Rmu_sc0016133.1_g000003

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016133.1
OG0000217
Physical Location & Seq
Forward (+)
10090 .. 10836
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016133.1_g000003.1.cds

Sequence Viewer

Length: 747 bp
ctgagtttagatgaaggttttcaagatcagcatcatggtagagatgaatcaaacatccctgaggaacaccaagcaaatgaattagtgaatcacgatgatgacgaggagatcaacaacaacgacgaagaagataataataataataataatcgtcgtactcgtgctcatcctcgtcctcaacgaaatgaaatggataggaagagaatattagtccgtcttcgccatgtccaactcggacactacgtaggcttgcggagggacaatgtcgacgcacaacacttcatgggaggcttatccacttcacctgacaatgataccaacaacggtatggatgagaataatgttagtactaatgaacaaactaaccgtacaagtgagaatagcaacagtgcggatgatcagactaaccgtacaggcgagaataataacaatacaaatgatcaaactaactgtacaaatgatatagcaccgtgtgacgtgttcactgtcattaattgggaatcattggtgatatttcccaaacatatggcattcaggggagataatagagtcttcctcagcactgatagtcgcagctggtatgaaggtcacatgtgtttggagtaccgagccgatgactttagagatgcaatggcagcgcatgagatttttactaatccagacggaatcatccgcataaaatccgattatttgggcaagttttggtgtcgtaggccgggtgaccctaactgggtcgttcctgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

248

Amino Acids

28.75

Weight (kDa)

4.84

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AciI CCGC 3 cut(s) 253, 392, 673
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 6 cut(s) 157, 349, 370, 412, 454, 605
AfiI CCNNNNNNNGG 1 cut(s) 730
AflIII ACRYGT 2 cut(s) 477, 591
AgsI TTSAA 1 cut(s) 23
AjiI CACGTC 1 cut(s) 478
AluBI AGCT 1 cut(s) 576
AluI AGCT 1 cut(s) 576
Alw21I GWGCWC 1 cut(s) 166
AoxI GGCC 1 cut(s) 713
ApeKI GCWGC 2 cut(s) 573, 635
AseI ATTAAT 1 cut(s) 492
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 640
AsuC2I CCSGG 1 cut(s) 717
AsuHPI GGTGA 3 cut(s) 294, 520, 731
AxyI CCTNAGG 1 cut(s) 60
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 209, 544
Bbv12I GWGCWC 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 557
BbvI GCAGC 2 cut(s) 585, 647
BclI TGATCA 2 cut(s) 397, 439
BcnI CCSGG 1 cut(s) 717
BisI GCNGC 2 cut(s) 574, 636
BlsI GCNGC 2 cut(s) 575, 637
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 717
BmgBI CACGTC 1 cut(s) 478
BmrFI CCNGG 1 cut(s) 717
BmrI ACTGGG 1 cut(s) 739
BmsI GCATC 2 cut(s) 40, 616
BmuI ACTGGG 1 cut(s) 739
BpiI GAAGAC 2 cut(s) 209, 544
BplI GAGNNNNNCTC 2 cut(s) 540, 572
Bpu10I CCTNAGC 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 717
BsaAI YACGTR 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 734
Bse21I CCTNAGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 30
BseGI GGATG 5 cut(s) 54, 166, 337, 400, 669
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 2 cut(s) 51, 571
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 585, 647
BshFI GGCC 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 716
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 730
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 530
BsnI GGCC 1 cut(s) 715
Bsp1286I GDGCHC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 452
Bsp143I GATC 4 cut(s) 25, 108, 397, 439
BspACI CCGC 3 cut(s) 253, 392, 673
BspANI GGCC 1 cut(s) 715
BspCNI CTCAG 2 cut(s) 52, 570
BsrDI GCAATG 1 cut(s) 636
BsrGI TGTACA 1 cut(s) 452
BsrI ACTGG 1 cut(s) 734
BssMI GATC 4 cut(s) 25, 108, 397, 439
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 7 cut(s) 326, 368, 389, 410, 452, 471, 487
Bst6I CTCTTC 1 cut(s) 194
BstAUI TGTACA 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 2, 60, 557
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 5 cut(s) 54, 166, 337, 400, 669
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 4 cut(s) 28, 111, 400, 442
BstMBI GATC 4 cut(s) 25, 108, 397, 439
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 595
BstPI GGTNACC 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 715
BstSNI TACGTA 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 585, 647
BstV2I GAAGAC 2 cut(s) 209, 544
BstXI CCANNNNNNTGG 1 cut(s) 526
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 715
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 5 cut(s) 54, 166, 337, 400, 669
BtsIMutI CAGTG 3 cut(s) 394, 483, 561
Cac8I GCNNGC 1 cut(s) 251
CfoI GCGC 1 cut(s) 640
CseI GACGC 1 cut(s) 278
Csp6I GTAC 6 cut(s) 156, 348, 369, 411, 453, 604
CviAII CATG 5 cut(s) 35, 224, 283, 592, 641
CviJI RGCY 5 cut(s) 249, 291, 576, 611, 715
CviKI_1 RGCY 5 cut(s) 249, 291, 576, 611, 715
CviQI GTAC 6 cut(s) 156, 348, 369, 411, 453, 604
DdeI CTNAG 3 cut(s) 2, 60, 557
DpnI GATC 4 cut(s) 27, 110, 399, 441
DpnII GATC 4 cut(s) 25, 108, 397, 439
DraIII CACNNNGTG 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco105I TACGTA 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 719
EcoO65I GGTNACC 1 cut(s) 719
FaeI CATG 5 cut(s) 38, 227, 286, 595, 644
FaqI GGGAC 1 cut(s) 272
FatI CATG 5 cut(s) 34, 223, 282, 591, 640
FauNDI CATATG 1 cut(s) 525
FbaI TGATCA 2 cut(s) 397, 439
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 574, 636
FokI GGATG 5 cut(s) 41, 153, 344, 407, 656
Fsp4HI GCNGC 2 cut(s) 574, 636
GlaI GCGC 1 cut(s) 639
GluI GCNGC 2 cut(s) 574, 636
HaeIII GGCC 1 cut(s) 715
HapII CCGG 1 cut(s) 716
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 640
Hin1II CATG 5 cut(s) 38, 227, 286, 595, 644
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 5 cut(s) 47, 88, 500, 549, 666
HpaII CCGG 1 cut(s) 716
HphI GGTGA 3 cut(s) 294, 520, 731
Hpy166II GTNNAC 2 cut(s) 268, 483
Hpy188I TCNGA 3 cut(s) 236, 402, 685
Hpy188III TCNNGA 4 cut(s) 23, 92, 659, 740
Hpy8I GTNNAC 2 cut(s) 268, 483
Hpy99I CGWCG 3 cut(s) 125, 156, 272
HpyAV CCTTC 2 cut(s) 8, 578
HpyCH4III ACNGT 7 cut(s) 326, 368, 389, 410, 452, 471, 487
HpyCH4IV ACGT 2 cut(s) 243, 477
HpyCH4V TGCA 1 cut(s) 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpyF3I CTNAG 3 cut(s) 2, 60, 557
HpySE526I ACGT 2 cut(s) 243, 477
Hsp92II CATG 5 cut(s) 38, 227, 286, 595, 644
HspAI GCGC 1 cut(s) 638
Ksp22I TGATCA 2 cut(s) 397, 439
Kzo9I GATC 4 cut(s) 25, 108, 397, 439
LpnPI CCDG 8 cut(s) 72, 318, 399, 520, 562, 672, 715, 729
Lsp1109I GCAGC 2 cut(s) 585, 647
LweI GCATC 2 cut(s) 40, 616
MaeII ACGT 2 cut(s) 243, 477
MaeIII GTNAC 3 cut(s) 473, 587, 719
MalI GATC 4 cut(s) 27, 110, 399, 441
MboI GATC 4 cut(s) 25, 108, 397, 439
MboII GAAGA 5 cut(s) 137, 140, 209, 211, 544
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 2 cut(s) 80, 493
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 7 cut(s) 55, 97, 180, 186, 249, 281, 566
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 492
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 576
MspI CCGG 1 cut(s) 716
MspR9I CCNGG 1 cut(s) 717
Mva1269I GAATGC 1 cut(s) 530
MwoI GCNNNNNNNGC 1 cut(s) 635
NciI CCSGG 1 cut(s) 717
NdeI CATATG 1 cut(s) 525
NdeII GATC 4 cut(s) 25, 108, 397, 439
NlaIII CATG 5 cut(s) 38, 227, 286, 595, 644
NmuCI GTSAC 3 cut(s) 473, 587, 719
NspI RCATGY 1 cut(s) 595
PciI ACATGT 1 cut(s) 591
PcsI WCGNNNNNNNCGW 4 cut(s) 99, 157, 178, 240
PctI GAATGC 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 4 cut(s) 47, 88, 500, 666
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 575, 637
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Ppu21I YACGTR 1 cut(s) 244
PscI ACATGT 1 cut(s) 591
PshBI ATTAAT 1 cut(s) 492
PspEI GGTNACC 1 cut(s) 719
PsyI GACNNNGTC 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 576
RsaI GTAC 6 cut(s) 157, 349, 370, 412, 454, 605
RsaNI GTAC 6 cut(s) 156, 348, 369, 411, 453, 604
RseI CAYNNNNRTG 1 cut(s) 96
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 2 cut(s) 574, 636
Sau3AI GATC 4 cut(s) 25, 108, 397, 439
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 1 cut(s) 717
SduI GDGCHC 1 cut(s) 166
SetI ASST 6 cut(s) 19, 246, 307, 480, 578, 589
SfaNI GCATC 2 cut(s) 40, 616
SmiMI CAYNNNNRTG 1 cut(s) 96
SnaBI TACGTA 1 cut(s) 244
Sse9I AATT 2 cut(s) 80, 493
SsiI CCGC 3 cut(s) 253, 392, 673
SspI AATATT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 715
TaaI ACNGT 7 cut(s) 326, 368, 389, 410, 452, 471, 487
TaiI ACGT 2 cut(s) 246, 480
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 80, 493
TatI WGTACW 2 cut(s) 347, 452
TfiI GAWTC 4 cut(s) 47, 88, 500, 666
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 3 cut(s) 394, 490, 568
TseFI GTSAC 3 cut(s) 473, 587, 719
TseI GCWGC 2 cut(s) 573, 635
Tsp45I GTSAC 3 cut(s) 473, 587, 719
TspDTI ATGAA 7 cut(s) 27, 60, 93, 201, 271, 369, 597
TspGWI ACGGA 2 cut(s) 203, 678
TspRI CASTG 3 cut(s) 394, 490, 568
Tth111I GACNNNGTC 1 cut(s) 263
VspI ATTAAT 1 cut(s) 492
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 18
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.