pycom14g20090

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000217
Physical Location & Seq
Reverse (-)
21213136 .. 21213855
720 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g20090.1

Sequence Viewer

Length: 720 bp
ATGGAGCCGGCAGACAGCGGTTACGGAGGACTCGTGCATATCAAATGCTGTTTCAACAACAATTACTTGAGAAGGGCGATCGATCACCAGTACTGGATTGTAGCTGGAGCTGACGAACCAAAGGAAGATAAAAGACATTGGTCCTGCACATTGTTCCAGCCTGTGGTTGTCCATTCAAACAACAAGGCAGTCTTCCGATTACTCCACGTGCAACTCGGGCACTTTGTGAGGTCATTCACTATTAACGACTTCAACCAGTGCCTCTTCGCAAAGAGAAACACCCCCAACCTCCACAACGACATGGATGTGTACACGGTCATCAACTTGGAACCGCTTGTACTACCAAGGTCTTTTGCGCTGATATCAAACAACAACAAAAAATACTTGCACTACATACATCAACGTATCGAGAATCTTGATGAGCTTGTCCAACTCTCCGAAGAGTATGTCAAAAGCGAGTACGCAAAGTTCCAAATGGAGCCAGCAGACAGCGGTTACGGAGGACTCGTGCATATCAAATGCTGGTTCAACAACAAGTACTTGAGAAGAGCAAACAATCACCAGTACTGGATTGTAGCTGGAGCTAACGAACCAGAGGAAGATAAAAAAACATTGGTCCTGCACATTGTTCAAGCATGTGGTTGTCCATTCAGACAACAAGGCAGTCTTCTGATTACCCCACGTGCAACTCGGGCACTTTGTGACGTCATTCACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

240

Amino Acids

27.72

Weight (kDa)

8.06

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 7 - 107 3.8e-23 Agglutinin domain
Agglutinin PF07468 114 - 203 6.2e-20 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 708
AccB7I CCANNNNNTGG 1 cut(s) 163
AciI CCGC 3 cut(s) 18, 332, 492
AcvI CACGTG 2 cut(s) 208, 683
AcyI GRCGYC 1 cut(s) 705
AdeI CACNNNGTG 2 cut(s) 226, 701
AfaI GTAC 6 cut(s) 92, 311, 339, 461, 539, 566
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 5 cut(s) 55, 177, 253, 529, 632
AluBI AGCT 5 cut(s) 104, 110, 424, 578, 584
AluI AGCT 5 cut(s) 104, 110, 424, 578, 584
Ama87I CYCGRG 2 cut(s) 215, 690
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 141, 616
AsuHPI GGTGA 2 cut(s) 77, 551
AvaI CYCGRG 2 cut(s) 215, 690
AvaII GGWCC 2 cut(s) 141, 616
BaeGI GKGCMC 2 cut(s) 222, 697
BauI CACGAG 2 cut(s) 32, 506
BbrPI CACGTG 2 cut(s) 208, 683
BbsI GAAGAC 2 cut(s) 184, 659
BmcAI AGTACT 3 cut(s) 92, 539, 566
Bme18I GGWCC 2 cut(s) 141, 616
BmeT110I CYCGRG 2 cut(s) 215, 690
BmgT120I GGNCC 2 cut(s) 141, 616
BmiI GGNNCC 3 cut(s) 6, 330, 480
BoxI GACNNNNGTC 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 184, 659
BpmI CTGGAG 2 cut(s) 126, 600
BpuEI CTTGAG 2 cut(s) 88, 562
Bsa29I ATCGAT 1 cut(s) 81
BsaAI YACGTR 2 cut(s) 208, 683
BsaHI GRCGYC 1 cut(s) 705
BsaJI CCNNGG 1 cut(s) 344
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 492, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 5 cut(s) 88, 98, 256, 562, 572
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 163
BseNI ACTGG 5 cut(s) 88, 98, 256, 562, 572
BseSI GKGCMC 2 cut(s) 222, 697
BsgI GTGCAG 2 cut(s) 130, 605
Bsh1285I CGRYCG 1 cut(s) 81
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 81
BsiHKCI CYCGRG 2 cut(s) 215, 690
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 215, 690
Bsp1286I GDGCHC 2 cut(s) 222, 697
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 2 cut(s) 78, 82
BspACI CCGC 3 cut(s) 18, 332, 492
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 3 cut(s) 6, 330, 480
BspQI GCTCTTC 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 309
BsrI ACTGG 5 cut(s) 88, 98, 256, 562, 572
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 2 cut(s) 78, 82
BssNI GRCGYC 1 cut(s) 705
BssSI CACGAG 2 cut(s) 32, 506
BssT1I CCWWGG 1 cut(s) 344
Bst2BI CACGAG 2 cut(s) 32, 506
Bst4CI ACNGT 2 cut(s) 316, 716
Bst6I CTCTTC 3 cut(s) 269, 435, 541
BstACI GRCGYC 1 cut(s) 705
BstAUI TGTACA 1 cut(s) 309
BstBAI YACGTR 2 cut(s) 208, 683
BstC8I GCNNGC 2 cut(s) 9, 483
BstF5I GGATG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 2 cut(s) 81, 85
BstMBI GATC 2 cut(s) 78, 82
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 217, 692
BstNSI RCATGY 1 cut(s) 639
BstPAI GACNNNNGTC 1 cut(s) 139
BstSLI GKGCMC 2 cut(s) 222, 697
BstV2I GAAGAC 2 cut(s) 184, 659
Bsu15I ATCGAT 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 263, 712
Cac8I GCNNGC 2 cut(s) 9, 483
CfoI GCGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 141, 616
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 6 cut(s) 91, 310, 338, 460, 538, 565
CviAII CATG 2 cut(s) 301, 636
CviJI RGCY 8 cut(s) 7, 104, 110, 160, 424, 481, 578, 584
CviKI_1 RGCY 8 cut(s) 7, 104, 110, 160, 424, 481, 578, 584
CviQI GTAC 6 cut(s) 91, 310, 338, 460, 538, 565
DpnI GATC 2 cut(s) 80, 84
DpnII GATC 2 cut(s) 78, 82
DraIII CACNNNGTG 2 cut(s) 226, 701
Eam1104I CTCTTC 3 cut(s) 269, 435, 541
EarI CTCTTC 3 cut(s) 269, 435, 541
Eco130I CCWWGG 1 cut(s) 344
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 141, 616
Eco72I CACGTG 2 cut(s) 208, 683
Eco88I CYCGRG 2 cut(s) 215, 690
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 2 cut(s) 304, 639
FaiI YATR 6 cut(s) 39, 302, 395, 447, 513, 637
FalI AAGNNNNNCTT 4 cut(s) 176, 208, 651, 683
FatI CATG 2 cut(s) 300, 635
FokI GGATG 1 cut(s) 317
GlaI GCGC 1 cut(s) 357
GsuI CTGGAG 2 cut(s) 126, 600
HapII CCGG 1 cut(s) 8
HhaI GCGC 1 cut(s) 358
Hin1I GRCGYC 1 cut(s) 705
Hin1II CATG 2 cut(s) 304, 639
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 3 cut(s) 30, 412, 504
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 77, 551
Hpy166II GTNNAC 2 cut(s) 310, 312
Hpy188I TCNGA 4 cut(s) 197, 439, 653, 672
Hpy188III TCNNGA 2 cut(s) 409, 416
Hpy8I GTNNAC 2 cut(s) 310, 312
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 316, 716
HpyCH4IV ACGT 4 cut(s) 207, 403, 682, 705
HpyCH4V TGCA 7 cut(s) 37, 147, 211, 388, 511, 622, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 692
HpySE526I ACGT 4 cut(s) 207, 403, 682, 705
Hsp92I GRCGYC 1 cut(s) 705
Hsp92II CATG 2 cut(s) 304, 639
HspAI GCGC 1 cut(s) 356
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 78, 82
LguI GCTCTTC 1 cut(s) 541
LmnI GCTCC 4 cut(s) 4, 107, 478, 581
MaeII ACGT 4 cut(s) 207, 403, 682, 705
MaeIII GTNAC 3 cut(s) 20, 494, 701
MalI GATC 2 cut(s) 80, 84
MboI GATC 2 cut(s) 78, 82
MboII GAAGA 7 cut(s) 137, 184, 256, 452, 558, 611, 659
MhlI GDGCHC 2 cut(s) 222, 697
MluCI AATT 1 cut(s) 61
MlyI GAGTC 2 cut(s) 24, 498
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 6 cut(s) 20, 222, 272, 299, 494, 589
MroNI GCCGGC 1 cut(s) 7
MseI TTAA 2 cut(s) 243, 718
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 18, 492
MspI CCGG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 217, 692
NaeI GCCGGC 1 cut(s) 9
NdeII GATC 2 cut(s) 78, 82
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 2 cut(s) 304, 639
NlaIV GGNNCC 3 cut(s) 6, 330, 480
NmuCI GTSAC 1 cut(s) 701
NspI RCATGY 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 541
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 504
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 412
PflMI CCANNNNNTGG 1 cut(s) 163
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 2 cut(s) 24, 498
PmaCI CACGTG 2 cut(s) 208, 683
PmlI CACGTG 2 cut(s) 208, 683
PpsI GAGTC 2 cut(s) 24, 498
Ppu21I YACGTR 2 cut(s) 208, 683
PshAI GACNNNNGTC 1 cut(s) 139
PspCI CACGTG 2 cut(s) 208, 683
PspN4I GGNNCC 3 cut(s) 6, 330, 480
PspPI GGNCC 2 cut(s) 141, 616
PsrI GAACNNNNNNTAC 4 cut(s) 321, 353, 452, 484
PvuI CGATCG 1 cut(s) 81
RsaI GTAC 6 cut(s) 92, 311, 339, 461, 539, 566
RsaNI GTAC 6 cut(s) 91, 310, 338, 460, 538, 565
RseI CAYNNNNRTG 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 541
SaqAI TTAA 2 cut(s) 243, 718
Sau3AI GATC 2 cut(s) 78, 82
Sau96I GGNCC 2 cut(s) 141, 616
ScaI AGTACT 3 cut(s) 92, 539, 566
SchI GAGTC 2 cut(s) 24, 498
SduI GDGCHC 2 cut(s) 222, 697
SinI GGWCC 2 cut(s) 141, 616
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 67, 541
SmoI CTYRAG 2 cut(s) 67, 541
Sse9I AATT 1 cut(s) 61
SsiI CCGC 3 cut(s) 18, 332, 492
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 316, 716
TaiI ACGT 4 cut(s) 210, 406, 685, 708
TaqI TCGA 2 cut(s) 81, 408
TasI AATT 1 cut(s) 61
TatI WGTACW 5 cut(s) 90, 309, 337, 537, 564
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 2 cut(s) 243, 718
Tru9I TTAA 2 cut(s) 243, 718
TscAI CASTG 2 cut(s) 263, 719
TseFI GTSAC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 701
TspGWI ACGGA 2 cut(s) 39, 513
TspRI CASTG 2 cut(s) 263, 719
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 141, 616
XceI RCATGY 1 cut(s) 639
ZraI GACGTC 1 cut(s) 706
ZrmI AGTACT 3 cut(s) 92, 539, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.