Rroxscaffold_2G00086950

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000217
Physical Location & Seq
Forward (+)
9082026 .. 9083601
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086950.1

Sequence Viewer

Length: 1527 bp
ATGTCGTTCCTATTACCACCCACTATTGCTCTGAAATCATCCTGGTTCAGCTTCTACATGAACTACAGCAATGATTCTGATTCCGAGACGCGTGGCTTTCTGAAATTCAACGGCACGAATATCTTCAGCTCGTTAGCAAAGTTCGAAGTGGTGACGGCCAATACTGGGACGGGAATACATATAAGATGCTCTCACAACAGAAAGTTCCTGCGAAAGAGATCTGAGGGTGATGTGAACCTTTCTCCGGAGGCTGATGAACCAGAAGAGGACCAATCCAAATGGTCGTGTACACTGTTTGAGCCTCAAGTAGCTGAAGATGGCAACCCCGACAAAGCACGGTTGTTCCATGTCCAATCAAAACAATATGCAACGGCATGGGACATAGAAGGAGTACGGTCCTTGAGATTATATGCAGAGCAGCATGGTCAGAATATCTTCGATATCACGGACTTGGAGTCATTGGTGATATTGCCAAAGCATGTGGCCTTCAAAGCCAGCAACGACTTTTACCTTCAGCTTGCGGAAAGTAATCAGCTCAGGTTCGTGTCCACCGATAAGGGGATTCCTGATTCGTGGTTCGAAGTGTCCACAGATGGCGATGGAAGGGTGAAAATCAAGTGCTACAAGAACAATACCTACCTGAGCGACGCCTCGAAACCTCCCACCTTGTTTTTGCCAGTCAAGGTCGACACTAGTATGGCCGCTCTCAAATGCGTGAGCAACGACAAATTTTGCGCCCTACACACCTTTGATATAAAAGACGGTCTGAACGCGCCTGAAACTAGTACCAGCATTTCAAACTTGTCACGCTTGAGGCTGGAAGAGCTTGTTCTCTCTAGGAGAATCTACAATACCGATTTCGACCTCACCAATGCCATAATCTACGGTCAGACCCCGGTCACCATGGCCACTGCAAACGCCAGCAACAACACCTCAGCAGAAAACACTGTGGAATTCAAGTTCGAGTACAAGGAGAGTAAGAGCAGCACGTGGAAGGCCAGCCACTCGTGGATGGTGAGCGCTAGTGTCTCCGCCAGCTTCAAAATTCCAATCATTGGTGGTACTGACGTCACCGTTTCTGGCGAATATACGGATTCATACGAGTGGGGAGAGACCATCACATCCGAAAACACATTGGAGACCACCTACAAGGCTATAGTGCCGGCAAACACTTCTATATCTGTGAGCCTGATGGCGACCAAGGGAACTTGCGACGTGCCCTACTCGTATTATCAGAAGGACGTGCTTCATAACGGTAAAACCGTTGTCTATAAGAAGGATGATGGGCTGTACACGGGAATAAATTCATACAATTTCCGCTACGAGACTACAGCACGGAAAGAGCCGATATCTATAGCTGATTTGCTGGACCCATCGGTCGACCCCACCACAGAGCAGATGTTGCCGGACCCATCGGTCGACCCCACCATAGAACAAATGATACCTGAGCCCGTGCCGTCTGGATCAACCACCAGAGTGCAATTAGAAGATGCAGCCTGCTCAGCTGCCATCAAAACCCTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

508

Amino Acids

56.51

Weight (kDa)

5.03

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 5 - 127 1.5e-14 Agglutinin domain
Aerolysin PF01117 287 - 410 1.3e-09 Aerolysin toxin
ETX_MTX2 PF03318 297 - 410 1e-06 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1376, 1415
AatII GACGTC 1 cut(s) 1071
AccB7I CCANNNNNTGG 1 cut(s) 1055
AccBSI CCGCTC 1 cut(s) 704
AccI GTMKAC 3 cut(s) 687, 1380, 1419
AccII CGCG 2 cut(s) 91, 773
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 4 cut(s) 521, 702, 1032, 1318
AclWI GGATC 1 cut(s) 1471
AcoI YGGCCR 3 cut(s) 156, 699, 906
AcsI RAATTY 5 cut(s) 104, 728, 953, 1044, 1303
AcuI CTGAAG 3 cut(s) 109, 333, 497
AcvI CACGTG 1 cut(s) 990
AcyI GRCGYC 2 cut(s) 648, 1068
AfaI GTAC 6 cut(s) 289, 393, 787, 968, 1063, 1292
AfeI AGCGCT 1 cut(s) 1021
AfiI CCNNNNNNNGG 4 cut(s) 165, 244, 558, 1055
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 5 cut(s) 109, 490, 798, 958, 1042
AhdI GACNNNNNGTC 1 cut(s) 454
AhlI ACTAGT 2 cut(s) 692, 782
AjiI CACGTC 2 cut(s) 1216, 1243
AjnI CCWGG 1 cut(s) 41
AleI CACNNNNGTG 1 cut(s) 1475
AloI GAACNNNNNNTCC 2 cut(s) 944, 976
Alw26I GTCTC 5 cut(s) 80, 1033, 1106, 1133, 1319
AlwI GGATC 1 cut(s) 1471
Aor13HI TCCGGA 1 cut(s) 244
Aor51HI AGCGCT 1 cut(s) 1021
AoxI GGCC 5 cut(s) 156, 483, 699, 906, 996
ApeKI GCWGC 4 cut(s) 418, 984, 1493, 1505
ApoI RAATTY 5 cut(s) 104, 728, 953, 1044, 1303
Asp700I GAANNNNTTC 3 cut(s) 122, 434, 1303
AspLEI GCGC 3 cut(s) 737, 775, 1022
AspS9I GGNCC 4 cut(s) 268, 396, 1369, 1408
AsuC2I CCSGG 1 cut(s) 896
AsuHPI GGTGA 8 cut(s) 163, 239, 475, 619, 859, 892, 1027, 1063
AsuII TTCGAA 2 cut(s) 144, 579
AvaII GGWCC 4 cut(s) 268, 396, 1369, 1408
BaeGI GKGCMC 1 cut(s) 1221
BaeI ACNNNNGTAYC 2 cut(s) 1053, 1086
BalI TGGCCA 1 cut(s) 908
BanII GRGCYC 1 cut(s) 1452
BauI CACGAG 1 cut(s) 1006
BbrPI CACGTG 1 cut(s) 990
BbvCI CCTCAGC 1 cut(s) 934
BbvI GCAGC 4 cut(s) 430, 996, 1492, 1505
BceAI ACGGC 4 cut(s) 127, 171, 387, 1441
BciT130I CCWGG 1 cut(s) 43
BcnI CCSGG 1 cut(s) 896
BcoDI GTCTC 5 cut(s) 80, 1033, 1106, 1133, 1319
BcuI ACTAGT 2 cut(s) 692, 782
BfaI CTAG 5 cut(s) 693, 783, 837, 1023, 1520
BfmI CTRYAG 4 cut(s) 64, 1155, 1329, 1353
BfoI RGCGCY 1 cut(s) 1023
BglII AGATCT 1 cut(s) 218
BisI GCNGC 5 cut(s) 419, 702, 985, 1494, 1506
BlpI GCTNAGC 1 cut(s) 1501
BlsI GCNGC 5 cut(s) 420, 703, 986, 1495, 1507
Bme1390I CCNGG 2 cut(s) 43, 896
Bme18I GGWCC 4 cut(s) 268, 396, 1369, 1408
BmeRI GACNNNNNGTC 1 cut(s) 454
BmgBI CACGTC 2 cut(s) 1216, 1243
BmgT120I GGNCC 4 cut(s) 268, 396, 1369, 1408
BmiI GGNNCC 2 cut(s) 1371, 1410
BmrFI CCNGG 2 cut(s) 43, 896
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 176, 1480
BmuI ACTGGG 1 cut(s) 174
BoxI GACNNNNGTC 1 cut(s) 896
Bpu10I CCTNAGC 4 cut(s) 536, 641, 934, 1446
Bpu1102I GCTNAGC 1 cut(s) 1501
Bpu14I TTCGAA 2 cut(s) 144, 579
BpuEI CTTGAG 3 cut(s) 288, 421, 832
BpuMI CCSGG 1 cut(s) 896
BsaAI YACGTR 1 cut(s) 990
BsaHI GRCGYC 2 cut(s) 648, 1068
BsaI GGTCTC 2 cut(s) 1106, 1133
BsaJI CCNNGG 3 cut(s) 894, 903, 1200
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 244, 558, 1055
Bse118I RCCGGY 1 cut(s) 1162
Bse1I ACTGG 2 cut(s) 169, 677
Bse3DI GCAATG 1 cut(s) 76
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 894, 903, 1200
BseGI GGATG 4 cut(s) 38, 1017, 1121, 1285
BseLI CCNNNNNNNGG 4 cut(s) 165, 244, 558, 1055
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 6 cut(s) 213, 550, 632, 948, 1437, 1515
BseNI ACTGG 2 cut(s) 169, 677
BseSI GKGCMC 1 cut(s) 1221
BseXI GCAGC 4 cut(s) 430, 996, 1492, 1505
Bsh1236I CGCG 2 cut(s) 91, 773
Bsh1285I CGRYCG 2 cut(s) 1380, 1419
BshFI GGCC 5 cut(s) 158, 485, 701, 908, 998
BsiEI CGRYCG 2 cut(s) 1380, 1419
BsiSI CCGG 4 cut(s) 245, 896, 1163, 1406
BslFI GGGAC 2 cut(s) 181, 392
BslI CCNNNNNNNGG 4 cut(s) 165, 244, 558, 1055
BsmAI GTCTC 5 cut(s) 80, 1033, 1106, 1133, 1319
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 2 cut(s) 181, 392
BsnI GGCC 5 cut(s) 158, 485, 701, 908, 998
Bso31I GGTCTC 2 cut(s) 1106, 1133
Bsp119I TTCGAA 2 cut(s) 144, 579
Bsp1286I GDGCHC 2 cut(s) 1221, 1452
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 2 cut(s) 287, 1290
Bsp143I GATC 2 cut(s) 218, 1463
Bsp1720I GCTNAGC 1 cut(s) 1501
Bsp19I CCATGG 1 cut(s) 903
BspACI CCGC 4 cut(s) 521, 702, 1032, 1318
BspANI GGCC 5 cut(s) 158, 485, 701, 908, 998
BspCNI CTCAG 6 cut(s) 214, 549, 633, 947, 1438, 1514
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 2 cut(s) 91, 773
BspLI GGNNCC 2 cut(s) 1371, 1410
BspPI GGATC 1 cut(s) 1471
BspQI GCTCTTC 1 cut(s) 816
BspT104I TTCGAA 2 cut(s) 144, 579
BspTNI GGTCTC 2 cut(s) 1106, 1133
BsrBI CCGCTC 1 cut(s) 704
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 1162
BsrGI TGTACA 2 cut(s) 287, 1290
BsrI ACTGG 2 cut(s) 169, 677
BssAI RCCGGY 1 cut(s) 1162
BssECI CCNNGG 3 cut(s) 894, 903, 1200
BssMI GATC 2 cut(s) 218, 1463
BssNI GRCGYC 2 cut(s) 648, 1068
BssSI CACGAG 1 cut(s) 1006
BssT1I CCWWGG 2 cut(s) 903, 1200
Bst2BI CACGAG 1 cut(s) 1006
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 9 cut(s) 294, 339, 396, 764, 887, 949, 1075, 1256, 1264
Bst6I CTCTTC 2 cut(s) 258, 816
BstACI GRCGYC 2 cut(s) 648, 1068
BstAPI GCANNNNNTGC 1 cut(s) 1402
BstAUI TGTACA 2 cut(s) 287, 1290
BstBAI YACGTR 1 cut(s) 990
BstBI TTCGAA 2 cut(s) 144, 579
BstC8I GCNNGC 7 cut(s) 496, 519, 922, 1000, 1036, 1164, 1498
BstDEI CTNAG 6 cut(s) 222, 536, 641, 934, 1446, 1501
BstDSI CCRYGG 1 cut(s) 903
BstEII GGTNACC 1 cut(s) 898
BstF5I GGATG 4 cut(s) 38, 1017, 1121, 1285
BstFNI CGCG 2 cut(s) 91, 773
BstH2I RGCGCY 1 cut(s) 1023
BstHHI GCGC 3 cut(s) 737, 775, 1022
BstKTI GATC 2 cut(s) 221, 1466
BstMAI GTCTC 5 cut(s) 80, 1033, 1106, 1133, 1319
BstMBI GATC 2 cut(s) 218, 1463
BstMCI CGRYCG 2 cut(s) 1380, 1419
BstMWI GCNNNNNNNGC 4 cut(s) 491, 823, 1402, 1502
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 482
BstPAI GACNNNNGTC 1 cut(s) 896
BstPI GGTNACC 1 cut(s) 898
BstSCI CCNGG 2 cut(s) 41, 894
BstSFI CTRYAG 4 cut(s) 64, 1155, 1329, 1353
BstSLI GKGCMC 1 cut(s) 1221
BstUI CGCG 2 cut(s) 91, 773
BstV1I GCAGC 4 cut(s) 430, 996, 1492, 1505
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 5 cut(s) 158, 485, 701, 908, 998
BtgI CCRYGG 1 cut(s) 903
BtgZI GCGATG 1 cut(s) 612
BtrI CACGTC 2 cut(s) 1216, 1243
BtsCI GGATG 4 cut(s) 38, 1017, 1121, 1285
BtsI GCAGTG 1 cut(s) 909
BtsIMutI CAGTG 3 cut(s) 290, 909, 945
Cac8I GCNNGC 7 cut(s) 496, 519, 922, 1000, 1036, 1164, 1498
CfoI GCGC 3 cut(s) 737, 775, 1022
Cfr10I RCCGGY 1 cut(s) 1162
Cfr13I GGNCC 4 cut(s) 268, 396, 1369, 1408
CseI GACGC 2 cut(s) 97, 656
Csp6I GTAC 6 cut(s) 288, 392, 786, 967, 1062, 1291
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 6 cut(s) 58, 347, 375, 422, 479, 904
CviQI GTAC 6 cut(s) 288, 392, 786, 967, 1062, 1291
DdeI CTNAG 6 cut(s) 222, 536, 641, 934, 1446, 1501
DpnI GATC 2 cut(s) 220, 1465
DpnII GATC 2 cut(s) 218, 1463
DrdI GACNNNNNNGTC 2 cut(s) 1376, 1415
DriI GACNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 2 cut(s) 1376, 1415
EaeI YGGCCR 3 cut(s) 156, 699, 906
Eam1104I CTCTTC 2 cut(s) 258, 816
Eam1105I GACNNNNNGTC 1 cut(s) 454
EarI CTCTTC 2 cut(s) 258, 816
EciI GGCGGA 1 cut(s) 1021
Eco130I CCWWGG 2 cut(s) 903, 1200
Eco24I GRGCYC 1 cut(s) 1452
Eco31I GGTCTC 2 cut(s) 1106, 1133
Eco32I GATATC 2 cut(s) 442, 1350
Eco47I GGWCC 4 cut(s) 268, 396, 1369, 1408
Eco47III AGCGCT 1 cut(s) 1021
Eco57I CTGAAG 3 cut(s) 109, 333, 497
Eco72I CACGTG 1 cut(s) 990
Eco91I GGTNACC 1 cut(s) 898
EcoO65I GGTNACC 1 cut(s) 898
EcoRI GAATTC 1 cut(s) 953
EcoRII CCWGG 1 cut(s) 41
EcoRV GATATC 2 cut(s) 442, 1350
EcoT14I CCWWGG 2 cut(s) 903, 1200
EcoT38I GRGCYC 1 cut(s) 1452
ErhI CCWWGG 2 cut(s) 903, 1200
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 6 cut(s) 61, 350, 378, 425, 482, 907
FaqI GGGAC 2 cut(s) 181, 392
FatI CATG 6 cut(s) 57, 346, 374, 421, 478, 903
FblI GTMKAC 3 cut(s) 687, 1380, 1419
Fnu4HI GCNGC 5 cut(s) 419, 702, 985, 1494, 1506
FokI GGATG 4 cut(s) 25, 1024, 1108, 1292
FriOI GRGCYC 1 cut(s) 1452
Fsp4HI GCNGC 5 cut(s) 419, 702, 985, 1494, 1506
FspBI CTAG 5 cut(s) 693, 783, 837, 1023, 1520
GlaI GCGC 3 cut(s) 736, 774, 1021
GluI GCNGC 5 cut(s) 419, 702, 985, 1494, 1506
HaeII RGCGCY 1 cut(s) 1023
HaeIII GGCC 5 cut(s) 158, 485, 701, 908, 998
HapII CCGG 4 cut(s) 245, 896, 1163, 1406
HgaI GACGC 2 cut(s) 97, 656
HhaI GCGC 3 cut(s) 737, 775, 1022
Hin1I GRCGYC 2 cut(s) 648, 1068
Hin1II CATG 6 cut(s) 61, 350, 378, 425, 482, 907
Hin6I GCGC 3 cut(s) 735, 773, 1020
HinP1I GCGC 3 cut(s) 735, 773, 1020
HincII GTYRAC 3 cut(s) 688, 1381, 1420
HindII GTYRAC 3 cut(s) 688, 1381, 1420
HinfI GANTC 7 cut(s) 74, 80, 455, 562, 569, 843, 1094
HpaII CCGG 4 cut(s) 245, 896, 1163, 1406
HphI GGTGA 8 cut(s) 163, 239, 475, 619, 859, 892, 1027, 1063
Hpy166II GTNNAC 9 cut(s) 235, 288, 290, 549, 588, 688, 1293, 1381, 1420
Hpy188III TCNNGA 3 cut(s) 245, 566, 1461
Hpy8I GTNNAC 9 cut(s) 235, 288, 290, 549, 588, 688, 1293, 1381, 1420
Hpy99I CGWCG 2 cut(s) 650, 1217
HpyAV CCTTC 7 cut(s) 380, 496, 521, 597, 988, 1231, 1270
HpyCH4III ACNGT 9 cut(s) 294, 339, 396, 764, 887, 949, 1075, 1256, 1264
HpyCH4IV ACGT 4 cut(s) 989, 1068, 1215, 1242
HpyCH4V TGCA 5 cut(s) 368, 413, 914, 1480, 1493
HpyF10VI GCNNNNNNNGC 4 cut(s) 491, 823, 1402, 1502
HpyF3I CTNAG 6 cut(s) 222, 536, 641, 934, 1446, 1501
HpySE526I ACGT 4 cut(s) 989, 1068, 1215, 1242
Hsp92I GRCGYC 2 cut(s) 648, 1068
Hsp92II CATG 6 cut(s) 61, 350, 378, 425, 482, 907
HspAI GCGC 3 cut(s) 735, 773, 1020
Kpn2I TCCGGA 1 cut(s) 244
KroI GCCGGC 1 cut(s) 1162
KroNI GCCGGC 1 cut(s) 1164
Kzo9I GATC 2 cut(s) 218, 1463
LguI GCTCTTC 1 cut(s) 816
Lsp1109I GCAGC 4 cut(s) 430, 996, 1492, 1505
LweI GCATC 2 cut(s) 176, 1480
MaeI CTAG 5 cut(s) 693, 783, 837, 1023, 1520
MaeII ACGT 4 cut(s) 989, 1068, 1215, 1242
MaeIII GTNAC 4 cut(s) 151, 804, 898, 1069
MalI GATC 2 cut(s) 220, 1465
MbiI CCGCTC 1 cut(s) 704
MboI GATC 2 cut(s) 218, 1463
MboII GAAGA 6 cut(s) 115, 275, 326, 427, 833, 1499
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 1221, 1452
MlsI TGGCCA 1 cut(s) 908
MluCI AATT 7 cut(s) 104, 728, 953, 1044, 1303, 1312, 1481
MluI ACGCGT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 908
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 9 cut(s) 217, 241, 259, 312, 661, 669, 807, 875, 943
Mox20I TGGCCA 1 cut(s) 908
MroI TCCGGA 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 1162
MroXI GAANNNNTTC 3 cut(s) 122, 434, 1303
MscI TGGCCA 1 cut(s) 908
MslI CAYNNNNRTG 3 cut(s) 695, 1102, 1475
Msp20I TGGCCA 1 cut(s) 908
MspA1I CMGCKG 1 cut(s) 1505
MspI CCGG 4 cut(s) 245, 896, 1163, 1406
MspR9I CCNGG 2 cut(s) 43, 896
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 2 cut(s) 91, 773
MwoI GCNNNNNNNGC 4 cut(s) 491, 823, 1402, 1502
NaeI GCCGGC 1 cut(s) 1164
NciI CCSGG 1 cut(s) 896
NcoI CCATGG 1 cut(s) 903
NdeII GATC 2 cut(s) 218, 1463
NgoMIV GCCGGC 1 cut(s) 1162
NlaIII CATG 6 cut(s) 61, 350, 378, 425, 482, 907
NlaIV GGNNCC 2 cut(s) 1371, 1410
NmuCI GTSAC 4 cut(s) 151, 804, 898, 1069
NspI RCATGY 1 cut(s) 482
NspV TTCGAA 2 cut(s) 144, 579
OliI CACNNNNGTG 1 cut(s) 1475
PciSI GCTCTTC 1 cut(s) 816
PcsI WCGNNNNNNNCGW 2 cut(s) 549, 1260
PdiI GCCGGC 1 cut(s) 1164
PdmI GAANNNNTTC 3 cut(s) 122, 434, 1303
PfeI GAWTC 6 cut(s) 74, 80, 562, 569, 843, 1094
PflMI CCANNNNNTGG 1 cut(s) 1055
PkrI GCNGC 5 cut(s) 420, 703, 986, 1495, 1507
PleI GAGTC 1 cut(s) 463
PmaCI CACGTG 1 cut(s) 990
PmlI CACGTG 1 cut(s) 990
PpsI GAGTC 1 cut(s) 463
Ppu21I YACGTR 1 cut(s) 990
PshAI GACNNNNGTC 1 cut(s) 896
Psp6I CCWGG 1 cut(s) 41
PspCI CACGTG 1 cut(s) 990
PspEI GGTNACC 1 cut(s) 898
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 1371, 1410
PspPI GGNCC 4 cut(s) 268, 396, 1369, 1408
PsrI GAACNNNNNNTAC 4 cut(s) 620, 652, 1425, 1457
PsuI RGATCY 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 1505
RsaI GTAC 6 cut(s) 289, 393, 787, 968, 1063, 1292
RsaNI GTAC 6 cut(s) 288, 392, 786, 967, 1062, 1291
RseI CAYNNNNRTG 3 cut(s) 695, 1102, 1475
SalI GTCGAC 3 cut(s) 686, 1379, 1418
SapI GCTCTTC 1 cut(s) 816
SatI GCNGC 5 cut(s) 419, 702, 985, 1494, 1506
Sau3AI GATC 2 cut(s) 218, 1463
Sau96I GGNCC 4 cut(s) 268, 396, 1369, 1408
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 43, 896
SduI GDGCHC 2 cut(s) 1221, 1452
SfaNI GCATC 2 cut(s) 176, 1480
SfcI CTRYAG 4 cut(s) 64, 1155, 1329, 1353
SfuI TTCGAA 2 cut(s) 144, 579
SinI GGWCC 4 cut(s) 268, 396, 1369, 1408
SmiMI CAYNNNNRTG 3 cut(s) 695, 1102, 1475
SmlI CTYRAG 3 cut(s) 303, 400, 811
SmoI CTYRAG 3 cut(s) 303, 400, 811
SpeI ACTAGT 2 cut(s) 692, 782
Sse9I AATT 7 cut(s) 104, 728, 953, 1044, 1303, 1312, 1481
SsiI CCGC 4 cut(s) 521, 702, 1032, 1318
SspMI CTAG 5 cut(s) 693, 783, 837, 1023, 1520
StyD4I CCNGG 2 cut(s) 41, 894
StyI CCWWGG 2 cut(s) 903, 1200
TaaI ACNGT 9 cut(s) 294, 339, 396, 764, 887, 949, 1075, 1256, 1264
TaiI ACGT 4 cut(s) 992, 1071, 1218, 1245
TaqI TCGA 9 cut(s) 144, 438, 579, 653, 687, 861, 963, 1380, 1419
TaqII GACCGA 2 cut(s) 1366, 1405
TasI AATT 7 cut(s) 104, 728, 953, 1044, 1303, 1312, 1481
TatI WGTACW 3 cut(s) 287, 966, 1290
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 6 cut(s) 74, 80, 562, 569, 843, 1094
TscAI CASTG 3 cut(s) 297, 916, 952
TseFI GTSAC 4 cut(s) 151, 804, 898, 1069
TseI GCWGC 4 cut(s) 418, 984, 1493, 1505
Tsp45I GTSAC 4 cut(s) 151, 804, 898, 1069
TspDTI ATGAA 5 cut(s) 74, 270, 1086, 1238, 1296
TspGWI ACGGA 3 cut(s) 461, 1106, 1351
TspRI CASTG 3 cut(s) 297, 916, 952
Van91I CCANNNNNTGG 1 cut(s) 1055
VpaK11BI GGWCC 4 cut(s) 268, 396, 1369, 1408
XapI RAATTY 5 cut(s) 104, 728, 953, 1044, 1303
XceI RCATGY 1 cut(s) 482
XmiI GTMKAC 3 cut(s) 687, 1380, 1419
XmnI GAANNNNTTC 3 cut(s) 122, 434, 1303
XspI CTAG 5 cut(s) 693, 783, 837, 1023, 1520
ZraI GACGTC 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.