188I TCNGA 3 cut(s) 255, 654, 1012
Hpy188III TCNNGA 2 cut(s) 80, 978
Hpy8I GTNNAC 7 cut(s) 70, 123, 384, 423, 568, 1125, 1127
HpyAV CCTTC 3 cut(s) 331, 356, 874
HpyCH4III ACNGT 6 cut(s) 208, 251, 650, 835, 1045, 1069
HpyCH4IV ACGT 3 cut(s) 875, 954, 1101
HpyCH4V TGCA 3 cut(s) 123, 203, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 709
HpyF3I CTNAG 3 cut(s) 371, 476, 820
HpySE526I ACGT 3 cut(s) 875, 954, 1101
Hsp92I GRCGYC 1 cut(s) 954
Hsp92II CATG 4 cut(s) 185, 317, 793, 910
HspAI GCGC 3 cut(s) 528, 615, 659
Kpn2I TCCGGA 2 cut(s) 79, 977
KroI GCCGGC 1 cut(s) 1048
KroNI GCCGGC 1 cut(s) 1050
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 980
LguI GCTCTTC 1 cut(s) 702
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 3 cut(s) 155, 537, 882
LweI GCATC 1 cut(s) 539
MaeI CTAG 4 cut(s) 8, 573, 669, 723
MaeII ACGT 3 cut(s) 875, 954, 1101
MaeIII GTNAC 5 cut(s) 491, 690, 784, 955, 1097
MalI GATC 2 cut(s) 261, 982
MbiI CCGCTC 1 cut(s) 584
MboI GATC 2 cut(s) 259, 980
MboII GAAGA 3 cut(s) 226, 262, 719
MflI RGATCY 1 cut(s) 980
MhlI GDGCHC 2 cut(s) 26, 125
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 8 cut(s) 54, 239, 466, 608, 839, 930, 1137, 1146
MluNI TGGCCA 1 cut(s) 794
MnlI CCTC 9 cut(s) 52, 76, 91, 94, 147, 471, 515, 549, 829
Mox20I TGGCCA 1 cut(s) 794
MroI TCCGGA 2 cut(s) 79, 977
MroNI GCCGGC 1 cut(s) 1048
MscI TGGCCA 1 cut(s) 794
MseI TTAA 1 cut(s) 753
MslI CAYNNNNRTG 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 6 cut(s) 80, 172, 782, 978, 1049, 1180
MspR9I CCNGG 2 cut(s) 172, 782
Mva1269I GAATGC 1 cut(s) 763
MvnI CGCG 2 cut(s) 659, 806
MwoI GCNNNNNNNGC 2 cut(s) 326, 709
NaeI GCCGGC 1 cut(s) 1050
NciI CCSGG 2 cut(s) 172, 782
NcoI CCATGG 1 cut(s) 789
NdeII GATC 2 cut(s) 259, 980
NgoMIV GCCGGC 1 cut(s) 1048
NlaIII CATG 4 cut(s) 185, 317, 793, 910
NlaIV GGNNCC 1 cut(s) 982
NmuCI GTSAC 5 cut(s) 491, 690, 784, 955, 1097
NotI GCGGCCGC 1 cut(s) 579
NspI RCATGY 1 cut(s) 317
NspV TTCGAA 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 702
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 1 cut(s) 763
PdiI GCCGGC 1 cut(s) 1050
PfeI GAWTC 2 cut(s) 397, 729
PkrI GCNGC 6 cut(s) 145, 488, 527, 580, 583, 872
PmaCI CACGTG 1 cut(s) 876
PmlI CACGTG 1 cut(s) 876
Ppu21I YACGTR 1 cut(s) 876
PshAI GACNNNNGTC 1 cut(s) 782
PspCI CACGTG 1 cut(s) 876
PspEI GGTNACC 1 cut(s) 784
PspFI CCCAGC 1 cut(s) 696
PspN4I GGNNCC 1 cut(s) 982
PspPI GGNCC 1 cut(s) 103
PsrI GAACNNNNNNTAC 2 cut(s) 455, 487
PstNI CAGNNNCTG 1 cut(s) 504
PsuI RGATCY 1 cut(s) 980
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 4 cut(s) 71, 673, 949, 1126
RsaNI GTAC 4 cut(s) 70, 672, 948, 1125
RseI CAYNNNNRTG 1 cut(s) 627
SalI GTCGAC 1 cut(s) 566
SapI GCTCTTC 1 cut(s) 702
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 6 cut(s) 144, 487, 526, 579, 582, 871
Sau3AI GATC 2 cut(s) 259, 980
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 172, 782
SduI GDGCHC 2 cut(s) 26, 125
SfaNI GCATC 1 cut(s) 539
SfcI CTRYAG 5 cut(s) 147, 496, 1041, 1163, 1187
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 3 cut(s) 138, 752, 963
SmoI CTYRAG 3 cut(s) 138, 752, 963
SpeI ACTAGT 3 cut(s) 7, 572, 668
Sse9I AATT 8 cut(s) 54, 239, 466, 608, 839, 930, 1137, 1146
SsiI CCGC 6 cut(s) 486, 578, 582, 798, 945, 1152
SspMI CTAG 4 cut(s) 8, 573, 669, 723
StyD4I CCNGG 2 cut(s) 170, 780
StyI CCWWGG 2 cut(s) 789, 1086
TaaI ACNGT 6 cut(s) 208, 251, 650, 835, 1045, 1069
TaiI ACGT 3 cut(s) 878, 957, 1104
TaqI TCGA 5 cut(s) 273, 414, 533, 567, 1112
TasI AATT 8 cut(s) 54, 239, 466, 608, 839, 930, 1137, 1146
TatI WGTACW 2 cut(s) 671, 1124
TauI GCSGC 3 cut(s) 489, 581, 584
TfiI GAWTC 2 cut(s) 397, 729
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 5 cut(s) 286, 496, 838, 964, 1050
TseFI GTSAC 5 cut(s) 491, 690, 784, 955, 1097
TseI GCWGC 3 cut(s) 143, 525, 870
Tsp45I GTSAC 5 cut(s) 491, 690, 784, 955, 1097
TspDTI ATGAA 3 cut(s) 105, 928, 1130
TspGWI ACGGA 2 cut(s) 534, 1185
TspRI CASTG 5 cut(s) 286, 496, 838, 964, 1050
Vha464I CTTAAG 1 cut(s) 752
VneI GTGCAC 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 475
XapI RAATTY 3 cut(s) 608, 839, 930
XceI RCATGY 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 567
XspI CTAG 4 cut(s) 8, 573, 669, 723
ZraI GACGTC 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.